Array 1 108388-105427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCI010000007.1 Salmonella enterica strain LS4 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108387 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108326 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108265 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108204 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108143 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108082 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108021 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 107960 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107899 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107838 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107777 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107716 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107655 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107594 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107533 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107472 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107411 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107350 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107289 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107228 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107167 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107106 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107044 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 106983 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 106922 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106861 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106800 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106739 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106678 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106617 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106556 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106495 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106434 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106373 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106312 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106251 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106190 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106128 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106067 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106006 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 105945 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105884 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105823 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105762 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105701 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105640 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105578 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105517 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105456 29 96.6 0 ............T................ | A [105429] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126020-124647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCI010000007.1 Salmonella enterica strain LS4 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126019 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 125958 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125897 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125836 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125775 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125714 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125652 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125591 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125530 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125469 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125408 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125347 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125286 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125224 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125163 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125102 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125040 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 124979 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 124918 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124857 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124796 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124735 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124674 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //