Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUW01000001.1 Listeria monocytogenes strain FRR B 2962 FRRB2962_NODE_1_length_1223450_cov_72.8662_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 509856-513393 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUW01000002.1 Listeria monocytogenes strain FRR B 2962 FRRB2962_NODE_2_length_518771_cov_105.459_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 509856 36 100.0 30 .................................... TAATATTTAATTTATTCTCCACTCTCTGGA 509922 36 100.0 30 .................................... CGCTACCATGGCAGAAGTAACAACCGTCAT 509988 36 100.0 30 .................................... CGTGAACTTTTTAGATCTATTCGCTGGAAT 510054 36 100.0 29 .................................... TTTTGCAAGAATGGGAAGGCGAGTATACT 510119 36 100.0 30 .................................... CGGGTTACTAATCATTAAGTCACAATTAAG 510185 36 100.0 30 .................................... TGAAGTTTTAGTGTTATTGTTGTAACCTGC 510251 36 100.0 30 .................................... ATTGACGCAGATTCGTTTTATACAACACCA 510317 36 100.0 30 .................................... TTATGCAGATTTAAGACGTGCAGATTTAAG 510383 36 100.0 30 .................................... AAGATAAATAATACTTCTTCCATTATTTCT 510449 36 100.0 30 .................................... GCGTGCGAGTTTCTGCTAAAACTTGCATCG 510515 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 510581 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 510647 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 510713 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510779 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510845 36 100.0 30 .................................... TTGATTTTTGTACTAGGCTTAGCAGTTAAA 510911 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510977 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 511043 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 511109 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 511175 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 511241 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 511307 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 511373 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 511439 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511505 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511571 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511638 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511704 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511770 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511836 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511902 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511968 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 512034 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 512100 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 512166 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 512232 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 512298 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 512364 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 512430 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 512496 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512562 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512628 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512694 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512760 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512826 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512892 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512958 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 513024 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 513090 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 513157 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 513223 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 513289 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 513355 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [513380,513386,513389] ========== ====== ====== ====== ==================================== =============================== ================== 54 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //