Array 1 893-624 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZOR01000007.1 Actinomadura meyerae strain DSM 44715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 892 28 100.0 33 ............................ CTCAGACCGTTACCACGGTAACGGTCGACGGCC 831 28 100.0 33 ............................ GAAACCATGGTTTCAGCCGGGCTCCCCGCCCCT 770 28 100.0 33 ............................ CCATTTTCGCGGCGTCGCGAACATGGTCCAGGG 709 28 92.9 30 ...................T.......G GGTCGTTAATACCGACACCCCTGGGGGGTC 651 28 78.6 0 .........C.....G.....A..C.CC | ========== ====== ====== ====== ============================ ================================= ================== 5 28 94.3 32 GTCCGGCCCGTGCGCACGGGGGCGGGGA # Left flank : CCTCCTGCCATGGGCAACAAGCCTACCGACCCCACCCCCGGCGCCTACCCCGGCGGTGAGCCCGCCACGGTGCGCGCGGCGGCGGAGGTGGCGATCTCGGCCGAGACCGTCGAGCGGGACCTCACGCGGACGATCAACCGCCTGCAGGACGCCATCGACTCCCACGACCCCAGGGCGCTGCGCGAGGCGCTGCGGACCGCCGAGCCGTGCATCAAGCGCGTGCGCGCGTGGCTGGACGAGCGGGAGGAGGCGTGAGCGCGGCGGCGGCCGCCCCGGACGTGCGGGAGCTGGCCGCGCGCCTGGAGGACGCCGAGCGGCGCATCGAGCGCCTGTCGGAGGTGATCGCCGACCTGCTCGGCGAGACGCTCCCAGAGCCCCGGCGCCAGCGCCCGCACCTGCGCGCCGTCGACTGACCTCCCGCGGGGAGGGCTGTGGAGCGCCCCGGACTGCTGCCCCCACGGCGGCGGCCGGGGCGCTCTCGTGTCCGCAGGCCGGCGAGG # Right flank : GGGCACTGCCCGGTCCGTCCCAGGTGCCAGGCCCGGTGCCTCGGTTTCCGTCAGGGAGCGTGACGGAAAGCCCGCGGGGACGTCCACGGCCATGGACACCCCGGCCGGGCGGGGAGGTGTCCACTGGACACCCCCGACCTGCGTATGGGCCAACCCAACTCAGGCCGCCGGGTCACCCCTGCTCGTCGCCGACGGACTCGGCGACGTATGAGCCCTTGCCGCGCGTGGTGACGATGACCCCCTCCTCGCGCAGAGCGGCGATGGCCTTCCGGATCGTCCCGCGAGCGAGGGCGTACTGAGCTTCGAGCGCGGTCTCAGAGGGGATCGGGTCGCCGGGTGCCAGCTCCCCGGACTCGATGCGCGCGGCGATGCGGTCGGCCAGTTGCCGCCACTTCGGGACGGGCCCGTCCTTGATCTCCTCCATGATCAAGACCATATGTGACCAGGGATAACGCTACATAGACACGCTCGTCCATGGACGGGCATGTACAAGTGGACGT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGCCCGTGCGCACGGGGGCGGGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 20551-19553 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZOR01000059.1 Actinomadura meyerae strain DSM 44715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================== ================== 20550 29 70.0 31 .C...A....C.T.T.TT..-........A TGAGCGCGCCGACCGTGAGGCCGACGCCGAA 20490 30 76.7 146 ..........C...A....CC....GG..A CTCTGCAGAAGATGCTTCGAGTGCGCGCTCAGGCGAGCACCTTCGAAGGTGAAGTCCATGATCGCCGCAAGGAGTCCGATTTGTCCGTATCAGCAGAAGTGCTCTCAATTGGCCCCGCTGCCGCCTAGAATCCCAGGTCAGGCAGG AC [20467] 20312 30 96.7 31 .............................A GTATGTTCGCCTCGAACTGGATCGACGCCGG 20251 30 100.0 31 .............................. ACGCGCGCAGGGGTAGTCGTGATCATGCTCA 20190 30 100.0 31 .............................. GTGGCACCCGGTGGTCCGGATCAAGCAGCGC 20129 30 96.7 31 .............................G CCCTGTCCAACCCCTCCCGGTACGTGTGCCA 20068 30 96.7 31 .............................G CCACGAGCTGCCCCGGCTCGGTGCTGCGGGC 20007 30 100.0 31 .............................. GCCGGCGGAGGTCCAAGAACCAGCAGCGTGA 19946 30 96.7 31 .............................T ACACGACCGACGGGAAGCCGGCACCGGCCGG 19885 30 100.0 32 .............................. CGGACGGAAAGATGTTCCGCACGTCCCGATGA 19823 30 96.7 31 .............................A GGGTCGGGCGCACGTGCGGGGCCATGGTGAA 19762 30 93.3 31 ..........C..................T ACGTCAAGTTGATCAACATGCTTGTCCAGCA 19701 30 93.3 89 ..........C..........G........ AACTCGGCAGCTTCGCCTCCGTGCGGGGAAGGTGCTCCCCGCGCCTGGGGGTGGTCCGACCGTGCTTCGAGGTGGGGCGGCCGGGATCA 19582 30 76.7 0 ...T......C.T.............GGAA | ========== ====== ====== ====== ============================== ================================================================================================================================================== ================== 14 30 92.4 44 GTGCTCCCCGTGCACGCGGGGATGGTCCCC # Left flank : CGGCGACAGTTCCACCAGTGTGTGGCGTTGAGGTGAGTTGGCATGAACATCAGTCCGTGCCTGGCGGACCGATCTGTGAGTTGGCCCATGCGAAGGCGGCGCCCGCCGCCCCGGCGCCGACAAGTAGGGACTGCGGATGAGAGAGCGTGGACAGGTAGGTCAGACCGCCGGCAGCGCTTCCTGCCAGAGCGGCGAACAGTAAGAGTACGAACGTGTGGAGGTCGAGAGGGGGGGCGACTGGGACTGCTCATGTAACTCCTCATCCATGAAGGGACCAAACGCTTAATCCTGCTGTGTTCAGTGGATGGGCAAGAGGGTAGCGTGTCGGTCGTTTGGTCGCCACCGCACCTGCCGATGGATTGCATCCGTGATGCTGGCTTCCCTGGTCGGCAGGGCCGGGTGGCCGCGTAATACAACAAGCCGGAGTCTGGTTGGTCCGAGTCTCTATGAATGCACCGAGATGGCTCTTGCGTTACTCAAACTGCCAGGTCAGAAGGTGC # Right flank : GGTGCGTAACGTGTGTTCTGATCCCAATCATGCCGTCGCGATGGGAGACCTCTGGCATGGCGGGCGGCCAGGTCTGGTGGGAGCGCGATGCCGCATTCGGAATGGACGAGGACGGTCACCCTTCAGGGGCCTCAGCACTGACCCTTCGCATCCTCTTTTCGCTGGCCGGAGTCGATACACGCAGGGCCAAGGAGATAAAGCAGCCTGACCGCGAGGCCGCGCGTCACGGTGACCGCGGTTAGGTCACGGCGGTGACCGGCTGGCCGTCCGCGATGACGTGGTTCGTCGCGCAGCGCCAGTGGGCCAGGGGCTCGCCCTTCGGCGTGGTGATTGTGTCCGCGAGAAGCGACAACGTTTGTGCGCCAGGGGGAGCGACGGTTGAGGGTCTGCTGGATGCGGTGATGTCGATGAGATTCAGTAACGGTGTCGCGGGAAGGTGAGTCGACCTGGGGCGTGGGTGGAGGGTTGATGCCGAGGGGCCGACAGGCTTTGCAGCCCGA # Questionable array : NO Score: 4.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-1.15, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30455-31082 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZOR01000059.1 Actinomadura meyerae strain DSM 44715, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 30455 30 100.0 31 .............................. ACGTGGCCGTCAAAATTCAACGTGGCGACCT 30516 30 96.7 31 .............................G TCACGGTCCTGGACCACCAGCCGCCGGACCA 30577 30 96.7 31 .............................G CTTCCAGCGCCTCGCCGCCGGGGCGGGGCTG 30638 30 96.7 31 .............................G GCACGACCGCGTACGCGGGCACGGCGGTCCG 30699 30 100.0 31 .............................. GCCACCACCCGTCGAACCCGTCCAGCAATTC 30760 30 90.0 32 ...............C........A....T CGCAGAGCTGGTCGGCGTCCCGCGGGTAGCGG 30822 30 96.7 31 ....................A......... CGGTCCGGTACGTCCCCGTGACGGCGCAGGC 30883 30 96.7 31 .............................A GTCGTCCGCGAGTTGCCGGACCGGCGCCGCA 30944 30 100.0 79 .............................. CGGAGGCCCCTGGTTCAAATCCAGGCGTCCTGTGCGGGGATGGTCCCGCCGAGGTCCGCGCGGCGCGGGAGGAAGGTCG 31053 30 96.7 0 ..................A........... | ========== ====== ====== ====== ============================== =============================================================================== ================== 10 30 97.0 37 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CCAGGTCACACTGCAAAGCGACCATGGCATGAACATCGAATCCGGACGCAACTACGCCGAAGACGTGCACTGGTGACCATCATCGTCCTCACGAACTGCCCCGCCGGCCTGCGCGGCTTCCTCACCCGCTGGATGATGGAGATCTCACCCGGCGTCTTCATCGGCGGCCCGTCCGCCCGGATCAGGCAAGCCCTCTGGGACGAAGTGCACCAGTACGCCGACACCGGCCGCGCGCTGCTCGCTTACACGACGAACAACGAGCAGGGCTTCACCTTCGAAACCCGCGACCACAAATGGCAACCCATCGATCACGACGGACTCACACTGATCCGCCGCCCCAAGGCGAAGCCGGTCGTCTCCTCGAAGCCCCCAGCAGCCGGCTGGAGCAAAGCCTCCAAACGCCGCCGCTACGGCAAACGCTGACCGACGCCCGAAATGTCGGAATCTCACAAAGTGCTTCCAACAGCGCCGCCGGCCGATAAACCCGCAGGTCAGCCAGA # Right flank : CGGGATCCCGTGCGCGTCACAACCCGGGACGGTGCTGTCGGCGGCAAGTGAAAACTGACCCCCAGGCGAGACCAGGTCAAACTCACACACCACCTCCGTGGACACAACCCACAGACCCACCCGTAGGGACCACTCCTGACGGAAAACACATCCGCAACTCGCATGAGCTCGCCGCGTTCTGCGGATCATCCCCGCGTGCGCAGGGATCACAGCGACCGGTCCCACAGGGCACGCTCCTCGGGGGACCATCCCCGCGTGCGCGGGGAGCACCTCATGCACGCCTGGCAGTGCCGGTGTGACGAGGGACCATCCCCGCGTGCGCGGGGAGCACTACGGTCGATCACGTCCCCCGACGCACGGGAGGGGACCATCCCCGCGTGCGCGGGGAGCACACTCGCTGACCTGGGAGTTTAGACAGCGGGAAGGCGAATTTGGAGCACTTTTGCAGGTTCGGACAAATCAGACATCGGGCAAAGGCGGCGGCCGCGCTTCCCTCCTAG # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 31474-31262 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZOR01000059.1 Actinomadura meyerae strain DSM 44715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 31473 30 100.0 31 .............................. TCCCGTGCGTCGGGGGACGTGATCGACCGTA 31412 30 96.7 31 .............................T CGTCACACCGGCACTGCCAGGCGTGCATGAG 31351 30 100.0 30 .............................. CGAGGAGCGTGCCCTGTGGGACCGGTCGCT 31291 30 86.7 0 ...A....T...............A...G. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CATCCAGGCCCCCTCGACGCTGCGGAGGCCTGGCGTCGCGCTCGCCTCTACTTCTCGCGCCAGCATGAAGACCCGATCCTGGTCCACATTGAGGAGTTCGATCACGGCTACCAAGCGATGCCAATCGTGCTATCCCTGCCCGAGTTGCCATCCAGCCCCACCATCGAGACTCCGACAACCCTTGTCTTTGACAAGACCACCGGGGCTGCAACCCTCTGGCCACTGCTTCGCCTTGACGTCCTAGCCAGTCACTACCGAAGCTACAAGCGCCAAGCACCCATAACCTGCGAAAGCCAGTCCTGATGACGGACCTTGCGCGCTCTCGCACACCTCCTCGCGGGCGACTACCCGTAGGCGCGAGCCCGGGACGAGTTTCGACGGCTCGGCACGGACTAGGAGGGAAGCGCGGCCGCCGCCTTTGCCCGATGTCTGATTTGTCCGAACCTGCAAAAGTGCTCCAAATTCGCCTTCCCGCTGTCTAAACTCCCAGGTCAGCGAGT # Right flank : AGAACGCGGCGAGCTCATGCGAGTTGCGGATGTGTTTTCCGTCAGGAGTGGTCCCTACGGGTGGGTCTGTGGGTTGTGTCCACGGAGGTGGTGTGTGAGTTTGACCTGGTCTCGCCTGGGGGTCAGTTTTCACTTGCCGCCGACAGCACCGTCCCGGGTTGTGACGCGCACGGGATCCCGGGGACCATCCTCGCGTGCGCGGGGAGCACCGACCTTCCTCCCGCGCCGCGCGGACCTCGGCGGGACCATCCCCGCACAGGACGCCTGGATTTGAACCAGGGGCCTCCGGGGGACCATCCCCGCGTGCGCGGGGAGCACTGCGGCGCCGGTCCGGCAACTCGCGGACGACTGGGACCATCCCCGCGTGCGCGGGGAGCACGCCTGCGCCGTCACGGGGACGTACCGGACCGGGGGACCATTCCCGCGTGCGCGGGGAGCACCCGCTACCCGCGGGACGCCGACCAGCTCTGCGAGGGATCATCCCCGGGTGCGCGGGGAGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //