Array 1 53828-61177 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKWA01000013.1 Acinetobacter junii strain TUM15498 sequence013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 53828 30 93.3 30 ............................TG TTCAAAAGAATGTGCATATAATCTTAGGGG 53888 30 96.7 30 .............................G CCACACCAAACGCAATAAAATTTAAAGGCA 53948 30 100.0 30 .............................. GCTCCTGTAACCTTTAATGCTGAGCCATAC 54008 30 96.7 30 .............................T TGGATATGCACTTAAAAATATCGCTACAGC 54068 30 96.7 30 .............................T ACCCACAGATAACCATGTATCATGTGAGCC 54128 30 100.0 30 .............................. TGTGCCAGCAGGCGGCGGAACAAGCGCTTT 54188 30 96.7 30 ............................G. TCAGGGTATCGTAAACCCATTCTTGTCTTT 54248 30 93.3 30 ............................CG AAGAAATCGCAGCAGGGCACCGTATTGATA 54308 30 93.3 30 ............................TT TGGAATGCGAAAGATTGCAAACATTACCTG 54368 30 93.3 30 ............................GT AGTGAAAGTAATTGCGGAACAAGTTAAATG 54428 30 96.7 30 .............................C GCCCATAAGCACGATGTAAATGATAGTGCA 54488 30 93.3 30 ............................TG AATCTGTTTTAATTCTTGAGGGTCTGGAGA 54548 30 96.7 30 ............................G. TGCGCAAAGCTTGCATAACGGCAGCATGAG 54608 30 93.3 30 ............................TG CTCCACCTTTAGACCCTAGATACTCTAATC 54668 30 96.7 30 ............................G. TATGAATACATAGATGAACATTGGAGAAAG 54728 30 96.7 30 .............................C AAGAAGACAAACGAACAAATGACCGTTCTT 54788 30 96.7 30 .............................G CTAAGCCACCCCTAAAAGCTTTTGCTCTGT 54848 30 100.0 30 .............................. TCTTTCCTGCGACCACCGCTTTAACTTCCT 54908 30 96.7 30 .............................T TATGAAAGAGCGCAAGCACATCATGGATGA 54968 30 100.0 30 .............................. TCCCCACCGTACTTGCGAGCACGAGCAACC 55028 30 93.3 30 ............................TG CACTCTCCTGAGCACTGATCGCCGCAATCC 55088 30 96.7 30 ............................G. ACAGCGGTGATATAGGCGGCATCCTGCAGG 55148 30 96.7 30 .............................T CGGAAGAATCTCGCCCTAGTAAATTGTCCG 55208 30 96.7 30 .............................T ATTCAGGAACAATGATGCACTCGTCAGTAA 55268 30 96.7 30 .............................C ATGGGATGCTCACGACATAGAAAAAGCTAA 55328 30 96.7 30 ............................G. CATTTGGCATTCGTTTGGCTGCTCACTTTG 55388 30 93.3 30 ............................TT GCAGGTGATCGTAACGTGAACAATATACCT 55448 30 100.0 30 .............................. AAGGCATAAAGTTTAGCGACATGCCATCCT 55508 30 96.7 30 .............................C CCCCGAAGAAATCGCAGCAGGTCATCGTAT 55568 30 96.7 30 ............................T. AGAATGCTTTGGTATTCTTTTAGGGATTTT 55628 30 96.7 30 .............................T ATATGGAATTTAGTTTATCAAAGAAGTCTT 55688 30 96.7 30 .............................T GCCGACATCAATCCAACGGCTATAATCATC 55748 30 93.3 30 ............................GT GAAAACTAACTATCCTTATCTTCCATGATT 55808 30 100.0 30 .............................. TCTTAGAGCACATATTTGGATTTAATACGA 55868 30 96.7 30 ............................T. GTTCAGAAGCTTTTTGAGCAGTTGTAGCAA 55928 30 96.7 30 ............................T. AGCAGGCAGAGCAGAGGGGGGCATGGAGTT 55988 30 93.3 30 ............................TG AAAACAACGACTGGAGACAAACGCCCGACG 56048 30 96.7 30 .............................G TATTTCAATGCAAAGCAACGCTTAGAAATG 56108 30 93.3 30 ............................TT GCCACAATTCATTAAAATCATGCTCTATGC 56168 30 96.7 30 .............................C GAGCAAGAACTTTCGATACTTGGGAAGCGT 56228 30 96.7 30 .............................G TGATCACAGCGTCAGTTGTAAATTTCATGT 56288 30 100.0 30 .............................. CTGATGACATTACAGACACTACAATTTCTT 56348 30 96.7 30 ............................G. GCAGATAGAGCACGATGAATAATAAAAAAG 56408 30 100.0 30 .............................. TCAACTGTTCAACGGCAATTGATAGAGCGT 56468 30 100.0 30 .............................. CAAAAAAAAGCTGGTTCACAAGTAGCTACA 56528 30 100.0 30 .............................. TGCAGAATCAGAAACAGACCAACAAAAAAA 56588 30 96.7 30 .............................T CTGATAAAGAAACGTCGCCAAATGCGGTAT 56648 30 100.0 30 .............................. CCCTTTCGAGCCAAAGCGCAACCTGTGCCG 56708 30 93.3 30 ............................GT GCTCTCTCCACCCCACCGCAACTGCATCAG 56768 30 96.7 30 ............................G. TGTAGGTACGCCACCTTTTGAGCCGATAGC 56828 30 96.7 30 ............................G. CCAGTGAAACCATTACACCTGCAGGAGAGC 56888 30 93.3 30 ............................TG CCAATCCCTGCAGGAATGCACCTGCGCCAA 56948 30 93.3 30 ............................GC TTCCTGTGATCTCTAATGCTATTGGGTCAA 57008 30 96.7 30 .............................T CCAGCCATTTTTGACAGTCTGCTTGTGAAA 57068 30 96.7 30 .............................G TGTAGAGGTCAAAAGAATTGATCATTTGTG 57128 30 96.7 30 .............................T GACTATACAATCACGCTTAAACAAAGACAC 57188 30 96.7 30 ............................G. TACATTGGGAACTAGACTTTTCCGCTTGGT 57248 30 100.0 30 .............................. TAGTTAGAGTCCTACCCTTTCCATTGATAC 57308 30 96.7 30 ............................T. GTTTATTAAAGACAGCAGCAACAACAATTA 57368 30 93.3 30 ............................TT GAGTACCTTCATATTGTGTTAAGTAACACA 57428 30 96.7 30 .............................G TTAAGTAAGCTTGCTTCTTCCATTTTTAAC 57488 30 96.7 30 .............................C ATCGCCCAAACCACGTGCAAAAGCATAGCG 57548 30 96.7 30 .............................C CAAGACCAGCAAAGGCGTTTAGCACTCTTA 57608 30 96.7 30 .............................T ACATGCAGCGCTAAAAATAGTTTGAGGATC 57668 30 93.3 30 ............................TT TTCGCGCAAAGCTTCTTCGAGCAGTTCAAT 57728 30 93.3 30 ............................TG CATCTGGTGCCGTGGTAACGCTTGCATCGA 57788 30 93.3 30 ............................TG AACAGGCCAAAGCGCAAATTATGCAACTTG 57848 30 96.7 30 ............................G. TTGAAGCACGTGATTTGCCTAAACTAAAGG 57908 30 96.7 30 ............................G. GAGAGTATCCAAGCAAGGAACAAGAAAAAG 57968 30 100.0 30 .............................. TTGTTGCAGCAGCAGTAACAGCAAGACCCA 58028 30 96.7 30 ............................G. TGGTTCGCCGAATCATTGGAACGGATGGTG 58088 30 93.3 30 ............................CT GCCATGAAGTCAGCGCTTGTAAGTGTTGTA 58148 30 96.7 30 .............................C ATATCCAATCGGATCACCACTTGGCTTGAC 58208 30 96.7 30 .............................C TTGACGAAATTTGAATACATTTGAGTTTCG 58268 30 96.7 30 .............................G TACATATATAACTAAGAGAAGATTGAAAGG 58328 30 96.7 30 .............................T GACTTAGTTCGACTCAAACGCCCATATTTT 58388 30 100.0 30 .............................. CACCTAAAACATTAATTTGCGTTTGGAGAC 58448 30 93.3 30 ............................CT ACTTTGAAAAGCGGACTAATATGATTCTCA 58508 30 96.7 30 .............................C GTGCTGAGTAGTTATATCGCAGAGCATCAA 58568 30 93.3 30 ............................TG CTGCATCACTTCCAGTCACAGGCTTACAAA 58628 30 96.7 30 .............................C CAGTAAGAGCGACCACGCCACCACGTTGAG 58688 30 100.0 30 .............................. ACAGTTCAATTAGGTCAAGCATTTGAAATG 58748 30 93.3 30 ............................TC ATTAAGTCAGCATTTAACTACTATCTAAAA 58808 30 96.7 30 .............................T AGTTTCTTTTTTAAATCGCTTGACCCACCC 58868 30 96.7 30 .............................C TGTGTTTTGTAAGCTTACGAAAGCGAACCT 58928 30 100.0 30 .............................. TGTCATATTTATATGTTTGCCACTCGCCCT 58988 30 93.3 30 ............................TT CTCAAGTAAATATGCAAGGTATTGAGCAAG 59048 30 100.0 30 .............................. TCGTACTTGCTGACTTTAATTTTCACGGTA 59108 30 93.3 30 ............................TG CTGGTGACCGTTCAACCTTGATCACAAGCA 59168 30 96.7 30 .............................G TGATTGAAGTTTTCAAAGACTCATTGCTGC 59228 30 100.0 30 .............................. GTTGCAATGCTGGCATTAAGTTACCTTGAT 59288 30 100.0 30 .............................. TTACCTGAAAACTTTACAATCCAAGTAAAT 59348 30 96.7 30 .............................G CAGGTCAAATCATCCTTTCAGCTTTTGGTA 59408 30 96.7 30 .............................G CAGCGCCACCTCTAAGAACTTTTGCTACTT 59468 30 100.0 30 .............................. GGAGGACTTTTTTTGCAAAGTTAGATAAAA 59528 30 96.7 30 .............................T AAGAAAACGTCAGCATGACCACGACCGTAA 59588 30 96.7 30 ............................C. CACCCGAAGCTCTAAACGGGATCATGTTCC 59648 30 96.7 30 ............................G. TCTCAAAGAATCAGGTCAGATCGAACAAGA 59708 30 96.7 30 ............................G. TTAGTACAGATAGCGCTATGTCAGCACCCG 59768 30 96.7 30 ............................C. AGAGCAAAAAACTGGAAAATTAATTTTTAT 59828 30 96.7 30 ............................T. TCATTACTTAGATAAACTGGTATATGACAA 59888 30 96.7 30 .............................T AGACAGTGACGCTTTTACCCGTAATTTCCT 59948 30 93.3 30 ............................TG ATTTTCACCACACATATTTTCTTTAAAGTT 60008 30 96.7 30 ............................T. TTGCAAACGCATTGGGTAAAGGTGTTGAAG 60068 30 93.3 30 ............................TT TTACAAACCAACGCTCGACTTCACCCTTTT 60128 30 96.7 30 .............................G CCAATGCTTTGTGGTTTAAAGCTGTGCCTG 60188 30 96.7 30 .............................T AATAATCATTATTCGCAGGGAGGACCCCAT 60248 30 93.3 30 ............................TT ATGGTGATGCTAAGATTGACATCAATGGTA 60308 30 96.7 30 .............................C AAACAGACACTGAATTAGAGTTCAACGATC 60368 30 93.3 30 ............................GC CAACGGTTGCACCTAAGCCATATGTTGAAA 60428 30 96.7 30 ............................T. GCGAAGTTGAAGCATAAGCAGAGTTAAAAG 60488 30 96.7 30 ............................T. CGTGACACGCCCCACGCTACGCACACCGAC 60548 30 93.3 30 ............................TT GCCAAGAATCCAAACGGCAAAGTTATTCCA 60608 30 96.7 30 ............................T. TCGCACTGGGGCTAAACCGAATGTATCTTG 60668 30 96.7 30 ............................C. CAACGCATCTTGCATTCAAGCCAACCACTC 60728 30 96.7 30 ............................C. TTAAAAAACCCTCCGAAGAGGGTTATCAAT 60788 30 96.7 30 ............................T. TTTAAAACCAATTGTTATCTCTATGGCTTC 60848 30 93.3 30 ............................TC ATGCAGCTTAGTGAGCAGGAAGAGGATAGA 60908 30 93.3 30 ............................TT ACAGCGCAGGGATGTGCTGCGGGTATAGTA 60968 30 93.3 30 ............................TG TACATACTGGATCGAGTGGAACAGCAAATC 61028 30 96.7 30 .............................G CAATTCATGGTATGGGTTTTATTAGCGAAT 61088 30 93.3 30 .............C...............T AAAGCAATATTGACCAATAAAAGTAAGCGT 61148 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ============================== ================== 123 30 96.3 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GTAAATGGCTAGAACGATTCATTGATTATGTTCATATCATTCAACCGAGAGAAGTACCTCAAGCTAAAGTTACTGGTCATGCACACTATTATCGAGTCAATCCAAAGATGAGTGTTGAAGAGCGTATAGTTCATCAAGCGCAACGTCGAAATATTTCTTTGGATGAGGCTACGCAGCATTTTAAACAATATATTGAAAAACCTATTATTGAGCCTTATGTGAGTTTAAAAAGTCTGAGTGCAAAACGAGATCAAAATATAGATCGACCATATCGTTTATATATTGGTAAATCTCTAGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGACTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTACTATTTAACAGCTTAATAAAATCAATAAGTTACACCAAGTCGTTTTTTGATTGGGTAAATTGCTAAAAAACCATCATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ACATGTGATTTATTCATATGAGCCATTTAGAAATGTAACGGTCTTGATTGGCATTTGTTCTGTGTGTTCATTACGGAATTTATTTTAAGAATTAATAAGTGACTTATAATTCTTGTTCCAAAATTATCGTGTTATATGTCATTTAAAATACATAACATCAAGAAATATGATTCTTACTACATTCTAGATCTTTAATTTTTAAATAAGAAAATATACCCTGAAACCAACGTTTTTTTAGTGAAATTTTCATGCGCGGTTTATACCTCATCACCAATGATGATCCCATTCAACTTCTTTTAGAAAAGTTAGAGGCTGCACTAGCTACTGGTCATATAGCTATTTTGCAATATCGTCGAAAAAAAATAGAAAAAATAAATCAACCATCTGAAGTGGAGTTGATCAAAGTCCTTTGTGAAAAATATCAAGTCCCTTTTGTCATTAATGATGATTTGGCGTTAGCAGAACAATTTGGTTTAGGTGTGCATCTAGGGCAGTCCGAT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //