Array 1 21344-15139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDVE010000019.1 Phycicoccus sp. CSK15P-2 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 21343 29 100.0 32 ............................. AGGTGCTGAAGGACCTGTCCCCCGAAGCCCGG 21282 29 100.0 32 ............................. CAGTGGGGCGAGTGGGTCCCCGAAGACCAGAC 21221 29 96.6 32 ............................C TTTTCGCGACCACGCGGGGGTCAGCCGTTCGG 21160 29 96.6 32 ............................C ATGTGGAGCCCTCTCATCCGGTCAGATCGGAT 21099 29 100.0 32 ............................. CCGATCAGCCACGCAGCAACGAGTGCGGCGAC 21038 29 96.6 32 ............................C ACGCCCTCAGCTCGGGCGCGGGCGGTCTTCTT 20977 29 100.0 32 ............................. CAGCTCGTCGGCGCGCTCGACTCGCGCGAGCG 20916 29 100.0 32 ............................. CCCGGACGGTGACGGCCGACCCCCACCGTTCT 20855 29 96.6 32 ............................C CGACAGGCGTCACTGTAACACGAGGTTCACGC 20794 29 96.6 32 ............................T GACACCGAGCCGGCCGACCAGGCCCACCACGT 20733 29 96.6 32 ............................T TTCGTTCATTACTTGAGCATTTCTCGAATAGT 20672 29 96.6 32 ............................C TGGAAGGTCTCGGACACGGGCGCGGCGAGCAC 20611 29 96.6 32 ............................C CTCGCGGGCACCTCGTGGTTCATCCTCCCGGA 20550 29 100.0 32 ............................. GACACGAACGTCCGCATCAACTCGGGCGAGGT 20489 29 100.0 32 ............................. GCTGCACTGAGACTCGAACGGTTCGAGGGTGG 20428 29 100.0 32 ............................. TCGACGTAGGTGACGTGGTTGCCCTCTCGCAG 20367 29 100.0 32 ............................. CTCGAGGCCATCAACAACCCCAGCCAGGAGGG 20306 29 100.0 32 ............................. GCGTGCCGCACGTTCAGGAACGTGGAGAACGT 20245 29 96.6 32 ............................C AGGTCGAGGACGATCCCGTCCCGCGGGCGGCC 20184 29 96.6 32 ............................C GTTCACATTGGCGCGTCTGTTGAGCCTCCCCT 20123 29 96.6 32 ............................C CAGGGTGGCTCCGGCTCCCAGGGTGGCGACGG 20062 29 100.0 32 ............................. GACGGAGACGTCGTCGCCGGCGGCATCCAGCA 20001 29 96.6 32 ............................T CCTGACTGGGTTCTCGCGGTCTTCTTCTTCGC 19940 29 96.6 32 ............................C CCCAGCGCGAACCAGGCCGACTTCCCTGCCGC 19879 29 96.6 32 ............................C TCAGCGTTGCAGCCGTCGTCGACGCGCTCATC 19818 29 100.0 32 ............................. TTCACGAGGACCTCACAGGAGGGTGGGCTGGT 19757 29 100.0 32 ............................. CACGGTGTCGGAGTAGGCCACGGTGGACCCGT 19696 29 96.6 32 ............................C GCCCTGTTCCGCCGTCAGGAGTTCGATGGGGT 19635 29 96.6 33 ............................C ATGGTCATGCGGTTCAGCGTAGAGATGCCGTTG 19573 29 100.0 32 ............................. AACCAGCCCCACTCGCGGGCGGTGAACTCGAA 19512 29 100.0 32 ............................. TAGGACCCCACCATCTTCCCGTCTCATGGCGG 19451 29 96.6 32 ............................T TGGCGTCGAGTGTTGCGAGGCGGGCTTCATGC 19390 29 96.6 32 ............................C CTCAACAGCGTATGCGTCGGTTCCGTCAACAA 19329 29 96.6 32 ............................C AGGCTTAAGTGACGACCCCTCGCTCCCGGTGA 19268 29 100.0 32 ............................. TACGCGCTTCGCAAGATGCGCGCGCTAGCAGA 19207 29 96.6 41 ............................C ACGAGCAATCCGTGCGGCGCTTCTTTTGCAGCCATTCCTCT 19137 29 96.6 32 ............................C CGTACATGCCTTGGATCGTGTACTCTCCGCCG 19076 29 96.6 32 ............................C TTTGTTGTGAGAGAGCCGGATCGGCCAGGATG 19015 29 96.6 32 ............................T GTCGCCTGAGGAATGCGTCGGGTTCGACATTC 18954 29 96.6 32 ............................C TGGGTTTTGCGAGAGTTAAATGCCTGCAATTC 18893 29 96.6 32 ............................T CACTCCGGCTACTGACGGTAAGGTTACCGACA 18832 29 100.0 32 ............................. ATAGCGGCGATCAGCCCGGTGACGATCAGGAT 18771 29 96.6 32 ............................C CGATGAGCACTGCGGCCGCCTATACGAAATCC 18710 29 96.6 32 ............................C GGCCACTGCGTGGCGGCGTCGGCGGGGATCAA 18649 29 100.0 32 ............................. GTTGAGGAGATTAAGACTCGAATGGGTCGCCG 18588 29 96.6 33 ............................A CCCTGACCAGGCACCCATTTCTGCTGAGCGTCG 18526 29 96.6 32 ............................T TTTTGGGACTGAGGTTCCGGAGGTTCAGTCCA 18465 29 96.6 32 ............................C TTTCTTCAACACCTTAATGTGGTTGTTTGCAA 18404 29 96.6 32 ............................C GACAGCTCCTCGAACGCACGGAACTGCGCGAT 18343 29 96.6 32 ............................C CGTCATCAGCGGCCAGGTGCCCTACACCCCCG 18282 29 100.0 33 ............................. TTCTCCTCCTCGGCGTCGGCGTTGTCGTAGGTC 18220 29 96.6 32 ............................C TGCACACCCCCGCAACGGGGGAGGAAAGGGTA 18159 29 96.6 33 ............................C GTCCCGGAGACCTCGGCGAGCCACGGCCCGAGG 18097 29 100.0 32 ............................. TCCCTCAGTTCCGGGAACCAGAACAGAAACCT 18036 29 96.6 32 ............................C CGGGAGGCGAGGACGAGGACCACGAGAACCCG 17975 29 96.6 32 ............................C CGGTGCGGATTCACTGCCCGGTTCCGTGTCAG 17914 29 100.0 32 ............................. GTTGTGGCGGCCATGCTGCTCATCGGTGAAGT 17853 29 100.0 32 ............................. CAGTCGCCGTCGCGGGCCTGCGGCGGTGGGTC 17792 29 100.0 32 ............................. GTCGGGGGCCTCCTGGCCCGCAACGAGGCGAT 17731 29 100.0 32 ............................. TCGTCCTCGTGCCAGAGGTCCATGCTGTAGAC 17670 29 96.6 32 ............................C CGTCCTCCTCCATCCCGATGACCCACATCGCT 17609 29 100.0 32 ............................. CGATGCTGGCCGTCGAGCGGCTCACGTCCCGC 17548 29 96.6 32 ............................C TCCGTCGAGCAGACCGGCTACCTGATCGCCCG 17487 29 96.6 33 ............................A GTCGTCCAGGAGGACGCGGACCTCCTCCACGGT 17425 29 96.6 32 ............................C GCTCAACTGGGTCCGTGGGCGCCGAGGGTGTT 17364 29 100.0 32 ............................. CCAGCACGGCGGGTGCCGTCCTCGAGGGTGCG 17303 29 100.0 32 ............................. CGGACGTAGCTGGGGTGCGGGTGAAAGTGCCC 17242 29 100.0 32 ............................. ACGTGGACGGCGCTGGTCCGGTACGGCGGCTG 17181 29 96.6 32 ............................C TCGACGAGGATCTGTTCACCGGTGACGCTGTA 17120 29 96.6 32 ............................C GCTGTGATCGACGTGACCGCCTGCCGGTAGTC 17059 29 100.0 32 ............................. CGCCTGTTCTGGCGCCCCGAGGGTGAGACGTA 16998 29 96.6 32 ............................C CTCACCGAGACCGTGCTCGCGCCCGACCTGCA 16937 29 96.6 33 ............................C CACCCGGTGAGCGTTCCCGCTCCGGCGTCGTCG 16875 29 96.6 32 ............................C GTCAACGCCAGCCGGGCTATCGAGTACCAGTC 16814 29 100.0 32 ............................. TTCGGGCCCCTCATCTACCGCTGCGACCGGTG 16753 29 96.6 32 ............................A ACGGAGACCGACGTGAGGACCGTGCACGAGCC 16692 29 100.0 32 ............................. TACTCCTCGATGAAGGCCTCGGGGGAGAGGGA 16631 29 96.6 32 ............................C TCATCACGATCACCGGCAACCTGACATCGGAC 16570 29 96.6 32 ............................C CGCACTCCGTTCGGGGTGCTCGCTGACCTGGT 16509 29 100.0 32 ............................. CGCAGCGAGGCTGCGACGTCGTCGGCCTGGAT 16448 29 100.0 32 ............................. TGCGCCACACGGCCAGTCGACGGGGACGCCAA 16387 29 100.0 32 ............................. TACCACGGAGCCGGCTTCGAGGCCGCCAGGCG 16326 29 100.0 32 ............................. TCGCTCGCCGCGGTCTTCGACTCTCTGCCTGA 16265 29 96.6 32 ............................C GATGATGGCGACGGCGCGGGCTGGGCCGGTGG 16204 29 96.6 32 ............................C CCGACTGGGTCGTCCTGGAACATCGCGTACTG 16143 29 96.6 32 ............................C GTCGTCGCCAAGTCCAAGGCCGACATCGAGGC 16082 29 100.0 32 ............................. CTCGAGGAGTTGGCGCCAGGTCGTCCACTGCT 16021 29 100.0 32 ............................. CACTTCGCCTCCTGCGGTCGCTCTGTCCAGTC 15960 29 96.6 32 ............................C GGCATCACCGGAGCCATCCGCACCGCACTGTC 15899 29 100.0 32 ............................. GACGTCGAGGATCTCGGGGAGACCGTCCGGAA 15838 29 100.0 32 ............................. GACTGATCCCATGGCCAAGAACACTCCGCAGC 15777 29 96.6 32 ............................C GGGTCCAACTTCCGGCTCGTGCCGATGGGGAA 15716 29 100.0 32 ............................. CCCTGACACATCCGCAGACAGCGCGGCGGGTC 15655 29 100.0 32 ............................. CCCTGACACATCCGCAGACAGCGCGGCGGGTC 15594 29 100.0 32 ............................. CCCTTGCCGACCTGGATTTCCGCGGACGCCGT 15533 29 100.0 32 ............................. ATCATGTACACCGCGCACCGTGACGACACGGC 15472 29 100.0 32 ............................. CGGTGGGGCCGGTGACCGCCGTGGACGAGCAG 15411 29 100.0 32 ............................. GACGCGACGCCGGAGAAGAAGCCGCGCCGCAA 15350 29 93.1 32 ..........................TT. CGCGTCACGATCCGGTGCGCTCTCGTCAGAGC 15289 29 93.1 32 ................T...A........ ATCACGACAGGACCGAGCACGGCGGTGATGAA 15228 29 93.1 32 ..............T.............C CCCATCCCCGCTGTCGAGCTGCACCAGGTGTC 15167 29 93.1 0 ............G........A....... | ========== ====== ====== ====== ============================= ========================================= ================== 102 29 98.0 32 GTCGTCCCCGCCCACGCGGGGGTCATCCG # Left flank : TTGGCCACGATCGTGCGCGATGTACTGGGGCTCCTCGGCGTCGGGGCAACTCAGGACGAGGGAGACCTGCTCGCCCTGTGGGACGAGGCTGCCGGCTCGGTTCCGGGTGGGACGAACTGGTCCGACTCGGAGGTCGCGGCATTCCTGGAGTCGGGGTACGCCGTCCTGAGCGGCCCGGAGCTGACCGAACCCGAGGTCCCCTGGTGACTGTCGTCGTCCTCGTGGCCGTTGCCCCGGGCCTGCGTGGGCACCTGACGCGATGGATGGTCGAGGTACAGGCCGGGGTCTTCGTCGGCTCACCCGGTCGCAGGATCCGGGACCGTATATGGGCCGTTCTGGAGGACCGGGTTGGTGACGGGCATGCCGTGATGATCGAACCCGCTCCCACCGAGCAGGGATGGGCCGTGAGGACCGCAGGGCGGGAGCGCTGGAGGCCCGTCGATTTCGACGGACTGACTCTCATGGCCCGCCCGCGCGTGCAAAACTCCTGATCAGCAAGT # Right flank : TTCAGGACCCGGCCGCCCGGCTTGAGCAGGGCGTGGTTCCCAACCACGCGGGGTCCGGGGCGCGTCGCGGCACTCCTCGCGTCTCGGCGTCGTCACGGATCGGGAAGGTCACAGCCGATCGGCCTCGGCGAGCAGAGCAGTCGCCCGGCGCACCATGGCCCTGGCCTTCTCGACGGTGATGAGGCTCGGCGAGTAGTGCGCGGCATCCTTCTCGGCCAGCAGGCGTCGGAGCTTTGTGGGCAAGGTCGTGTCGCGGAGAGCGACCTCGCCGAGCAGGTTCACTGCCTGAGCATGATCTTGTCCTCGGCTCCACCTGCCGAGGCTGAGCCCGCAGATGGCATCGGTAGCTGCGATGCCGGCCAGCACGGCGAGAGCGGCTGCGACATGAGCCTCGCGCCGCTCCTCTCCGAGAACGAGCTCAGCGACGTCGAGAAGCGCCTGGGCCTGGTCGCGACGAGCGCGGCCTTCCTTCGGCGTGCAGGTGACGACGCGGGTCGGTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCACGCGGGGGTCATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCAGGCGGGGGTAATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //