Array 1 327903-328460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPT010000001.1 Listeria booriae strain FSL L7-1658 NODE_1_length_759285_cov_48.928922, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 327903 30 100.0 36 .............................. ACTTTTGCCTTTTTGGATTACGAGGAAGTTAAGTTA 327969 30 100.0 37 .............................. ATGGGAAACTATGCCGTAAGTGCTAGGGCATACCTCG 328036 30 100.0 36 .............................. AAAAAATTGTCGTTGGTTAATTCACGGGGCGATACG 328102 30 100.0 36 .............................. TTGCATATGAGCGAGAGATTTTATTAGGAGGTCAAA 328168 30 100.0 36 .............................. TACTTCGATTATGAACACTTTTGGTATAAGATAATT 328234 30 100.0 35 .............................. TGTTATTTTTCGGCCAAAAGACTTACCGAGTGAGA 328299 30 100.0 37 .............................. CCTTCCATGTGACGCTTTGGCGCAATCGTCCCGTGTC 328366 30 100.0 36 .............................. ATTACTTTTAATAGCTCACTTAGTTTTATCTGATCC 328432 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCGTTAATCAAACGCCTAGATCGCACAGAGATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTTTTGTGGGGGAAAGAGGGGATGGTAAGTGGTGTTTGGAAAGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTTGGGAATGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTTTCTATCCACTTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTTGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAACCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 63469-63950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPT010000005.1 Listeria booriae strain FSL L7-1658 NODE_5_length_322823_cov_51.036691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 63469 30 100.0 36 .............................. AAGGACAAACCAAGTGGGATAGAGACCGCAAGGCAC 63535 30 100.0 36 .............................. ACTTTTGCCTTTTTGGATTACGAGGAAGTTAAGTTA 63601 30 100.0 36 .............................. GCTATTTGAACAAGCTCAGTTGGGGTACACTTCCGA 63667 30 100.0 35 .............................. AAGGACTAAGCGCTAAGCTAAACATGCCTGCCCCT 63732 29 96.7 36 ..........-................... ACCTCTACAGAATCCTCAGTTGGGGAGTACTCGCTT 63797 30 100.0 37 .............................. AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 63864 30 96.7 27 ........................A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [63921] 63921 30 73.3 0 ......CC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 95.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAATGACGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATTGGGTACCT # Right flank : TTAGTTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAATAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATTTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCGTCATGTTTCTGAA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 17299-17064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPT010000011.1 Listeria booriae strain FSL L7-1658 NODE_11_length_106000_cov_61.083976, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17298 36 100.0 30 .................................... TTACCGGCTACAATTGTAGACAAACGAACA 17232 36 97.2 30 ..........C......................... GCGCAAAAGGTGCTGGCGTTAACTTCAATG 17166 36 100.0 30 .................................... CGAGTGATACAAAAACATACGCCAAAGCGA 17100 36 86.1 0 ..........................TG.A..C..A | A [17069] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCCTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCATAATCACACGTACTGAATAGTAATTTCCCGTACTAAATCAACAAAAAAACACCATAAACCGTATCTTACACAGCGACCTACAGTTTTTCCCGTTCTTTCTTATCGGAGAAACGGGGATTCTGATGGTTGGATGAAATGTACTCGTTGTGCTGGTGCTGGTTTCAACGCTTATAATGTTGGCTGCGTGGCAATTTTGTGGCAAATAATTTTAAGATGGTGAGAGGTTTTGTTCGTCATCTTCTTTGTTGTGTGCTGACTTGTTCTCTTCACAGCCATTGTAATTGGAAATATTATTCCTCACTTATACACAGCAGAGGTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCATGCATACAAGTACAACGGAACAGACAGTAGTTTTAGTCCTCTTCTGCTTTGAGGTAATATACTCACCTATTTCACATACAATAACATA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 21094-20727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPT010000011.1 Listeria booriae strain FSL L7-1658 NODE_11_length_106000_cov_61.083976, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21093 36 100.0 31 .................................... AATTTAAAGTTGGCGATCGCGTGCAAGTAAT 21026 36 100.0 30 .................................... GTGCTTTTGCAGATACTGGAGCATCACAGG 20960 36 100.0 30 .................................... GGATATTTAAAAGCCCGACATAGTTCGATT 20894 36 97.2 30 ......................G............. AAAAATGGAACAACGCTTACTTGTTGCTGC 20828 36 100.0 30 .................................... AAGGCGCATTAGATAAATTGAATACCGCTG 20762 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 97.7 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCGCCTTGAAGTGTGATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGGTAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAAACTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCCACTCTCTCGGTATGTCCAGAACTCTTTAAATATTGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 43791-43565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPT010000009.1 Listeria booriae strain FSL L7-1658 NODE_9_length_111458_cov_43.830626, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 43790 30 100.0 36 .............................. ACAGTGCTAGCTAGGCGTGAGGCTCCTTCGTCATAA 43724 30 100.0 35 .............................. GTCGGATGTGCGATCATACTAAAAGAATTCTTCCA 43659 30 100.0 36 .............................. AATCAATTGCACACCTGCATTTAAAATTTGAGGCGC 43593 29 76.7 0 ................-.A.G...CC..CA | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 94.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCATCTTGATGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCGGCTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATAATTGTGCAAAACGGGAAGAAAAATATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGAGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : AATAGGGCATTAGTAAAACGAATTGAATAACAAGAGGGTTAATATCCATTAATACTGAACAATGGATATTAACCCTCTTAATCTATTGGCCTCTATGTTGAAAATTTTTAGTATGCAGTTAACAGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACATTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACAATTTGATTTGCGAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAGTGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTCGCATAATA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 47618-47911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPT010000009.1 Listeria booriae strain FSL L7-1658 NODE_9_length_111458_cov_43.830626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 47618 31 100.0 34 ............................... CCGAGCCTTGCTGGCATGATTCTGTCCATGAAAC 47683 31 100.0 35 ............................... TGTTTTGTCATTATAAAACCTCCAATTTGAATTTA 47749 31 100.0 35 ............................... GACATCCTTCAAAGTGAACATGCCCTTATCAATAA 47815 31 100.0 35 ............................... GATACCACCCATCGCATTGAAGGATACGCCAATTT 47881 31 96.8 0 T.............................. | ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 35 AATTTACATTTCACATTACTTAGATAAAAAC # Left flank : CAGCTCAACTCCCCTATTATTAAGAGCAAGTTCAAATAGCTCAATGAAACTAGTAACAAGCAGAAAGGTTACAGCTACGATGACAAAAGTTAGCAAGGCAAGTGCAGCTGTTGATCGGACTAGGATTAGTTCCAGGTCTTGGTTGGATAGCCGCGGCATTTTCTGTGTATGGTATTATAAGCGAATTTAAAAATAAGACCGCTTACATTATAATCAAACAATACGCCAACAATCACCAGTATAGGAATGATTTGTATGTTTATAAAGATAGCAAACGAACAAAATTATTAAATAAACAAACTGGAATTCCACAAAGACATTTTTCTTAAATGAATACATTAAATTTATGAGGCTGGTACTTTAAGTATCGGCTTTTATTTTTAATACTTAAGCTAGCCTCATATATTCAGGAAATGTGCAGATAATCGCCTATGGGCTATGTTCGCATATTTCTTAGGTAAAAACGATTAGGCGTCTACATCATGATTATTAATTGACTT # Right flank : CTGGTACCCCATCAACGCTTACTTCCATCATACCTCAAACACCCGAATCTGTCGACAGGCAGCCAAATCCTAAATTTCCACTCTCAAACCTTACAATCTGAACTTCGAAAATAGGCTTAAACTCTTTAGTCCCAATACATAACAAAAATCTGTCGATGCCCCCATTATTTTGCACTACTGGAGGTCGACAGATTTTTTCCGCGTTATTATGAATCAAGGTTTTCTGTAGAAATTATCTTGTTCTTCCCGTCTTGCACAATCATCGCGCTATTCGCAGGGATTATTTTCTTTTCGTATTCAAAATTCTTGTTCGAGAAATTCGCTATGACTTGTAGATTTGTGCCGAATGTTGTTTTCTGAATGAGGCGTTCTTTATCTAGCACTTCAAATCAGGCTTCCCATGCTAAAATGCTTCCTATTTTTAATATTATTGGATGCATTTTGGAATAGTCGTCATGGATTTAGTTTACGATTTAATCTTAAGAAACTGATCATTTTTG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 52345-51464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPT010000009.1 Listeria booriae strain FSL L7-1658 NODE_9_length_111458_cov_43.830626, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 52344 30 100.0 34 .............................. ACTTCCCTACCTGCTGGATATAAGGTAGTTGATA 52280 30 100.0 36 .............................. ATATCAGGCTTCGCAGATTGTTAAGAATAGGACTTT 52214 30 100.0 37 .............................. ATGATGGCTGGTAAAACTATCAATTATTCTGTAACTA 52147 30 100.0 34 .............................. AGGCGGGAACGTTGCGACTGGAAGAAGACGAACG 52083 30 100.0 36 .............................. GTTAACTTAGCAAAGCAGCGTTTAAAGAAGATAAAA 52017 30 100.0 35 .............................. AAGACCGTAACCCCACTTTCGATTACGGCAATTCC 51952 30 100.0 36 .............................. GTATATACGATAGCTTTTTGTGCTGCAGTGTTTAAT 51886 30 96.7 35 ............G................. AAACTTAGTCCGCAATCTAATCAATTGCGATTTAA 51821 30 100.0 35 .............................. GATGAAGCTACTAAATTAGTTACAGAAGTTATTTC 51756 30 100.0 35 .............................. ATGTAAATAATGCTAAAAAAGATGGTAGCTTCCTA 51691 30 100.0 36 .............................. TGAACTTTAGGAGAAACGTACTTAAAAGGTTTCATC 51625 30 93.3 36 ............GT................ CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 51559 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 51493 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 96.4 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTAGGGTTTGCTGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCATAGGGAGAGAAGGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : GCGTATCGGCAATTTCACACAACCCATCTACAAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAGAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACTAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCAT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //