Array 1 83969-84223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZZ010000029.1 Nonomuraea sp. NEAU-A123 Scaffold29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 83969 37 100.0 35 ..................................... GAGCTGACCGCGCGCACCAAGCTCGCCGCCGGCTG 84041 37 100.0 37 ..................................... TCCATGTGGGCTGGGCAACGGCACTTGGCCTCGTTGC 84115 37 94.6 35 .........A..........T................ GTCCTGTTCGGCACGACCGGCGCGGGCAAGAGCAA 84187 37 94.6 0 .........A..........T................ | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 97.3 36 GTGGCGGTCGCCCTTCCGGGCGGCCGAGCATCGCAAC # Left flank : GGACATCCTCCTCCAGCCGATCAACAGCGCGGCCACTACCTCGTTGGAGACCGTCGTCCCCACTGCCTCATCGTCCGGGAGAGCACCGGGAGCTGACCGCGCTTTGCCAGGCGGCCCGGGGTGACGCCCTGGCTGGCGAACTAGTCCTCCCCGATCATCGAGCGAAAGTCCTCCTCTCCCTCCTCGGCGGCACGTGGATCGGCAACGTAGTGGACGCTGACGACGGCCAGATGATGCTGCTCGATCTGGAGTGCTCCTCGCCCTCGAGGTGTCGGCGATCACGTGTTCCATGCTCGTCTTGTGGCCAGATCCTCTTTGCAAGGGAGGTGTGAGTTGGTGATACTCGTGATGGGCTTTCCTGGTCGTGTGCTTCGGAACCTGAAGTGCTCATGCGACGCGCCAGGTGTTCCGAAGGAGATATGGCCCTGTATGTTGCTTGATGGGTGAATTGTTAGTGAATGGTTTCTGGTCTTGAGAGGCGCATTGCCTGATCAGATGCC # Right flank : CATCGGGGTCTATGTCCTCGTCAGCATCGAGTTCGAGTGCCGGCGGCCCGCCGACTACTCGGTGACGAGCTCGACCACCACCTTGTAGGGGCTGGCCCACGGACCCGATCCCTACCCGCGGTCACCTGCATCCGCAGACTCTGACCCGCGTCTGCGGTCAGGACCCACCGTCCGGGTGAAGACCCGCGTCTGCGGTGAGGACGTACGCGCCCACGGTGAGGACCTACGCGTCCGCGTGAGGCCCCACGCGTCCGCCTGAGGCCCCACGCGTCCGCGTGAGGCCTGGGTGGTCAGCTCGCGGCGGTCCAGCCGCCTGCGCGCTGGCGGCCCAGGGCCGTTGCACGCTCTCTTCCTTTGTTTGGCTGGCATCTAAACTAATCAGCGACCGTTGACGTTTGTTCGTTGGGACGGAAAACTAACTCGCGAGCCTGTGCCGGTCAGTTGAAGGAGCTTTCATGCCCTACCGCCCGCCTTTGGTCGCGCACGAGTACTTCGTCGCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCCGGGCGGCCGAGCATCGCAAC # Alternate repeat : GTGGCGGTCACCCTTCCGGGTGGCCGAGCATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.90,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38154-36139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZZ010000045.1 Nonomuraea sp. NEAU-A123 Scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 38153 30 100.0 36 .............................. CCGGTAACCCCGCATAGAAGGGCGACCGCGCTGGTG 38087 30 100.0 36 .............................. CCAGCCACTGGCTCCAACTCATGGCGGTGGCAGAAG 38021 30 100.0 36 .............................. GCATCCGGGGTGACGTCCGGCAGCGCGTTCCTGTCG 37955 30 100.0 38 .............................. GCGTGCAGGAAAACCCGGGCTTTCAGCGATGGGGCAGG 37887 30 100.0 39 .............................. ACGAGGAGAAAACCCTGCAGATGTGGGAAGCCAACCCGG 37818 30 100.0 36 .............................. CGTGGATCGGGTAGACACGAGGGTGATGTACGGTCG 37752 30 100.0 34 .............................. AAGGTCAGCGACCGGCGGCAGCCTGGCGTGCCTG 37688 30 100.0 36 .............................. ATGGCTGCGGCGAGGTAGCCGCGGGTGATCTCGCGG 37622 30 100.0 38 .............................. AGGCGTGGCCTCTCCGCCCAGACCCGGTCTCGACGCGG 37554 30 100.0 37 .............................. ACGGACACGACGGCCCGCTGTGGGTGGCGGCCGACCG 37487 30 100.0 37 .............................. CTGTGTTCCGCGAGCCTGGCATGGATGAGCATCTCCC 37420 30 100.0 37 .............................. CGGAACGACGTGGCGTCCTTGTCCTCCAGCTCGACCG 37353 30 100.0 37 .............................. ACCACCGGGAAACCCGTACGGCGAGCCACTTTGGCGA 37286 30 100.0 35 .............................. CGTGGCACCTCCGCCCAAGCGTCACCGACCCTCAG 37221 30 100.0 34 .............................. GCGGAGGTGGACTTCTGTCGGGAGTGCGACGATG 37157 30 100.0 37 .............................. AGGATCACCAGGACGCCGACCGTCAGCACCACGACGA 37090 30 100.0 40 .............................. ATGAACGGCATCCCGGCCACAACGGGTGAGGTCGGTTCGG 37020 30 100.0 36 .............................. ACGCGAACCTTGCTGGTCTCGTTCATTGATCGTCTC 36954 30 100.0 36 .............................. ACGCGAACCTTGCTGGTCTCGTTCATTGATCGTCTC 36888 30 100.0 33 .............................. AGGCGCCCTTGCCTGGCGCGAACGGCTGCGTTA 36825 30 100.0 36 .............................. GCGTGGGGCTCGCCCAGGGTGGCGTTCCCCAGGCCG 36759 30 100.0 34 .............................. CTAGAGAACGTGCGGATCAACTCGGAGCTGTCCT 36695 30 100.0 35 .............................. CCCGTCTGAACGAGGTATTTGGCGACCGCGTAGTA 36630 30 100.0 36 .............................. GACGAGTCCGAGGGCCTGCTGGTAGGGCGGTCAGCC 36564 30 100.0 35 .............................. AGGCTCGGCGGAGGCTCGCCAGTGGACACGGACGG 36499 30 100.0 37 .............................. AAAGCCTCACCGCCATCCGGCGAGCGGGCGCCACCCG 36432 30 100.0 40 .............................. TTGGCCTGGCGCCAGCGGGCGTACGCCTCGACGGCCATCT 36362 30 100.0 34 .............................. AGCGTCCGCAGGGCGATGCCCAGTTCGCCGGCGA 36298 30 100.0 34 .............................. ATGCCCCTCGACATGACGGCAGCGGCAAGGTCTG 36234 30 100.0 36 .............................. TTGTAGATACGGAACGTGCCGGTGCCCGTGGCCAGC 36168 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 31 30 100.0 36 GCTCCGTCATCACCCTGGAGGGATCGCAAC # Left flank : ATGACCGTCTACCACCGAGCGCTGCGTCGGAAAGTCTCTTACGAAGAACTCATCCACCTCGAAGCCCTCAAACTCGTCCGGCTCTGCCTCGAAGACGTCCCCTACAAGCCCTTCCGCCCCTGGTGGTAGCCGTGTTCGTCATCGTCGTCTACGACACCCTCGCCGAACGCAACCCCGGCATCCTCAGAACCTGCCGTCAATACCTTCACTGGGTCCAACGCAGCGTCTTCCAAGGTGAACTTTCCACCGCCCAACACCGCAAACTCCTTGCCGCCATCAAAGAGCACATCGACCCCACCTATGACAGCGTCCTCATCTACCGAACCCAAGGCCCCCACAACATCCAAACCGAAGTCATCGGCCAAACCCTCGGCAACACCGACCCCATCTTGTAGCCGCATCTATCCTGACCTGGGCTTCTGCACTACCGCCGGATCGCTGCAAAACACCACACCAAACGATGCTCAAATACGCCTCGGACCTGGGACTTTACCCTCGGG # Right flank : AAGGTGGATGACCTCGCCCTGCGCCGGGGCCATCCCTAGGCAGCATCTTGGTCGACATCAATGCTCGGCGGCCCATCGACGTGCTGGATGAACGCTCCGCCGACGCACTGGCCGCCTGTCTGGCCGATCACCCCGGTGTTCAGGCGGCGGCCCTCAGGCGTCGGGTCACGCTGTGTACGTCCCAGTCGCGCGCCTGGCGTTCGTGGCGGATACATGCCGGCCAGCCTGTAGCCATCACCTTACGAACACCTGGAGATACAAGGTGGTGTCCTCGTCCCCTACTGATTGTCCTCGTTCGCCGACTTATGCGCAGGGCCCCTTTGCGCAGGCTTACCTATCGCACACCTATCAAAAACAGGAAATTCGACTGCAGAAACCATCAATGTGGGCTGGTTGGGGCGAGCTCCCCAAGTCATTCCTGTAGCAGGTCGGCCTTGATTACATTCCGAAATACATGCTGCTCAGAGCCTTGATCAATGCTTGACACAACCCTACGCTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCGTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 245092-244634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZZ010000007.1 Nonomuraea sp. NEAU-A123 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 245091 29 96.6 32 .A........................... GTCTCCATGCGGCGCGGCACATCAACTACGTC 245030 29 100.0 32 ............................. GTCCCGATCGAGCTGCGGCGCGAGCTGCGGCC 244969 29 96.6 32 ............................A GCTCGCCAGAGCTGAAGAAGGCGTGGCCGGCG 244908 29 96.6 32 ......................C...... GGCGTCACCTACGGGATCTGGGTGAAGATCAC 244847 29 96.6 32 .....T....................... TGGAAGATCGAAGCCGAAGGGCGGCGCAAGCG 244786 29 96.6 32 ...........A................. GTGCGCTTCTGGTACCGGGTGTCGTCGGAGTC 244725 29 93.1 34 ...G........................T CGTGGTGCTCGATACCGGACACCTGGATTTCCGG 244662 28 82.8 0 ........-...TA........A.....C | G [244660] ========== ====== ====== ====== ============================= ================================== ================== 8 29 94.9 32 GTGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : TGGCGCGCTTCGCGCTTGGGGCTCAGACGATGGTCTCCAGTCGGGCCCAGCCCCGACCCCTGAAGGGCCTCGCTCCGCTCGGACTGCCTTTCTCAGGCGCGCCTTCGGCGCGCAACCCCCTTACGGTCGGCGCTTGCGGCCGCTTGTTGGCCGGAGTCGACGGCCATGATCACTCGCCCGGACCTCGATCTCCAAGGCCTACAACTCGTGGCCCGCTCTATCAGGCTCATGAGATTTTTGGTTGAAGTAGTTAATGTCCGCGTCGCATGCATGCCTGCATGGAGGCCTTCGTGCCAGAGGGGCGGCGGCATGCCTACGATTTCGCTGTGGTGGAGCCGGGGGCGGGAGCGGGGGCGACGCTTCCTGTCCGTGTCTGGTACCGGTTTGGTGGCCGCTATGCGACGCTGCGTGCCAAGCTCGCTGGCGGAGCCTGTCGTGCCGCAACAAACCCCGACATGCGCGTAGCCGCAGGTCGCGTTTATTATGGCTGCTCACGAAGT # Right flank : GCGGACAAGGCCGTGGGCGGATGCCGGCGGCGCGTCACCGAAGCCGAGCGTCCGGCAGTTGGCGTGGCGGGTGTGAGGTGAGAAAGACTGCCCGTGACGGTAAGCGGTCTCCTGGGCGAATCGATGCGCATCGCACCGGCCGAGACGGCATGCTGGTTCGGGCGCCCAAGGGCGCCACTCCCTCCATGCCGGAAGGTGCATGAGTCATGACAGGCAGCCCTCAGCGGGGCGCTTTCCTCAAAGAGCACATGAACGCCGTGCTGGCGATGGTCACCGTCGCTCTGGAAGCACGGGAGAGCGGCGACACCAGTGACCCCGTCGGCCTGCAGGTGATCGGCCGGGTCATCAACGACGTTCCACGCGAGGTCGCCGCGATGGCCTCCCTGCATCTCATCCTCTTGCTCGTACGGCACCTCGCGCGGGTGCAGGGACGGCCGGTGGACGAGGTGTGGCAGGAGCTCGCGCTGATCTACGCCGAGGATTGGCCCGAGGACGATGCG # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8073-5962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZZ010000031.1 Nonomuraea sp. NEAU-A123 Scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 8072 24 100.0 39 ........................ GCGAGCGCGACGAGTTCCCGGTCGATGACGTCCAGCCAC 8009 24 100.0 43 ........................ GAGGGGCGGGGAGGGAGCCCCGGGAGATGGCCTCCCGGGCCAC 7942 24 100.0 40 ........................ TGGACCTGCCGTCCAACCCCAGCACCATGGTCCAGGCCAC 7878 24 100.0 41 ........................ GCCGTCCGGGCTGCTCGCAGGAGAGCGACTGATCATGCCAC 7813 24 100.0 40 ........................ CCGATGAGGTGGGCCAGGAGGCCAATACGCTCCTCGCCAC 7749 24 100.0 42 ........................ CTGCTCCTGGCCGCGATGATCCGCCGCGCGCCCGGCGGCCAC 7683 24 100.0 42 ........................ AGGATCCGCACCTGCTCCTCAGCGATCCCCATGTCATGCCAC 7617 24 100.0 41 ........................ GCAAGGGCGCACGATCCCGCCAGGGCCGCCTGCACTGCCAC 7552 24 100.0 42 ........................ GCCCGCCATTCCCGCCAGGATATGAATACGGATCTGGGCCAC 7486 24 100.0 41 ........................ CGACCAGGCCGGGGGCGATCAACGCCCGGAAGATGAGCCAC 7421 24 100.0 40 ........................ AGATGGCCGGTGTGTGCCCGTCCTGCCAGGAGCCGGCCAC 7357 24 100.0 41 ........................ TCGACTGCGGTGGCGGTGGCGTACGTTTTGGTTTCCGCCAC 7292 24 100.0 39 ........................ CGGAGCCTGGCGCATCCCATGCCCCGGTGCGGAGGCCAC 7229 24 100.0 40 ........................ CGGTCCAGGGGCGTACGGCGCACCGGCTGCGGATGGCCAC 7165 24 100.0 40 ........................ GTCACTTCGCTCCTCGCCGTGGATTGGGTGCCGCCGCCAC 7101 24 100.0 42 ........................ GCGAGGACATCCCGCTGGAGGGCTAACACCGGATGGGGCCAC 7035 24 100.0 40 ........................ TACATGCTGAGCGTGCTGTCGTCGGCGGTGATCCGGCCAC 6971 24 100.0 40 ........................ GTGACGTGGTCGCGGATTGCAAGGTTGCCCTGCCGGCCAC 6907 24 100.0 41 ........................ TTGACGTTCCGTCGCCCCGCCCGCCGACCGAAGGGCGTCGT 6842 24 100.0 40 ........................ TGGCCGCCCGCGGGGCTTGGATGCGGGCCTAAGGGGTCGT C [6833] 6777 24 100.0 44 ........................ GCCGCGAGCACCACCGACCCGGCCACGGTGCCCACCCGGGTCGT C [6768] 6708 24 100.0 42 ........................ GTCGGGTGAGGCTTGCGGAACCAGCGGACGCGGTCGGGTCGG C [6699] 6641 24 100.0 39 ........................ TGGTAATCGTTGTCGCCGGACGTGAGCATCTCGGGTCGT T [6635] 6577 24 95.8 42 ......T................. AGCCACGGTGTGTCGCAGCGGGAGCAGTGCAGGATGAGTCGT T [6570] 6510 24 91.7 41 ...........C.......C.... ATGATTCTCAACCGGTGGGGTGGCCACCTCGACCGCGTCGT C [6501] 6444 24 95.8 40 ...G.................... GCCCTGATGAAGGAAGACGATCAGGCAGCCGCCAAGTCGT C [6438] 6379 24 100.0 43 ........................ TGGCTGGTCCATCCGGCAAGCGCGGCGAGGTCGGCGGTGTCGT C [6373] 6311 24 100.0 43 ........................ CACGCTGCTCGGCAACGCGATCGCCTTCTACTCGGGCGGTCGT T [6303] 6243 24 100.0 41 ........................ AATTCCTTGCACACGCGATGGATGGCGACCCACATAGCCAC C [6237] 6177 24 100.0 37 ........................ GATGGCTTGAGCTCGGTCAGGACCAGCACGTGGCCAC 6116 24 100.0 42 ........................ GCGATCGCGAGAATCTCGCCCTCGAACGGGGCGCACGGCCAC 6050 24 100.0 41 ........................ TGGACCGGGATCATCTCGTCAGCCCTCTTCTCGGGGGCCAC 5985 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 33 24 99.5 41 TCATCACCCTGGAGGGATCGCAAC # Left flank : CTGCATGGCCAAGTGCGGCTCTCATTGGTAGCTACGAACTCTTGATGTCTCAGGTCCGTCGGTTCTCAGCCGGGTCGAAGCGCATGGCAGACGCCGTGGAAGACCTGCCGACTGCGGGATCAGATGCTCATGAACCTGGAGGCGAAGCCTTGAGCGATCTATCTGCTCGCGGAATAGGTCGTCGTGACATCGAGGCCCTGGGTCTTCACCGCTCTGCCTGGCGATGGGCGCAGGAGAACCGGCGCCCGGACGGAGGACTACCATCCGGAAAGGACATCGCTACGCAGTTCTCCCGTAGTCCTCGTTGGGGGCGGTGGATCAAGAATGCGGGGTTGGCGGGTGATCTAGGATGATTTCGCGACCCTGTCCTGGACCGCGTCCCAAGGAGCGGTGTTTACCAGCCTGACCTGTGCCTCAGCATTACCGCCGGGTTGCTGCAAAATGGCATTATCTATGCTCTGCTGTGCAAGCTTTGACCTGGGACTTTACCGTGGGGCCAC # Right flank : CAATCCAGGCGCCCGCACGGCATCGGAGTACCCCTGCGACTCATCGAGACGCGAACACCGTCGATGAGCTCGAGGTCCAGGAAGCCCCCCCACCAGGACGCAGTACAGACCCCGCTGAGCAGGTCCGCAGTCCGTCCACCGGGATTTCTCGTGGCCGCCTACCTGGAGTCGTGTGGCCATCCACCTGGCACGTTGGGTCCGCTGACCAAGAGTTCCTGATGCCCGCTTACAACGACACGCTTGGATGAGACATCACAGTCGGCAGTCGCCCATCACTCACAGTGAGGTGCGATCCGTCCAAGAGCTGGCTCAACGGTAGAACATGTCAAGTCTGAGCACGGTCTCCGTGGGTGCTACGTGCCGACCCCGCCCCCGGCATGGAGTCTTGCGATAGCTCAGAAATTGTCAGAGCTTCCTGCTACTACTGGGCCAAGTCCAAATGGCTTAAGGGGAGGAGCTCGTGCGGTTTCGCGTTGATGTTGCTGCCAGTAAGCCGGTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 45081-42672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZZ010000031.1 Nonomuraea sp. NEAU-A123 Scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45080 29 96.6 32 .......................A..... GGAGAGCCCGAGAGCGTCCGGGACCTGTATGA 45019 29 96.6 32 .......................A..... GTTGGTTCCGCTTCTGGTCCAGAGAGGCGAAC 44958 29 93.1 32 .......................A....G CGGAACGGTCCGGTCTTCGCGCTGATGCTGGT 44897 29 93.1 32 .......................A....G CTCAACAAGATCCCCAGCCGGACGGCCGCGCT 44836 29 93.1 32 .......................A....T TCATCACCACCCACACCGGCCGGCTGCCCAAC 44775 29 96.6 32 .......................A..... GGCAGCGGTCGGGGGCGTGAGACGCCAGTCAA 44714 29 96.6 32 .......................A..... CGGACATGCTCCTGGAAACCGTGGTGATGTTC 44653 29 93.1 32 .......................A....G AGCAGATCGGCACCCTCACCAGCGGCCTCGAC 44592 29 93.1 32 .......................A....T CGGTCACCTCCGCGAGAACCCCGACATCGTTC 44531 29 93.1 32 .......................A....G ATGAGCCTCGCCCGGCACGGTTCCGACACCGA 44470 29 96.6 32 ............................G AGCGCTGTCCTACTGTCCGCCCTGTGTGTGGC 44409 29 100.0 32 ............................. GGAGGGTGTAGTCCCGTGCTCATGGTCGTGAA 44348 29 100.0 32 ............................. CACGGCGCGGCGTTCTTCGACACCCCGTCCAT 44287 29 96.6 32 ............................G ACGCGAACCCGCGTGCGCGGCGCTGTAGTCGA 44226 29 96.6 32 ............................G CAGGTGCTCGACATGGGGCCCGAGCAGGGCAC 44165 29 100.0 32 ............................. CGGCCGGGCCCCTGGCCTGGCTCCTGCCACTC 44104 29 96.6 32 ............................T GTGTCGGTCCAGGCCGACCGACACATTCCGAC 44043 29 96.6 32 ............................A CGGACATACGGCACGCAATGCGGACATGGGAG 43982 29 96.6 32 ............G................ ACGTAGCTTCCCGTACCTGGCTCCGTCTCCAC 43921 29 96.6 32 ............................G TCCCCCTCGGCCTACGGCCGACCCTTCGGGCA 43860 29 100.0 32 ............................. CGATTCCGAGCGAGTCGCGCATGGAGCAGATT 43799 29 93.1 32 ........T...................G CCCGGCCGTGACGCGTTCCTGGCCCGCTTCGA 43738 29 100.0 32 ............................. CGACGTCAGGGCAGCCAGGTCGTCCAGCACGC 43677 29 100.0 32 ............................. GCGGTCATCCGTGACGAGCCTGACAAGGTGCT 43616 29 100.0 31 ............................. GGGTTCCCGACTCCGTGCGGGGGCTGAAGGT 43556 29 96.6 32 ............................G CCCAGCGTGTGGACGTGCCGCCCCAGCCGCAG 43495 29 96.6 32 ............................G CGGGGCAGCAGCGTGCCGTCGACGAAGCGGAC 43434 29 96.6 32 ............................G CTCGGCCACACCGACCCCCGGTTCGACGGTGA G [43425] 43372 29 100.0 32 ............................. GGGATCCAACCCCTCACACACCGGCCGACGGC 43311 29 93.1 32 ........T...................G CCGAGCGGCGGCATCTGGCATGCTTCCAGCGC 43250 29 93.1 31 ............G...............G CGCTGCAGATCGGCCTGTACGGCGCGGTCGG T [43224] 43189 29 96.6 32 ............T................ AGCGACGCCCGCTTGCCGGTGCCGCGCGTGTC 43128 29 89.7 32 .....T..G....A............... GTGCCCATCCCGTACAGATGGTTGACCACGTA 43067 29 93.1 32 .............A..............G GAGATCCGTCCGGGGGTTCTAGGTAGCCGGAA 43006 29 93.1 32 .............A..............G GCACGTTCGTCCCGCCTCCGCCCGAAGACCCC T [42980] 42944 29 89.7 32 .G..C........A............... ACGTCTTTGGTCGGCTCCTGGATCGCCCCGAG 42883 29 89.7 32 ......G......C..............G ATTTCCGGGCAGGTTTCGCGAGGGCCCTTACG 42822 29 93.1 32 .............C..............G GACGGCAGCCCGGACGCCTTCACGGGCACCGC 42761 29 86.2 32 ....A........CT.........A.... AGATGTTCCGCCTGGGAATAGACCCACCCGCC 42700 29 86.2 0 ...A..................CC.C... | ========== ====== ====== ====== ============================= ================================ ================== 40 29 95.2 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : GACATCCCAGAGATCGAAGTCAACCAACTCTGGGACGAGAAAGTCGGCACCGTCGCCGGAGGCGTCAACTGGGCAGGAACAGAAGAATTCCCTGACGACCCCCTCTATGCAGAATTCAACCAAGCCGCCATGGGCGAAGAACACATCGCCGTCATCGGCCCCGAATTCGACGACCGACCCCACAGCAACGAGGCGGCCGACACATGACCGTCATCGTCCTCGTCGCTGCCCCCGAAGGACTCCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCCGGCGTCTTCGTCGGCAACCCCAGCAAACGCATCCGCGACCGCATCTGGGAACTCCTCGCCACCCGCATCGGCGATGGCCAAGCCATCCTCGTCGAACCAGCCACCAACGAACAAGGCTGGGCCACCCGCACCGCCGGCAAAGACCGCTGCTACCCCATCGACTTCGACGGACTAATCCTCTCCGCCCGAAACCGCCGATAAAACCCCAGCTCAGCAAGT # Right flank : TGGGCTCTGGCGACTACCGGTCAGGCTCGCGTTGCGATGCTGAAACTGCCCTGCGTCATGCCGAGCGATTCAAGCGTTTCTATCAGCAATCAGCGATGAGAAGGGTCTGAACACCAGCATCACCGAAGTATCAAGCTAAGCGAAAACGCAGATCTCAATCGATTGTTATGTATTAACTAGTATGCAAGACTATCTGTCAAAGATGATGTCAATATCACTGAAAAAGGACGATGGTATCTGCGATACGTCTGGGGCTGCGCCTGCCGCCAGCGGTCCCACTGCCGTCGCTGCTGCCGGTGTCCGAAACGGGGTATCGCATGGCATGGGTCAACGTGTTGGGCCCCTGCATGGAGCAGGTGGAATACCGATTACAGGAGGGCGCTGGCTGCGGCGTGCCCCACGCTGGCGAGCACGGCCACGAACACCATGAGGAGCCTGATGGGCAGCTGAGCTACCGGCTGGGCGGCGAGAGCGCCCTGGTGTGGATCGGTGAGGGCCTG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATAGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54865-59126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZZ010000031.1 Nonomuraea sp. NEAU-A123 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 54865 29 100.0 32 ............................. CTGCTCCAGTTCGTGACGATCCTGATCGCGCT 54926 29 96.6 32 ............................T TTGAGGGCAAACCGATCCCCCTCATCGAGCAG 54987 29 96.6 32 ............................C TTGGTCTTCGGCTCGCACGACAGAAAGGCGAC 55048 29 100.0 32 ............................. CTCGCCGAGCGGGTCGGCATCAGCAAGGCCAG 55109 29 96.6 32 ............................C CTTGCCGCCGTTGGACCGCGGCCAGCTCGCCG 55170 29 100.0 32 ............................. GCGGTCAACTACTTCGTTCAGGGGAGCGCATA 55231 29 100.0 32 ............................. CTCCGGAGGAGTAGATGAAGCCCACGAAGATC 55292 29 96.6 32 ............................C CCGCACGCCGACCCGGCGATGCGCGAGCTGAC 55353 29 96.6 32 ............................T CCAAGAGGGTGGCCGCGATCGCCGCTGGCGCC 55414 29 96.6 32 ............................C CTGGAGAAGCAGGCCCGCCAGCAGGCGGCGGC 55475 29 100.0 32 ............................. CCGGAGGACGCCCCGACGTGGACTTCCAGGTG 55536 29 100.0 32 ............................. GTGATCGCGCATATCGCCGACCCCGACGACCG 55597 29 100.0 32 ............................. CCTGGCTCCACGTGACCGCCTTCACTGGCACC 55658 29 96.6 32 ............................C ACGAACACGAACGCCGCGTCCTGCCCGGCAAG 55719 29 96.6 32 ............................C CCGCCACGTTCGGCCCCGGAACCGCGCGAAAC 55780 29 96.6 32 ............................C GTGGCGGACGGAGTCTCCCAGGGAGCCCTGGA 55841 29 100.0 32 ............................. ATCGAGATCGCCGCCAGTGACGAGCCGGTCAA 55902 29 96.6 32 ............................C CGCCGACCGCAGTGTTCCGGACCGTCCCCTCC 55963 29 100.0 32 ............................. GTTCAGCCCGACTCGGATGAGGGCGAGCTGGT 56024 29 100.0 32 ............................. ACGGCGCTGGTGGCCGGCGTGAGTACGGGACT 56085 29 100.0 32 ............................. GCCACCCCGTCGAACGTGGCAGCCTGGTTGAC 56146 29 96.6 32 ............................C GCCGTGCTCGGCACGAGCGGCGCGCTGCTGGG 56207 29 93.1 32 ...................A........T GCGTGACCCGATGACGCGCGGAATGCGGTCAC 56268 29 96.6 9 ............................C GGGACCATC Deletion [56306] 56306 29 100.0 30 ............................. TTCTCCTGGCAGGAGCGCGCCGTGGTGATT 56365 29 100.0 32 ............................. CTGCCGATGCTCGGCCGGATGGTCGCCCGGGA 56426 29 100.0 32 ............................. GAGCGGGCCGACCTGTCGAGCCGTAGCGGGCA 56487 29 96.6 32 ............................T CAGGCCCTGCGCCAGCGGGCCTGGTCGCCGCC 56548 29 86.2 31 ...........A.G..T...........T CTCATCAGTTTGCACCCGCGGTGTGTGACGG 56608 29 93.1 32 ...........A.G............... GCGATCAGCCGCCCGCACAAGCCCGTCACCGT 56669 29 89.7 32 ...........A.G..............C AGCCTGGTTCCGGACCGGATCTTTCTGGCGCC 56730 29 93.1 32 .................A..........C CACTCAGGGGAGTGTGGCTGCCATTGGATGGC 56791 29 93.1 32 ......................C.....T CCGAGGTACGTCTTGCCGTTCTGGGTGGGGGC 56852 29 93.1 32 ......................A.....C ATGCGGGCCGCCGACCGCATCGAACGCAACGG 56913 29 96.6 32 ............................T GCGACGATGATGAACAGTATCGCCCATTTGTC 56974 29 100.0 32 ............................. GACGCCCAGGACGACGTCAAGTCCGCCCAGAA 57035 29 93.1 32 ...........A.G............... TCGCTGCTGCAGCAGGTGATCGAGGCCGGTCC C [57040] 57097 29 93.1 32 ...........A................C TCGTTCACCGAGCCACGCAGATTGCCGACTTG 57158 29 86.2 32 ...........A.G..A...........T AGGCGCTCCCGTCGATGGGGTGCGCCCGCTTC 57219 29 93.1 32 ...........A.G............... GTGTCGTTCTCGTAGACGGTCTGGGTGTCCAA 57280 29 89.7 32 .....................G..A..G. TACCTGCGAGTAGCCATTTCGTGTGGTTCGAT 57341 29 96.6 32 ............................T TCCAGGCGAACAGCGGCTCGGAGAGCCGCATG GC [57354] 57404 29 93.1 32 .........................A..C ACGGGCTACGGGTGCGTGCCCAACCTGGACGC 57465 29 93.1 32 ........T...................T CGGATCTTCCCGCCGTAGGCGAGGCGCAGGTG 57526 29 89.7 32 .....T.....A................C CGCCCCAGCCAGGACCGCACCCCCAGGGGGAC 57587 29 96.6 32 ............................T CGGCCCGCAGCCTGCTCCACCGTGAACCCCTG 57648 29 96.6 32 ............................C CACTGGGCCCGCGCGATCGAGTCCCACGCCAC 57709 29 96.6 32 ............................C GAGGTGTAGTTGTTGGAGGAGCCGATCGCGCA 57770 29 96.6 32 ............................C CTCTGGCCTGTCCAGCTTCAAGCCATCTTTGA 57831 29 96.6 32 ............................C AGGCAGACGTCACAGCGTCCCCTTGAACCGCT 57892 29 100.0 32 ............................. CATCAGCGTCGCGACATGGAGCTCGGCATGGT 57953 29 100.0 32 ............................. ACGGGGATGCGAGGCTGGGGTGCGGGAGGCAG 58014 29 93.1 33 .......................A....C GCCGCTCCCGCCGATCGTGGACCTGAGGACCGC 58076 29 89.7 32 ........T........A..........C GTCAGTGCATCTTGCCCTTGCCCAGCGTGCAA 58137 29 100.0 32 ............................. ACGATGTAGACCGCGGGCAGCTCGGGCGAGAA 58198 29 93.1 32 ................T...........C CGGATGCGGTTGCTGATCTCGGACCAGTCGGC 58259 29 96.6 32 ............................T GATCATCTCGTTTCAGGCACGAAAAAATGTGC 58320 29 96.6 32 ............................C TCGGGCTCACTCTGCCCCGGCCGTGCTGGTAC 58381 29 93.1 32 .G..........................C ACCTGTCGGTGCCCGGTGACTCGTATTTCGTC 58442 29 93.1 32 ......................A.....C ATGCTGACGTTCTGCCTGGCTCTACTTTCCGA 58503 29 100.0 32 ............................. TTCGGCGCGACCCCCGAGGACCGCGCCCGTTT 58564 29 93.1 32 ......................A.....T GCGACTCCTGTGCGTGAGATGACGCTCATGAG 58625 29 86.2 32 .............C...T......A...C CTCTATCCCGGGTCGAACCCGCTGCTCGACCT 58686 29 86.2 32 ...AA..T....................C ATGCGCGTCGTACGGTCGGTGGTGACAGCGCG 58747 29 100.0 32 ............................. GCGTGCCTCACGCGCAGCTCGGCCCCGCTGCC 58808 29 100.0 77 ............................. ATGTCTGTAGCGCCCATATCAGCCCACCGCCTGTCGGATGGTCCTTGATCCTCGAAGGGCTCGACGTCGGCGGAGCA 58914 29 96.6 32 ............................C TGGAGGACGGCGGCACCACTCTCGCCGTTCAG 58975 29 96.6 32 ............................C CTGCTGGCCGGTAGTCGGATGGCGCTGTGTGA 59036 29 96.6 32 ............................C TGGTCAAGGGTGCAGTACGCCTCGTGGTAGCG 59097 29 86.2 0 A.........A.......AA......... | G [59122] ========== ====== ====== ====== ============================= ============================================================================= ================== 70 29 95.7 32 GTCGGCCCCGCGCTCGCGGGGATGGTCCG # Left flank : TCCGCGCCTTCGGCATCTACCCGCTGAAACGCGGGCGTCGCCTTTCCGCAGTCGTGCACCCCGCACAGCCAGGCGAAAAACGATCTCCCCCGACCGTTCGAAATGTCATTCAATGTCTGCTTGGCCGAGGGCGGCAAATAGTTATCCCAGATCTGCTCCGCCACAGCCGCAGTGTCCAATAAATGCGAAAGCAGGAGATTTGTCCTACCGCCTGCTTTCTGGCGGGATTTACCCCACAGAGCCCCAAGCTGCCGCATTAGCACAGAGTCGTAACCAAACTCGTCATGCCACTGCATCGCGCCCTCCCATCAACTGGCCACGCTAAACACTGCCACCGACAAAACAGGACCGTGATCCACACCTGCGGTATCGTTCACCCACTTCACCGCGTTAGCAGGAAGAGCGACCCGAATAGGCCACAGAGCAGAAGATGCAGCACCCCTCGCTAGCAACTAAAGGAAAACAGCACGCCCCGCCAACGAAACCGCAGGTGAACAAGT # Right flank : GCGATCTGCACATTGCCGCTCTATGACCTCTGAAGATCATTGGCGGTGTCGGCGAATGCTGGACCGGAGTCCGCCGGAAGTCCGCCCACAACCATGGCGATGGCCTCTTCCGCCGTGTCGGCTTCGCCGATGACGATCCCGCGCGAGGGCCCGCAGACCCGGTATCGGCCGTCTCCCATTGGATCAACGAACGGCGCATCCCACGAGAACGGATAGCCGGTACAGGTGGTGAAGTGAAGGGACCAGTGGCTCGTGAACGGATACAGCTGGCGAAGCTTCGGTTCAGCGTATGCGGCCTCGACCAAGGGGAGCACTCCTTGAATCGGGCTTTCCTGGACGCTCTCACGAAGCAGGCGCCACTTTACGGTGACCGCATCGGCGGGACCGCGCTCATGGGCTTTGGCCAGTTCGCTGACCTGGATGAAAGGGGCCTCTCGCTGGATCTCGCAGAGTCTTGCGCCATTGCGCCACGCGTCCGTTCCGCGGGCTATCTCCGCCAG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //