Array 1 320-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDQ01000248.1 Vibrio paracholerae strain 490-93 DA89.contig00248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 319 28 100.0 32 ............................ TTTTTGGTGATCAACTGGTGACGGTACATAAG 259 28 100.0 32 ............................ TCATTAGACTGCCAGTGCCAGGGAGTAGGGTT 199 28 100.0 32 ............................ AATGGCGCAACTCACCAAGATGGTGATAGACA 139 28 100.0 32 ............................ GAATCCGAGCGCCTGACGGATACCGACGACGG 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTAGAAAGCCAGTTCCGTTTTCCCGCTGCGGGGCGGAA # Right flank : AAGTACACGGTATTGCACTTTGATGCTGGCAAGGTTCACTGCCGCACAGGCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8-751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDQ01000190.1 Vibrio paracholerae strain 490-93 DA89.contig00190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 28 ............................ ATACTAAAATCGCCGTAAGGGTTTTAAA 64 28 100.0 32 ............................ TTGTACCGGCATGATTATTTCTCCACTTTCCA 124 28 100.0 32 ............................ GGTACAAGGTGGAAACGCAATTAACCATGGTC 184 28 100.0 32 ............................ TTACTTAAAATTTGTTGTTGACAGTGATTGGA 244 28 100.0 32 ............................ TAGGTTATCTAAGGTAACCTCGTCCCCTACGA 304 28 100.0 32 ............................ AATTGAATCCATTTGATTTTAAGAGAGAACGA 364 28 100.0 32 ............................ TGCATCGTCTAGCCCAATACTGCGGACTCCAA 424 28 100.0 32 ............................ ATATGCTTGACCATTGGCTTACGGAACGCCTC 484 28 100.0 32 ............................ TAAAGCGAGTGATAGCGAAGCAACCACGCCAC 544 28 100.0 32 ............................ ATCCATCGCGTAGCCGTCGATGTTCTTTGAAA 604 28 100.0 32 ............................ ACTGGCGAAAACCAGCCCACTCGTTAGAAGAA 664 28 100.0 32 ............................ ATAACTACGAAGCGGCTATGCCAACCCATTTG 724 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGTCAGG # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 270-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDQ01000254.1 Vibrio paracholerae strain 490-93 DA89.contig00254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 269 28 100.0 32 ............................ TCAATCCGTTCCAGAATATGGCATGGCGTTTT 209 28 100.0 32 ............................ AATATGTATTTGAATGAACTGGACAGGTTTGT 149 28 100.0 32 ............................ TGCATCGAGGGAAGCTGGAAACGGAGACTGGT 89 28 100.0 32 ............................ AGCACGCGCCATGTCAACGTGGTCAGGGTCAA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGAAAATTGCAGCAGAATCCCAATCTAGCCAGCCTG # Right flank : AG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 689-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDQ01000079.1 Vibrio paracholerae strain 490-93 DA89.contig00079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 688 28 100.0 32 ............................ CTTACGAAAACCACCATGAGAATGATTATTGT 628 28 100.0 32 ............................ GAGCGCCCCCGCATCCAGGAAGAACTCTGAAT 568 28 100.0 32 ............................ AGAGGTTAAACCCTCAGCTTGCGGTTAATGCC 508 28 100.0 32 ............................ TTCTTGGTCTGCTTCTCCCACGTGGTCAGCTT 448 28 100.0 32 ............................ ATTCAGTACACACGGTTACACCAATAGCTCCA 388 28 100.0 32 ............................ GCGATTGTGCGGCCTCTTGTTAGCTTTGACCA 328 28 100.0 32 ............................ ACCAGAAGTCATCACGCTCAAAATCAGGAATC 268 28 100.0 32 ............................ AAGAATGGTTTTGATTTGGACAAAGACATCCT 208 28 100.0 32 ............................ GGCAGTGGGTCGAGCCTTACGCCACTATCAAT 148 28 100.0 32 ............................ GTAAGAAAGAGGTGAGTTTTCACCGAAGCGCT 88 28 100.0 32 ............................ TTCAACGCCGCGGAAGTAATGCGCTTTAGGCT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33-1977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDQ01000069.1 Vibrio paracholerae strain 490-93 DA89.contig00069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33 28 96.4 32 ...........C................ ACAAACTGATCGACAGAAAGGACGCATAAAAT 93 28 96.4 32 ...........C................ TCATTGATGAAGCCCAGACCTTTTTTCCTCCT 153 28 96.4 32 ...........C................ TTTCTCAAGGTGGCCGCGCAGGCAGAGGCAGC 213 28 96.4 32 ...........C................ ATTCACGCGAGCAAAGGCGGTAACACGTTCAG 273 28 100.0 32 ............................ AATCGTCTCGTCGTTGGTCATTTGTCGGATGG 333 28 100.0 32 ............................ TCTTGAATGTCGCTTAGGAAATCAATCAGCTC 393 28 100.0 32 ............................ GCGGTGTTATCCTACGGCCTAATGCGTATCGC 453 28 100.0 32 ............................ GTCATCCATCGTAGGAAGATTATCGTTAAACG 513 28 100.0 32 ............................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 573 28 100.0 32 ............................ GATCGGTTATGCCGGCAACGCATTTGACTACT 633 28 100.0 32 ............................ TAACGAAAACTTGCGAACATGGGGACATGTAC 693 28 100.0 32 ............................ ACAAAGGAGAAAAGGCGATGAGTAAAGTCACG 753 28 100.0 32 ............................ TAGTAAATGCTTAGATTTAGTTTTGCCACCAA 813 28 100.0 31 ............................ AAGCCGAATCATATTTGATGATCGCCTAACC 872 28 100.0 32 ............................ TGGCTAATAGAAGAGTCATTTAACCCAGAATA 932 28 100.0 31 ............................ TCTAGTTCTCTTCTGATAGCTCTGCTAGCTC 991 28 100.0 32 ............................ ACCTAGCGATAATTTTAAGCTGACTTTGTTAT 1051 28 100.0 32 ............................ GTGTCGATCTGGCGGCGGTTCAGCGGGTAATC 1111 28 100.0 32 ............................ TCAATCGCTTCGCATAGTCCTAGTTCGATAAT 1171 28 100.0 32 ............................ ATTATCGCGATGGCTGGCGATAAGATCATCAT 1231 28 100.0 31 ............................ ACTCGAATTTTCAAAATAAAAGGTGCTATAT 1290 28 100.0 32 ............................ AGCAGAGTACCGCTTGCGTTAGGAACAGGCGC 1350 28 100.0 32 ............................ TATATCAGCAATGCGCTCTCTGACGTCTATAT 1410 28 100.0 32 ............................ TTCCCAAAACTCTGCGCGAGCCTTAGCCGCTT 1470 28 100.0 32 ............................ TATAAAGGCCACGAACTGACGGTTAACCGCGT 1530 28 100.0 32 ............................ TTGCTTTCGGGGTGAACATCAAGCGGCTTCTC 1590 28 100.0 32 ............................ GCTTGTAATCGAAATCTTTGCTGACAACGTTC 1650 28 100.0 32 ............................ ATCACGCGTAGCCATCCAGCGCTTTACATCGG 1710 28 100.0 32 ............................ AGCGTGGCGGGGATCCGTAGTGATAACATCTT 1770 28 100.0 32 ............................ GCAATAGAGGATTGCAAGCAATGGAACAAAAC 1830 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 1890 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 1950 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTAAGACGGTGGCGTTAATCCAGTTCCATGCG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //