Array 1 356-56 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LROV01000021.1 Streptococcus mitis strain M3-4 contig00021, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       355	    36	 100.0	    30	....................................	AAGTCACGTTCTCATATTTCTCCACACGCC	
       289	    36	 100.0	    30	....................................	TAGGCTTTAATCGAGTGATAGCATAATCAA	
       223	    36	 100.0	    30	....................................	ACATTGACCACGAAAACGTGGTTGAGGAGG	
       157	    36	 100.0	    30	....................................	ACGCTTTGATTATTCACGATGATAAGGTTA	
        91	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         5	    36	 100.0	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAAATGCTAGAAATTGTCCAGATTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTAAGTGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCCCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAAATTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG
# Right flank :  CACAACGCACTAGACGCACTTAAGGACGAACGTTTTAGAGCTGTGTTGTTTCGAAT

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.16%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//


Array 1 25-258 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LROV01000030.1 Streptococcus mitis strain M3-4 contig00030, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
        25	    36	 100.0	    30	....................................	ATAAACTTTCAGCGAAGAACAAGAAGCGAA	
        91	    36	 100.0	    30	....................................	AGCCTTATGAACAATTCTTCATGGAAATGG	
       157	    36	 100.0	    30	....................................	ACAACTCTATTACTGCTAAAATCCGAGTTA	
       223	    36	  94.4	     0	.................................CC.	|                             	
==========	======	======	======	====================================	==============================	==================
         4	    36	  98.6	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   AAGTAATAACGTCGTAGAAAGCACG
# Right flank :  CATATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAACCCCATTCCCTTGTAGAAAAGCAAAACTGCGAGTCCTACGAATAACACTACCGCTCCTAACCTCTGGCTGGTACCATACATCCTTCTTTCTCCTCGAACTGGAAAGATAACTGCTAGAAATGCTCCGCCGACTGCACCACCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGGCCTAGCTGCTGGATATAGGGGTTCCGAGTAGCATAGCGAAGAACAATAATCGCGGCAAATAGCCCATAAAGAGAGGTAGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAAAACTGCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGATAATAGAG

# Questionable array : NO	 Score: 5.79
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.16%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [25.0-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//