Array 1 552445-552278 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKB01000001.1 Enterococcus quebecensis strain LMG 26306 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 552444 33 100.0 33 ................................. TGTTATCGGCGAAGGAAACACTTATGCTCAGAC 552378 33 100.0 35 ................................. CAATAGAACTCGTCAATTACGAGTACTGGGACACT 552310 33 75.8 0 ......................CTTT..ATTT. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 91.9 34 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : GCAGTGATCATGACGAATGCGCAAGCTAGTGAAAAAACAATGACCATCAGTGCGGTACATGCAGGTAAAGTATTTGTTGACATTTTAGGCAATCATCCAACCAAAGTTGTGTTGGATGAAACTGGTGCAGGAACATTTCCTGTGAATGGTGGAGAAGTTTCTGTCTATGTAAATGAAGAAATTGTAGATCAATTGTGTAAATCGTTGGATGAATAGGGTTTTAAAGAGAAGGTACTAGAGTATTTGGATTATGATTATATAAAAATAGTACGTGACTTCTATTGGAAGAATAATTATACTAAGTATAATAGATAATAAGCTGTAAAATGTATGGATTTTTGGTGCGAACCATAAGTGCACACGGAATCACTGGGGGATTCGCACCAGATTTGAGAGACGAATAGAGGTAAAATTCTATTTTCCCTCATTGTTTTCTCATTTTGCGGAAGGTTTAATGTGGAGAAGTGGCAAATATGTACATAGTTTGTTACTTTTTCACG # Right flank : CCTAAAAAATCGATTCAGAAAAAATCAAATCTAATTCTACAACTACATAAAATACTAACTCAATAACAACAAAATGATCGTTTTGCAAATCCTGTCATTATTAAAGAATTTTCGCTTTATAATCTAGCTACATACATTAAACATTTCGATAATAACCTGAAAAAAATCATGATAACAGGTACCTTTAAAATTTTTTGTATCTTACTTACTCAAGGTTTGTTCAATCTGTTCAGCTTTTGTGTTTTTTTTGGTATAATAGATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCAAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTAGTTATGGCAGGTGCAGGTAGTGGCAAAACGAGAGTCTTGACCCACCGTATTGCCTATTTAATTGAAGAAAAAGACGTCAATCCATGGAATATTTTGGCGATTACTTTTACCAATAAGGCTGCTAAAGA # Questionable array : NO Score: 7.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.09%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 611312-610868 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKB01000001.1 Enterococcus quebecensis strain LMG 26306 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 611311 34 100.0 35 .................................. TACTGTCGGCAACCTTGCCCACTAATGTGGATTGT 611242 34 100.0 34 .................................. CCAGACCCCCCCTACTAAAAGGGGGGTCTACAAT 611174 34 100.0 35 .................................. ATGTCTGACGTCATATATATGGAATATAACAATGA 611105 34 100.0 34 .................................. TACCTTCTATAGCGGGATTTTCTTTCATCTCCCT 611037 34 97.1 32 .................................T AATATCACGAATTGAAAGGAAAATGTTTAGTG 610971 34 100.0 36 .................................. AATTTTAGTTTTAAAAGAAAGAGTCACGTCAAAGCT 610901 34 76.5 0 ........T...TC...C.....AAC..G..... | ========== ====== ====== ====== ================================== ==================================== ================== 7 34 96.2 34 GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Left flank : AGAGATTTAATTTTTTACAAAAAAACTGGGCAAAGGAAGATCAGCAGATGTCCTTAAATTTTGAAGAACAGAGCATGGTCGCAGAAGATAATTCAGATATTTTTGAAGAATTTCCCCAAGTAGTTTGGCAAAAGCGGACATTAGGGGAAGTTACTCACATTTTTAGTCATTTAAAATGGCATATTTTAGTGTTTTATGGACGTCAAACTGGACTAATGTCTATAGAGAAAAATCAAACTTGGGCAACAAAAGAAAATTTTTCAAATTATGTTTTTCCAAAACCTCAGCAAAAAATGGTAGAACTTTATAATCAAGACTTTAGACCGAAAGATTAACTTTTTGGTGCGAACCCCAAGTGCCCATAAAATCCCTAGGGGATTCGCACCAGAATTTTGATGATTTTAGCGTGAAAAGAGGCTTTTTCTCATTTTAATTTAATGTTATACTGGTTCTATAGGTGAAATGGTGAAGATATGTCATGTATTTTTATCAATTTCACA # Right flank : AACATACCACCAGCTACTACTTTCTATTTAAAAAACGAGCTATTTCGGATTCTCTATCTTCTTCAAAATCTCCCCATCTCAACCTCTAAATAGCAAAATTAAACTATTTATTCCAATAGATATTTCTCATTCCTATAAGAAACCAAACTCCGTAGTATGCAAAGTTGAAAATTATGATATAATTGTATTGATATCGGTGTAATGAACACCCAAACGAAGAGTAATCAGCTTTTATAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGACGGACATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGTGAGTATTCCTTGATTGGCGTGAACGATCATACTTTGGTGACAGAGTCTGATGGGCGTCGTTGGGTGACTCGAGAACCTGCTATTGTTTATTTTCATAAAAAATACTGGTTCAACATAATAGCGATGAT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 84073-83768 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKB01000015.1 Enterococcus quebecensis strain LMG 26306 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 84072 34 100.0 34 .................................. GACAATAACTGACCCAACCGAATTAAGTGAGTTA 84004 34 100.0 34 .................................. AATTAAATTTTAATCTATATTTTTTCATCGAAAT 83936 34 100.0 33 .................................. TGATGACGTGATAATGAATTTTTTGTTGGCTTT 83869 34 97.1 34 .................................A GTCAAACATATGCCACAAATATAATGTTCCCAAA 83801 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================== ================== 5 34 99.4 34 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT # Left flank : ATGGCTATCCGCCATTTTTATGGAAGTAGGTGCAATGCATGTTAGTACTGATTACTTACGATGTAGCAACTAGCTCGAAAAACGGAACACGTCGTTTGAGAAAAGTAGCTAAAAAGTGTCAAGATTACGGGCAACGTGTTCAAAATTCAGTTTTCGAATGTATAGTTGATGCTACGGAACTGACAAGATTGAAGAAAGAATTAATAGATTTAATTGACGAAGATGTAGATAGTCTGCGTATTTATCGGTTAGGAAATAACTATCAAAATAAAGTAGAGCATATTGGGGCGAAAGAAAGTTTTGATGTAGAAGCTCCTTTGATATTTTAAGTAGTCCAATTTGGTGCGAACCCGAAGTGAACATAAAATCACTGGGGGATTCGCACCAAAAAATAATGATTTTTCGGGCCTAAAACACCGTTTTTCTCATTATAATTTAATTTTTTCGTTCTTTTTTGTGAAATTGTTGAAAATATGTCGTATATATTTGCCGGTTTCACG # Right flank : TTTGAAACATAGTACAAGTTGGGATGATTTTCGTCTAGCTCTGTATAGAGAGTTAGACTTTAATAAAAAATGCAAAATAAAATCTCTAAAAAGATCATATGATATATATATAAGACTGTTTAGGGTCAGTAAAACTATGTAAAAGAGTGACTAGGATGTATAATCCTAATCACTCTTTTCGTTATATATTTGATATGTTTTAGAGGGAAGCGTTGTAGATATTAAGTTTGTTTTATATACGATCAGAATAAAAATCATGGAATTATATCCTTAAATAACAATTCGTGTTAAATCAGACGATACAAGAAATTCTTAATAAAGATAAGTTTATCAGAAGAATACGATTATTATTTTTTGTTATTTATTTATTTTTTCTTGTTTTATTTACTAACAAGAAATATGTTTAGAATACCTATTGTTTGTTTGATCCTTAAGTATGATATAACGTTTATTTTAGTTTGTCAACATTATTTATTTATATATTTTATTTTCTAATTATT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 278251-277742 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKB01000013.1 Enterococcus quebecensis strain LMG 26306 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 278250 34 100.0 35 .................................. AATTTAAAATTGATTTAAAATTATCGTCCATTTTT 278181 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 278113 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 278045 34 100.0 34 .................................. CATTTTTGAGGAGATATTAGTCAAGGAATTAGGA 277977 34 100.0 34 .................................. GATTCTTCACGTTTCACATAATTTGCAAACCCGC 277909 34 100.0 33 .................................. AACCACTCCTACATCCTCAATTGATTTTTGGAT 277842 34 100.0 33 .................................. ATGGCACTTTTTCCCATGCCCTTGATTTTTTTA 277775 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 8 34 100.0 34 GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Left flank : TGGTGGAGCAGACATCTTACCATTATTCCGCTTAAACAAGCGTCAAGGGAAAGCTTTACTGAAAAAATTAGGTGCCCCAGCTGAATTGTATACAAAGATTCCAACCGCTGATTTAGAAGATGATAAACCATTAGTAGCAGATGAAGTAGCTCTTGGCGTAACTTATGATGACATTGATGATTATGTTGAAGGAAAAGAAGTCTCAAATGAAGCAAAAGAAACAATTGAGTCTTGGTATAAAAAAACACAACATAAAAGACATATGCCTATTTCGTTTTTTGATGATTTTTGGAAGTAAGAGCTTATAAAAAGAAAGTTAAATGATTTCTTGGTGCGAACCCCAAGTGCCCATGAAATCACTGGGAGATTCGCACCAGATTTTGGGCTGAAAAGAGCTAAAATAGTTCTTTTTTCTCATTTTATTTTAATGTTTTTGCTGATTTGTGTGGAAAAAATAGTAGGTTTTGCTGATTTTAGTCAGATAATACTACTTTTTCACA # Right flank : AACTTGATCAAATGTCACTGGTTTTACTTTAGTGTCTCACTCTGTTATGCAGTGAGTCATAAATTAACCTATCAAAATCAAATCTAAAAAAAAGACTAAACTAGTCTTTTTTTTACGTCTAATTTCAATTAAAAATACCTTCATTTTGCTCAAATGGTTAAAAAAGTGTAAACTTGTTATCAAACATAAGTAAGAAAATGTTTTACAATCACTGTAGTGATACCTATATAAGAAGGTGAATGGAAAATGAAAAAATTATTTAGGAAAAAAAGAGACGTTGACAACGAAGTGTTTCTTTCATCTGATGACACAAAGGAAACGATAGATCATAATAGCATACGAATCCCAGACAATATTAAAGGTCTGACAAATCAAGAAGTAGAAGAACTTTATGCACAAGGTAAATACAATATGGAGGTTGAGGATTTATCTAGAACGACGAAACAAATTATTCTCGATAATTCATTGACACTGTTCAATTTTATCAACTTATTTTTAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: R [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //