Array 1 49-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEV010000003.1 Clostridium perfringens strain GY-15 NODE_3_length_428998_cov_230.728167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 49 29 100.0 36 ............................. GATACAGTTTTTAGTAATGCTAAAGGAAATAAGCTT 114 29 100.0 36 ............................. TGCTACCAACTCCTTATGTTAGGTTAATGGGATAAT 179 29 100.0 37 ............................. ATTTGATTTAACTTTACAAACTTTAAGTAACTCTCTA 245 29 100.0 37 ............................. TTACTTGATAACGGAAGAAGTTCTGAAAAGCTAGAAG 311 29 100.0 36 ............................. TTAAACCTGGTGTGCCTTCTTCTACTTTTAGTTTTG 376 29 100.0 37 ............................. CATAGATGTGAAGGATGTCATAATCAAGGTTCATGGG 442 29 100.0 37 ............................. GTTAAAATCATAAATTAAACTCCCTTTAAATTCTACG 508 29 100.0 36 ............................. CATGAACACTATCAAAGCTAGTTGTAACATTAGAAT 573 29 100.0 38 ............................. ATATTAACCATGTGAAAAACTTTTTCATCAACTTCTCG 640 29 100.0 36 ............................. TGAATCTATTTAGAGAATCAGTTAATGAATTTAAAA 705 29 100.0 36 ............................. AAAGTTAAGGGTAACGATCATGGCATATGGAGAAGA 770 29 100.0 36 ............................. GAGTTAGCAGAGATTTTAAGTGTAATTTTAAAAAGA 835 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 900 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 966 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 97.9 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AGGAATGTAAATGATACAGTTTTTAGTAATGCTAAAGGAAATAAGCTTG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGAACCTAATACAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATATAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAATAACCTCATTAGGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 436605-437158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEV010000002.1 Clostridium perfringens strain GY-15 NODE_2_length_437206_cov_250.500653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 436605 29 100.0 36 ............................. GTAATAATAACATCTCTCTCAAAATTTAACATAATA 436670 29 100.0 37 ............................. ATTAACATTCCTAAAGACTTTTTAAAGTATTATTATA 436736 29 100.0 37 ............................. TTTTTATTGATTTAATATTAACATAATAAAAATAATT 436802 29 100.0 37 ............................. AAACGTTCTGCAATTTTGTATTGCTTGTATCCAAGCT 436868 29 100.0 36 ............................. GTAAAAGTATATTGTTTTACATATTTATCTATTTTA 436933 29 100.0 36 ............................. AATGGAAGACTAAGATTACAAGGCAATAAACTTCAA 436998 29 100.0 37 ............................. TGCTATTAGCTTGTACTATACTAGCTATATTTGAAGG 437064 29 100.0 37 ............................. TAATTATTCCCCTGTTGTTTTATTTATTAAGCTTGTA 437130 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 100.0 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : GATACAGTTTTTAGTAATGCTAAAGGAAATAAGCTTGTTTTATATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //