Array 1 250582-248111 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNK01000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N51274 N51274_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 250581 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 250520 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 250459 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 250398 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 250337 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 250276 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 250215 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 250154 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 250093 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 250032 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 249971 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 249910 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 249849 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 249788 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 249727 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 249666 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 249605 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 249544 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 249483 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 249422 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 249361 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 249300 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 249239 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 249178 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 249117 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 249056 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 248995 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 248933 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 248872 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 248811 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 248750 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 248689 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 248628 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 248567 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 248506 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 248445 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 248384 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 248323 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 248262 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 248201 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 248140 29 100.0 0 ............................. | A [248113] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 270064-267127 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNK01000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N51274 N51274_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 270063 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 270002 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 269941 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 269880 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 269819 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 269758 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 269697 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 269636 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 269575 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 269514 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 269453 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 269392 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 269331 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 269270 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 269209 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 269148 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 269087 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 269026 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 268965 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 268904 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 268801 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 268740 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 268679 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 268618 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 268557 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 268496 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 268435 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 268374 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 268313 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 268252 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 268191 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 268130 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 268069 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 268008 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 267947 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 267886 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 267825 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 267764 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 267703 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 267642 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 267581 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 267520 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 267459 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 267398 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 267337 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 267276 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 267215 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 267154 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 48 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //