Array 1 136359-134162 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTTK01000006.1 Azospirillum sp. Sh1 NODE_6_length_255800, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 136358 32 100.0 34 ................................ CGCATGGAAGGGGCACAGTGCCTTGTGCTCGTGA 136292 32 100.0 34 ................................ TCGTTTTGCCGAGTGTATTTTTGGGGGCTTCGTC 136226 32 100.0 35 ................................ TCTTGCAAAAATGGTCGGCGATGGGGTCTTCTGTT 136159 32 100.0 34 ................................ CGCCCTATGACCGGCTGTATGCTGCCCGCCTCGC 136093 32 100.0 33 ................................ CGGCAGGCGCTGATCTGGCTGCGGATCGACGGC 136028 32 100.0 33 ................................ CTGCCAGCCCATGGTCTTACTCCGCAGCTTGTT 135963 32 100.0 35 ................................ TCTCCAATGGCAATGGGGCGGCTGACGAACCAGCA 135896 32 100.0 34 ................................ TTTCAAGAGGCGCCTCCCGGCCGGGGCCGCAAAT 135830 32 100.0 34 ................................ CATGTCCGCGAGCGGCACTTTGGCGGCGATGACC 135764 32 100.0 33 ................................ GCCCTGATGCTGGAGCGCGAAGGACCGTCGCTG 135699 32 100.0 34 ................................ CGTCGTCGGGACGCGGGTCCATGGCGGGGCGGGG 135633 32 100.0 34 ................................ GGGCTGGAGCTGAAGGCTCCGAAGGGGCGCGTGC 135567 32 100.0 34 ................................ CCGGCGGAAGCCAACGCCCGCCTGATCGCCGCTG 135501 32 100.0 35 ................................ TTGGCCTCCGTCAGCGCCTCATGCTTATCCAGCAG 135434 32 100.0 34 ................................ CGCAAGGAGAACGCCGGCCCCACCATCACGGCGG 135368 32 100.0 35 ................................ CCACGAAGGCCAAGCCCATGAAGCCTACGAGGCGC 135301 32 100.0 36 ................................ AACCTCCAACTGGCGCGCCCACGCGATCATTTCGTC 135233 32 100.0 34 ................................ TTGCGGAACAGGGCCGGTATCGTGGTGGTCTTGT 135167 32 100.0 35 ................................ AGCGCCGAGGTGAACAGGCTGTGGCCACCGGGACG 135100 32 100.0 36 ................................ ATCACCAAGCACGGCGGGAAGGATGCGCTGGCGGCA 135032 32 100.0 35 ................................ TGAGCCGACGGGGTGACGCCTTCGACCAGCGGCGT 134965 32 100.0 34 ................................ TGCTCGGCCGTCAGCCCGCCGTCGGGCGACGGGG 134899 32 100.0 32 ................................ CCCCTCCCGCCGCGTTCCGCCCCGCCGCGAGA 134835 32 100.0 34 ................................ TGCGGTGCGGACGGCGGTGCGCGTTGCAGTTACT 134769 32 100.0 34 ................................ TGGCTGGTGCTGACGCCAAGACGGCGTTCGAACA 134703 32 100.0 34 ................................ ACGCCGGGGAAGTCGACTCGGACCATCACATATT 134637 32 100.0 34 ................................ TTCGGCAGGGTGCCGAGGATGCGATCCGGCGGGC 134571 32 100.0 34 ................................ ACCGCAGTCTCCACCCGCACCATCCTGGGGGCCG 134505 32 100.0 36 ................................ TGACCCGGCCCAGACCACATCACGTCAAACCATGCG 134437 32 100.0 14 ................................ GCCGCCACCGCCTC Deletion [134392] 134391 32 75.0 32 .ATCTT.GG..A.................... ATGTTGGAGTCAAGCCACTGCCGGTGAGCGCT 134327 32 100.0 35 ................................ GTGCGCCACGTCGGCTCGAGCGGTGAAGGGGTCAA 134260 32 100.0 35 ................................ TCCCGGTTCCCGGAGGTCTTCCCCGGCGTCGCTTG 134193 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.3 34 GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Left flank : GGAAGTGAGCGGCGACCGTGCTCGTGCTGGTTTGCTATGACGTATCCACCGAAACTCCGGCAGGCCGGCGGCGCCTGCGCCGTGTGGCGAGGGCATGCCAGGACCATGGTGTGCGCGTTCAGTTCTCGGTGTTCGAATGCATGGTCGATCCGGCACAATGGACGGCACTCCGCGCGCGTCTGCTGGACCTGATCGATCCGAAGACCGACAGCCTTCGCTTCTATCTGCTGGGTTCGTCGGCACGGCACAAGGTGGAGCATGTCGGCAGCCGCCCGCCCACCGACCTGGACGAACCCCTGATATTGTGACTCGCCCGGCTGTTGCGCGAACCCCAAGCGACCACGAATCCCCTGGAAGGTTCGCGCGCTCGTCTATTCCTTGAAACCGGACGAACTTTTGCGGAGCCGGCCTGTGAACTCCGGTCGGCAGATGAGAATTTGCCCAAGGTTCGCGGAACCACACCTATTTTCGGCGACCGGCCAGCCGGTTATGCTGGAGCC # Right flank : ATGCCCTTCAGCAGGTCGAGCGCGGCCTGTTCACGGAGATTGGCCAATCTCCGCGTCGGCTTGCCGTTGCTTGTGTCATGCCTCGGGGCAGGCGAATACCAAGCACAGGCAAGATCGGTTCAACGGTCGTCCGCTTCATGACCCGGTGCCTGCGGGCGCCGAAGGGCCGGCCGGGGCCGTGGATCCCGGTCCGCCCAGCCCGGTCAGCAGATGTTCGATGAAGCTGCGCACCTTCGGCGAGACATGGCGGGTCGCCGGATAAACGGCATGGATGGCCTCGTCCGTCACCTCCAGGTCCGTCAGGACCGGGATCAGGCGGCCGGCGCGGATGTCGTCCTCCACGATGAAGTCGGCCAGCCGTGCCAGCCCCAGCCCGCCCACCGCGGCATGGCGCAGCAGCCAAAGGCTGTCGGTCTGGAAGCCGCCGGCCGGACGCAGGATTTCGCGCCGGTCGCCGACCAGGAACTCCCACTCCGTCCGGCCGGAGCCCGACAGCAGCG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 144635-146248 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTTK01000006.1 Azospirillum sp. Sh1 NODE_6_length_255800, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 144635 32 100.0 34 ................................ CGCATTCTCTGCATGTTGTGCCGTTTTTTATCAG 144701 32 100.0 34 ................................ CTGATCGGCAAGCACGGATCGAAGCAGAAGGCCT 144767 32 100.0 36 ................................ ACGCTGGATCGCACTGGCGCTGTCCAGCGCTCCGCG 144835 32 100.0 34 ................................ CCCACACTCGGCTGCATGGGTCCATCCCCATCGC 144901 32 100.0 32 ................................ TGTTCATTGTGCATCTCGTCCCGCAGCCGCAC 144965 32 100.0 32 ................................ ACTCCGCAGCGGCCGGCACGCGCCGGCTGGAT 145029 32 100.0 36 ................................ ACCGTCTCCCCAGCATCGCCGCAGCGCCTTCGATCA 145097 32 100.0 32 ................................ TTCGCGAGTTGGATGGTCTGTGGCTATCCATC 145161 32 100.0 34 ................................ TCCCCCTCCTGCGCGGCCAACGCCGCGGTCCCAG 145227 32 100.0 34 ................................ ATGAACAAGGCGTGGGACCGGTTTGTCCCCGGCC 145293 32 100.0 35 ................................ AACCGGACCAAGAACCAAGTGCTCGGCAACTCCGC 145360 32 100.0 36 ................................ AGCGCGTCATGACCGACAGGCCCGTTATTCGCTCCT 145428 32 100.0 36 ................................ TACATAAACAACGCTGAGTTCGTAACGATTGCGCAG 145496 32 100.0 33 ................................ GTGTCTGATGAAAAAGGTTGCGGTGGCCTGTGC 145561 32 100.0 35 ................................ TGCGATATCGCAATATCGTAATATCACGATATCAT 145628 32 100.0 33 ................................ ACGTCTATGCCCGCGCTCTCGCCTGCCATCTGG 145693 32 100.0 34 ................................ GGGCTTTGGGTGTCCAGATACTCGAAGAGGAAAA 145759 32 100.0 33 ................................ CGGTACAGCACCTGCGGATCCTGGGCGAAGATG 145824 32 100.0 33 ................................ TTGCCGGTGATGTCGGCGCTGTCGCGGCTGCGG 145889 32 100.0 34 ................................ GAGATCGAATGGGCGGTCTGACCGGGCGTCAGCG 145955 32 100.0 35 ................................ CGCGGCCTGCATCCAGGTAAATTTGACACACCCCC 146022 32 100.0 33 ................................ TGGTCGTCGGAGTTCGGCGTCCAGTTGATCGTC 146087 32 100.0 34 ................................ ATGCTGCTTGGACTGTACAACACCGACACCGCCG 146153 32 96.9 32 ..........C..................... CCATGGGAAGCGGTCTTTATGGTGATCCCACC 146217 32 81.2 0 ..........C....A.....G.TG...G... | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.1 34 GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Left flank : GTACCGCTCCAGCGCATAGACGGCCCCGGCGGTGGAATGGTCGACCTGCCCCCGCCTGCCGTTCGCGGTTGACAGATAGTCCTGAAAGGCCTGAGCATATTTCCCGGAATCGTGCAGCAGGCCCAGCGCCCGTGCGAACGCCGCCGCCGACCCGTCCGCCAACAGTTGGGCACCGAATCCGTGCGCGATCTGGGCGACGAGTTCAAGATGCTTCCGCAGCGGCTCCCATTCGGTCTTGGGCCGATCGGGAAGCGTATGGGCGTAACAGTCCATGACAACCTCGCGCGATGGTGGTTTCCCACCTTACCAGCGCAAGCGAACCTGCGCGAACCCCAAGCTCCCATGGCGATGCCAGGGGGTTCGCACAGCCGAATGACACAGGAGTGCCAACGGATCGAGCGCTGCGCAGGCAAAGGCTCGCCACCTTCCCGGATTTGAGGAGGCAGGTTCGCGCAAACAGGCCTATTCTCCATGCAACAACAAAATCTTATACTCGGGCG # Right flank : CGATAGCAACGGCGGAGGGGCTGAGGAGGTCCGCCGGCGCGGTCACCGGAATGCTGGCCGCCATGGTCATTGTCCGTCGGGCGGTCGCGGAGAAAATGCCCAGCAGTCGCAAAATTCCGGCAGCGCTCGCCCGGTTCAGCATCTCCGGAGGAGGGGAGGGGGGTTATTAGACGTCTAATAGCGCGGGGATCGGTAAGGCCTCGGCTTATTAGACGTCTAATAGCGTGTCACTCGCCGAGCAGCGTATCGATGGCGCTGCGCAGCGTGCGCAGAGCCTCGCGGTCGGCATCGTCGAGCCGGCTGCCGCCGTCGCTGAGATCGCGCAAGCTTGCAACTCCCTTGTGCAGCGCCCGCAGGGTCGTTCGGTGCGCGGCGGGGGCAGGGGAGGAGGCTTTGCGCTGTTGCTTGGCCTCGCGCACCGCTTTCACCGTGAGGCCGGCTTTCGCACGCTCCCACAACTGGGCCTGCAGCGTGGCGTCGCCGAGTTCCGACAGCTCCAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //