Array 1 960190-959142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSEQ01000001.1 Providencia rettgeri strain CCBH11880 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 960189 28 100.0 32 ............................ TTTATAGGCATTAAGAACAGTTCCCCGAATTA 960129 28 100.0 32 ............................ TTGCATTCCTAACTCACCAATACCAACTTGCT 960069 28 100.0 32 ............................ AGAATCAGATAATGCCTTTTCATAGCATTCTC 960009 28 100.0 32 ............................ AACGGAAAACAATCATGCACAATCTCGCAGAA 959949 28 100.0 32 ............................ AGACACACGCAAGCAACCACGGCTACGCAAGC 959889 28 100.0 32 ............................ TCATCGGGCTCAACAATACGGCCATCAAATGG 959829 28 100.0 32 ............................ TTTAACCCGAGGCTCTGATGGTTCATTAGGCG 959769 28 100.0 32 ............................ ATGATAAATGCAAAGGATGCAAATAATGCCTT 959709 28 100.0 32 ............................ TCTCGGTTCTGCATTTTAGGGATACTTCCCCA 959649 28 100.0 32 ............................ AATGCAAAGATGACCACGGGTTTAAATATTTC 959589 28 100.0 32 ............................ ATGAATTAATGGTGGGGTATGTCTTACTTAAA 959529 28 100.0 32 ............................ CGCGCTCGGTCAGCGTTTGGCGAATGGTATTG 959469 28 100.0 32 ............................ AGTATTAACCTCAATGGCTGAGCTAGAGAATC 959409 28 100.0 32 ............................ AACAATATTGATGCCAGTGAAATTGACGGGCA 959349 28 100.0 32 ............................ AAGTGAAGCCGATTATTTGAAGCTTCAGGATT 959289 28 100.0 32 ............................ AGTTGAATTTGGAATAATATGTGTTTGCCAAG 959229 28 100.0 32 ............................ TCAATGTTTAATAGGTCGTCTTTTTCTTGATA 959169 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCGGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAATACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : TCAGGTGGGTTAAATCTCAACCTTGCTGCTTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 970176-968827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSEQ01000001.1 Providencia rettgeri strain CCBH11880 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 970175 28 100.0 32 ............................ AGTGACAGCTGTTAAAGTGTTTCTTTCTAACA 970115 28 100.0 33 ............................ TTACATGCTCGCGCCAGAGCTAACAGACGATGT 970054 28 100.0 32 ............................ CAATGCATGAGTCTTGTACTCACGTTATCTGG 969994 28 100.0 32 ............................ ATGTCGGGGCAAATCTCTCTATGGTGGGAGTG 969934 28 100.0 32 ............................ TCGAAATAAGTAACCGTAACGGCAAGGCTATT 969874 28 100.0 32 ............................ TTGAGTCTATCGCTTTTTATTTGAGTTACCCA 969814 28 100.0 32 ............................ AGAAGAAAGGTCAACATCAAGATACTCGTCTA 969754 28 100.0 32 ............................ AGTCGGGCAATACGATATATCAAAATAGCATT 969694 28 100.0 32 ............................ TTTGATGTTACAGACGGTGAATCCACGTTTGA 969634 28 100.0 32 ............................ TTTCATCAAGCTCTGGAGTTAGTTTTAAAGAC 969574 28 100.0 32 ............................ ACTGTAGGAACACCTAGGGCTTCAGAATTGCT 969514 28 100.0 32 ............................ ATTCAAAACCCTTTTTTTGATACGTATGAATA 969454 28 100.0 32 ............................ TATCTAAGGGAACCAAAGTTACAGTAACTGGT 969394 28 100.0 32 ............................ AACATCCTCTGACCTTAGTTCTGACAACGAAT 969334 28 100.0 32 ............................ CAAATCGCTGTCGTCGTGGTCATAGTCAATAT 969274 28 100.0 32 ............................ TTCATCTGACATGTGCTGCGGTCACATACGTT 969214 28 96.4 32 ............A............... TGACGACGTAACGGCTCGGCAATGAAATCATT 969154 28 96.4 32 ............A............... CTACGGCAAAGGTGAAGAGATGGAGCTGCAAG 969094 28 96.4 32 ............A............... ACTTAGCGAATTTAGTGCCAATTTCCACAACT 969034 28 96.4 32 ............A............... AATGATGACCATAAGAAGCAGTATGTTAATGA 968974 28 96.4 32 ............A............... ATTACAGATGTAGAAAATAAGAGCGCAGAAAC 968914 28 96.4 32 ............A............... ATGCTATCAGCCATTGCATTGTTGGCCTCTTT 968854 28 85.7 0 ..........G.A.........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.4 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACTTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //