Array 1 22536-22145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFU010000032.1 Bacteroides pyogenes strain DD46 JD60_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 22535 36 100.0 30 .................................... GTTTGCATTTTCTTCACGACTAATGCAGTT 22469 36 100.0 30 .................................... TAGCGGCTAACTTAGCCATGTCGATCGGCG 22403 36 100.0 30 .................................... GCAAGCACAACAGGAAAAGGTGCGAATAAA 22337 36 100.0 30 .................................... ATAGTGCTAATTCTCCTTTAGCATCAAAAT 22271 36 88.9 55 ...............A....A............TG. TATCGCTGACGAGTGGATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 22180 36 80.6 0 .....A.......T...C.......A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 6 36 94.9 35 GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Left flank : ACGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGGTTGATGCCTTATTTTGCCAACCATGAAGCAACACAAGAGCAAGTGGAGGTGGAATTGCGTCATTATGAAGATCATCGCAGACGTGTATTTGATTGGGTTTTTGCTTTGGAAAAATCCGTTTTGAAGAATGAAAAGCTGAGAAGGTTGTATGAAAAATCTCAGGAAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCAACACTCGTTTCGGAAGAAGAATATAAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCAGACTTGGAATTTGGGAAACTGACCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTT # Right flank : GTATATAGAACCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATACATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTTACCCTATTTTTTGTTTATAGAATGATAACCATATCCGCCTAAACACCTGACGAAGAAAAGAGAAACACCGCTATTAATAGTCGCTGCAAACTTTATTCAGGTCGACGGTGAAACCATCGTTCAACGGCATGAATTTGCCTTTTCGTTTCAGAAATTCTATCAATTCGTCGATATTCATGTTTTCGGCGGAGCAGGTGTAAAAATGCCGGGAAATGCTGAACCTCTTGATAATGGCTTCTTTCAGGCTGGCTTCCCGCCATAAACGGTAACAAATGTTACATTCATCGCCCGGATAATGAGATAATAGAAAGCGGTTTAGAAGATTTACGTAAATTTTGTT # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 30569-26987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFU010000010.1 Bacteroides pyogenes strain DD46 JD60_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 30568 47 100.0 30 ............................................... AGCCTATTGCAAGCGAAAGGCATACCCACG 30491 47 100.0 30 ............................................... CGAAAGATTGAGACCGTTTGCATCAACTTC 30414 47 100.0 29 ............................................... ATAACCTTGCCTTCATACTCAGTCCTCCG 30338 47 100.0 29 ............................................... ACAAAGAAAATAGTCTCTCCCATATATAC 30262 47 100.0 29 ............................................... TGGTATCTGAAAGAGCATCCTCCAGCGAC 30186 47 100.0 30 ............................................... CTGCTCTACCATCGGCATTACTCTGTCCAG 30109 47 100.0 30 ............................................... ATTCATTCGTTCGCCAACCCTGTAGCTCTC 30032 47 100.0 30 ............................................... TGGAGCAGATGATTATATCAGTATTAGGGT 29955 47 100.0 29 ............................................... CCTTTTCCGTCCCCTGTATTGCTGACGGT 29879 47 100.0 30 ............................................... CCCTTTTTGTTGAATCTTTGAAAAAAGTTC 29802 47 100.0 30 ............................................... CCTTTTGCTTTGTCTTTCTGTACAATATAG 29725 47 100.0 30 ............................................... ACTATATTCCCGATAGAGTTCATTAATGGG 29648 47 100.0 30 ............................................... GGTCGCTCTCAATACATCAACAACACATAA 29571 47 100.0 30 ............................................... GGGCGTTCTTGGCTACTGCAAGTTCATACA 29494 47 100.0 30 ............................................... CGAGTACACATTTGGCATTAAAAGATTCAT 29417 47 100.0 30 ............................................... AAGCAATTCTTTATACATCTCTGTTATTTT 29340 47 100.0 30 ............................................... GTAGTACCAATCGCGGTCTTCTTTATTGTC 29263 47 100.0 30 ............................................... ACAATTTGGGTGCATTGTTTTTGCCCTCAT 29186 47 100.0 30 ............................................... ACCCTACCTTTATACAACTTCGAGTGCTTT 29109 47 100.0 30 ............................................... GTATAAATCTAATATCAGTTGCTACTAATC 29032 47 100.0 30 ............................................... TTACAATCGCTATGACTATTACCATAATTA 28955 47 100.0 30 ............................................... TTCTCGCATGATTTCTTTTTCATCCTTTCG 28878 47 100.0 30 ............................................... GTGAGTATCTCGCGGAGTTTGTTTGCATAT 28801 47 100.0 29 ............................................... CCTTTCACAAGCAGCTCCCAAGTTTACTT 28725 47 100.0 30 ............................................... TCTTCAATCGCAATCGTTCTACTCTTAATA 28648 47 100.0 30 ............................................... AACGCAAATCAAGTTCCTCAATGACTGGGT 28571 47 100.0 30 ............................................... CTCGTCGTGTATGGCTTCGAGTATGATATT 28494 47 100.0 30 ............................................... TTAAATATATATTGCCTTCAATTCAATTAT 28417 47 100.0 29 ............................................... GCATATACTGTTAGACCGTATGGAAAGAG 28341 47 100.0 30 ............................................... CGTTCGTTGGTTCGTTCGTTGGTGCAAAGG 28264 47 100.0 29 ............................................... CCATTTTGGCGGGGCCTATCTTTCGCAGC 28188 47 100.0 30 ............................................... TACATTGATAGAGTCTAATCCTACTACATT 28111 47 100.0 30 ............................................... GACACGGGCGACGGCGTTTGCATAGACGGT 28034 47 100.0 30 ............................................... GATAGTTTGGGAGCAACTTTGTCGAAGTCC 27957 47 100.0 30 ............................................... AGATGCTGAACAGCTTACGAAAGAGGTACA 27880 47 100.0 30 ............................................... AAAAGTTAAAGGACTTTCGTTTGATATGAC 27803 47 100.0 30 ............................................... GCGTCCGATAGCGGATAACATGGCGGTCAA 27726 47 100.0 29 ............................................... TAAGTCCGACAATATGTTTTTCAACGAGA 27650 47 100.0 30 ............................................... TGTTTATCAAATAGCAATCAAATCTTTTTA 27573 47 100.0 30 ............................................... CCAATATCTCTCCATTCTATTCAAAGTCTT 27496 47 100.0 30 ............................................... ATTCCTTTAACAATTGTCTTATTGTCATAG 27419 47 100.0 30 ............................................... GCCCGTCTGTATGATGTTTACACGTCAGCG 27342 47 100.0 30 ............................................... ACATCTTCCCGAGGCTGGAACGGGCCGTCT 27265 47 100.0 30 ............................................... ATAATTATTTATTTATTTCTTTCCATAAGA 27188 47 100.0 30 ............................................... TCCGTAAATCGTCACTCCGTCAATCGCATC 27111 47 100.0 29 ............................................... AGCAAGATCCTCACAAGGAAAATAGCGCT 27035 47 80.9 0 ..............C...............C.GCC.GG...T....A | GT [26994] ========== ====== ====== ====== =============================================== ============================== ================== 47 47 99.6 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : CATCGTTATATAAATGTTTTTCTGGAGAACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTACCAACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGGAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGGCATTGTGCTAGTAGTGAGAACGCAGCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAACAAAAAATCCCGTACTTACACGGGATTTTTTATTGTTAATGAGTACGGTTTTTCTTATTCTAATAGTCTTGTTAATCTGCTGATTATTAGTTGTCTACTCTGATTCT # Right flank : AAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCAGGCGTCATCTCCGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCTCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCCCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAAATGCTTACGGCGTAGGCGTGACTCAACATACGGTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //