Array 1 989-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCUN01000063.1 Sphingobium amiense NBRC 102518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 988 32 100.0 33 ................................ AAGAGCTGGCGCGTCGATCCGTCCGAGGAGAAA 923 32 100.0 34 ................................ AAGCTGGAGACGACGGAAGGCGTCGACGCGGGGC 857 32 100.0 34 ................................ ATGAATGCGTCGAACGGCTCCACATCGCTTTCGC 791 32 100.0 34 ................................ ATCATGAGGGCCAGCGTTTTGGCCCGGCGCTCTG 725 32 100.0 34 ................................ CAGCGCCTTGCCAGCGAGCCATCGCGCTCCAGCA 659 32 100.0 33 ................................ ATGGTCGATCCGATCAGAAATAGGCGCTCGAAC 594 32 100.0 34 ................................ GTCGTAACGTCGATCGGCATCAACGACGCCAATA 528 32 100.0 34 ................................ GTCGACGATACCCAGATCATCGGACGGGCTACCC 462 32 100.0 34 ................................ GCGCTTTCGACGCCTCTTGTCAACGGAGACACCG 396 32 100.0 34 ................................ CGTGCCGCCGCGCCGCCGACGTCCAGCGGCCCCC 330 32 100.0 34 ................................ AGATGCTCATAAACGGCCTCGCCTTCGTCTCCCG 264 32 100.0 33 ................................ CCGGATGCGACTGACGATCGGGTCAAGCAGATG 199 32 100.0 34 ................................ ACGAAGGGAATGCTGCACGGGCTTAACGCCACCC 133 32 100.0 35 ................................ ATGTCCGCTGATCGGCGTGATCCCGCGCGGCACGC 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 15 32 100.0 34 GTCGCCTCCCACACGGAGGCGTGGATCGAAAC # Left flank : TATCCGCCATTCATCTGGAAATGATCCATGCTGATGCTTGTAACCTATGACGTGAACACGCAGGATGCGGAGGGGCGCCGCCGATTGCGCCGGGTCGCGCGCGCTTGCCTGGATTACGGCCAGCGGGTTCAGAATTCGGTGTTCGAATGCGAGGTGGACCCAGCGCAATGGACGCGCTTGCGGGCACATTTGCTTGCTGAGATCAATCAGTCGAAGGACAGTTTGCGATTCTACAGACTGGGCGCGGACGGCAAGCGTCGGATCGAACATGTTGGCGCAAGCCCGGTCATTGATCTGGACGGCCCGCTGCTTTTTTGACGACGCGCGAACCTATATCTGTGGGTGAAAGTCCGGCATGTTCGCAATCCGCCGTAACCTCCGGAAAAGCTGAGGTTTGGGCAATGCCGCCATATCCGGGGTCTCATCGGCGGGCCAATTCCGTGGAGTTCGCGCAAAGTTCCAGATTTACGGTTCTTTCTCATTGTCATAAGCAATAGGGC # Right flank : CCGCTGCAGCACTACGCCGGCCGCGTAGAGACCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCACACGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1329-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCUN01000111.1 Sphingobium amiense NBRC 102518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1328 32 100.0 34 ................................ ACCTCGACGCTTGGCGTGTGCCCCTTTCCGGCGC 1262 32 100.0 34 ................................ TTCATCATGAAAAGTATTACCGCTGATACTGACG 1196 32 100.0 35 ................................ TCTCACGCGCAGCCAGCGGCGCAATCTACTCGCGA 1129 32 100.0 35 ................................ ATTACCACGCCACGCGGTCGCAATCACGCCTACCG 1062 32 100.0 34 ................................ ACGATTGGGCGTCCGATTATGCCGACGCCTTCCG 996 32 100.0 33 ................................ ACCACGGCGCGGCTCGAAGTGCAGTTGCAGATT 931 32 100.0 33 ................................ ATCGAACTGCTGCGCAACGCCATGGCTCTGACC 866 32 100.0 34 ................................ CGTATGGAACGCCTGAAGGCCGCGCAGGCGGAAC 800 32 100.0 37 ................................ GCGTCAGGGGCAGGGCGGTGGGGTAAAGGCCGCTCCG 731 32 100.0 34 ................................ TCTATGAAATTCAGCGCCGCGCCGGGCGGCACGT 665 32 100.0 34 ................................ CGCGCCATGATGCTTTTCGCTGCCTCGGCATCTT 599 32 100.0 34 ................................ GGGTCCTTCTTGCGCATGTCGTTGCGATACCGGC 533 32 100.0 34 ................................ ATTCGATCCCCTCGCCTTCGCCCGCATGGAACCC 467 32 100.0 35 ................................ GACGTGTCTATGTCGCCAATTTCGAATTTGGTGCC 400 32 100.0 36 ................................ GCCAATCGCCTTGCCGCATTGGCGGGTGTCGGCCAG 332 32 100.0 34 ................................ GTAGGCGGCCTGGATGTCGAAGCAGCGGCCGCGC 266 32 100.0 34 ................................ TCATATTCCGGCGTGATCCCGTGAACCGCTGGCC 200 32 100.0 35 ................................ CTCCACCCGCACCACCCAATCCTCAAGATTGGCGG 133 32 100.0 35 ................................ GACCTTCGCCGCCGCCTCACTTCCGAAAACGGAGT 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 100.0 34 GTCGCCTCCCACACGGAGGCGTGGATCGAAAC # Left flank : GGTCGCGAGGGTGCGCTCGGAGGTGACCGTCG # Right flank : CGCGATGTTCGTCACGCCATGGGCGGCGCACGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCACACGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //