Array 1 21235-21932 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGFVA010000019.1 Streptococcus suis strain M70 M70_scaffold19, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     21235	    36	  88.9	    30	A.....TC......T.....................	CCCTTACAGAAGCCAACACTAACACAGAAG	AC [21240]
     21303	    36	 100.0	    30	....................................	TTCATTTCCGCTTGTGGAAATTCACCTGTA	
     21369	    36	 100.0	    30	....................................	TCAAGAACAAGCCTACCGACTGTTTATTGA	
     21435	    36	 100.0	    30	....................................	TTCGTGACAGTGTCTATAATCAAATTCAAT	
     21501	    36	 100.0	    30	....................................	GTCTGTTAGCGATTGATAGAAGCGACTGAA	
     21567	    36	 100.0	    30	....................................	AATTAGATAAGGAAGAAACATTTTATAGAT	
     21633	    36	 100.0	    30	....................................	TTGACAACCCGATGTTTGAAGTCGTGGAGG	
     21699	    36	 100.0	    30	....................................	ACACTTCCAACCGACCAAAGCCGAAGTGTA	
     21765	    36	 100.0	    30	....................................	GTAGCCTTATTTAATTCTAATGTGTGCTAA	
     21831	    36	  97.2	    30	.........................A..........	GCTTACTTAGTTGATGGTTTACACTGGATT	
     21897	    36	  97.2	     0	.........................A..........	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.5	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	                              	       

# Left flank :   CGCAGGGTCAATAATGTGGCCATAGTTGAGGCTGTGGCTAGGAACAGTCGCCAAATCCTTTCCCTTGAAAACCTTGCTGGCAATAGCAAACGCATCCGTCCCAGACAGGCGGACAATCCCGATAGCCCCCTCACCGAGAGGAGTTGAAATGGCTGTTATTGTATCGAATTCTTTGGTGATCATAATAATGTGCTTTCTAACAAGAATCTGTATTCACAGGTTTTGTCGTAAATCAAGGCAGTTTTTGAGAGAAAACTGACTGTATTTTGAAAAAAACTAACGATGGCTAGCTGATAAACTAGCCTTAGATGGAAGTGCTGAACTGTGAATACAGGTTCTTAAATCTTACTTATAAGTTTAACATGGAATGATAAAAAAAGCACATTTTAGAGATGCTGATACAAAGATATGTATTGAAAACGATTTAAAATTTGATATAATAACAATAGAAACAAAAAAGCACCGAATCGGTGCGCAAAATTGAGTACGGACAAAGCCTT
# Right flank :  CGTATAGCTATTCAGATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTACCATCCCCCTTTTCCATGCTATACTATATGTAATCGTTTTATTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGATTACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAGGTGGTCGCAGTCAATAGCAAGGACTGCATCTGG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGCTGTTTCGAATAGTTTCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.80,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.41   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//