Array 1 101077-104279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033784.1 Corynebacterium jeikeium strain FDAARGOS_574 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101077 29 96.6 32 ............................T CTGGCAGAGCTCACGCACACGATCATCGTCAC 101138 29 96.6 32 ............................T CAGTAGCCCAGGACTTCGCCTCAGCCGCTTCA 101199 29 96.6 32 ............................T CTGCTCCTGCGTCGCATCCTCCGACAAGCCAA 101260 29 100.0 32 ............................. AGTGGCTAGCCCAGCCGAAAATGCTGGAAGGC 101321 29 96.6 32 ............................G GACATGTGGCGGGTAACGTTCAGTCCTCATGA 101382 29 96.6 32 ............................T GTGGGCTACCGGGTGATTACCGCTGGGGAGCA 101443 29 96.6 32 ............................T GACTACGAAATGACAGTCGCGGAATTTGCGCA 101504 29 100.0 32 ............................. TTCGATGCGAGTTTCTGCGCCCCAATCAGCCA 101565 29 100.0 32 ............................. GAGGACTCCGCATCCGCTGGGAAAACCACGCC 101626 29 100.0 32 ............................. GGACAATTGGGCGGTGGTGCGGCTGGTGCGGA 101687 29 100.0 32 ............................. CGGCGCTGTCTCCACAGATAACGTCCTCAACC 101748 29 100.0 32 ............................. TGAAGCAACGCCCCACCTACAGCCCCCTAGCC 101809 29 96.6 32 ............................T AACTTGTTTCCGCGCCGTCCGCCCAGCCCTCG 101870 29 96.6 32 ............................G AACCGTCTTGATCTGCTTAGCACGCTGTTGGA 101931 29 96.6 32 ............................T TGCATTGTGCTTATGGCAATGGCGTTTCTTCA 101992 29 96.6 32 ............................G GAACACGCCGGTGCGGACGGTGGTTTCATACG 102053 29 100.0 32 ............................. TTCACCCTGGACGGGGAACCGCCGGACTCGAC 102114 29 100.0 32 ............................. AGCCGTGTCGATGACCGAACCCAGACCAGGCT 102175 29 100.0 32 ............................. ATGATTTCAGCGCGTTGAACATTCATCAGGCG 102236 29 100.0 32 ............................. CAGCGACAAGAAAGAGACTATCAGTGGCCAGC 102297 29 96.6 32 ............................G CCGTTAGTGACCAAGTAATCCTCCGAAACCCC 102358 29 100.0 32 ............................. ACGACGAATAGGAGAACACATGGACATTCTGA 102419 29 96.6 32 ............................T CGTCGCTTCCCACTGATGCGGTTGATCAACAG 102480 29 100.0 32 ............................. AACAGTGTCGTTGACCATCTGGTTCGGCAGGA 102541 29 96.6 32 ............................T CTCTGCAAACCGGGATACTGTGCCTAGTTCGT 102602 29 96.6 32 ............................G TACACCGGCGCGCTGGCGGAGATGCTCTTCAA 102663 29 100.0 32 ............................. CAAGTCGCCACGCAAAACGGCGAACAAACCCT 102724 29 100.0 32 ............................. TTCGAGATGGGTGGCGCGCGCGGCAACGGGCA 102785 29 100.0 32 ............................. CCAGTTCGCTGATGGTGGCGTGGTCACCGCCG 102846 29 96.6 32 ............................G CTCACGAGCCTTATCAATCGACCTCTGGACAG 102907 29 96.6 33 ............................A CGCTGGGTGTTGGTCGAAGGACTGGCAGATTAT 102969 29 100.0 32 ............................. TACGCAACTGGCAAAATGCGCGCTACCGCGTG 103030 29 100.0 32 ............................. ACCAGGGAACCGCGCTCAGTGATCTGCGCATC 103091 29 100.0 32 ............................. GAATGCCGCCACGACACTGCCCGCGTAGCCGG 103152 29 100.0 32 ............................. GGCAAAAGCACAGTGCCGAACAAGTCCTTGCT 103213 29 96.6 32 ............................A GACACACTGGTGCCGGTGACCTGCTCGGTCAG 103274 29 100.0 32 ............................. GTAGCCACTAACAGGGGCTAGGCCAATATCTC 103335 29 96.6 32 ............................T GATGTTCCTAGCGCTTGCCCGGCCGTAAAGTA 103396 29 100.0 32 ............................. AACTGGCCGATAGTCTTCTTCGTCAGCTTCTT 103457 29 100.0 32 ............................. AGGACCTTCGCGGCCATCGACAGGTTGGCGTT 103518 29 100.0 32 ............................. CGTTGGCCTGGAACGGCACCCAAACCAGCCTG 103579 29 100.0 32 ............................. GACAGCAGCACGTCCGAGTAGATGGGTTTAAC 103640 29 100.0 32 ............................. AGCGCTGATTGACACTGACCCGGTGCAGGAGA 103701 29 96.6 32 ............................T GAGATACGGGGAACCATCAGCGATAGTGATTT 103762 29 100.0 32 ............................. GGGCCAATAAACGGCTCAATAACCGCGGCACC 103823 29 100.0 32 ............................. ACACCGGACAGAATCACCGTGCGGTTGGAGTA 103884 29 96.6 32 ............................T CACCAATTGCGACATGTGCGACCCGAACGGCT 103945 29 100.0 32 ............................. CGCTACCGGGCTAACCCCAAGCGAACATGAAG 104006 29 100.0 32 ............................. ACGTACGTGTCCCCAACCTGCTGTGTGCCGTA 104067 29 96.6 32 ............................A CTGCTTAGATCGCCCTGTACTTCATCGGCCGC 104128 29 96.6 32 ............................T CAAGGAATTGCTAGCCGACATGGCAAGGATTG 104189 29 96.6 32 ............................G AAACGCTCACCCCACTCGGGAACGTCCGGGGC 104250 29 86.2 0 .....................CA....AA | G [104267] ========== ====== ====== ====== ============================= ================================= ================== 53 29 98.3 32 GTTTTCCCCGCGCGAGCGGGGATGTTCCC # Left flank : AAACGAGGAATTCGGCGAAGTTATCGAATTGTGGGATTACAGCCGCGGCACGATTAAAGGTGGTACAAACTACTCCTCCGGAGAACCGCCATGGTGACACTAGTTTTGACGAGCTGCCCTGCCGGGTTGCGGGGACATCTGACTCGGTGGCTTGAAGAAATTGCCCCAGGTGTATTTGTTGGGAAAGTTAACTCTCGTCTCCGTGACATCTTGTGGGGACTCGTCATCGAAATGGTCGGCAATGGTCGTGCCATTATGGTTTATCCGGATCGGAATGCCGAACAAGGGTATGCCTACAAGGTGCATCGCCACGATTGGGAGGTCGTTGATGTTGAGGGGCTGTCCCTGATTCGGCGTCCGTTCAAAAACAGGACTAAAGGTGAGGTCGGATTACAACCGGGGTGGTCAAATCCAGCCAAGCGGCGTCGCGCCCGACGTGCTCGTCGAGCTAAGTGATATAAAATTCTTCACTGGGAACCGAACTCTGCTGGTTAATAAGT # Right flank : AGTTTGATTATGAGGGGATATTATCCCCATAGAAACACTCAGGAGGGTAAACGCATGACAAGGTATTGGGATCACAGCGGCAGTATCTACAAAGACGACGGCCAGGAAGACTGGTGCGTTTACAATCCGTCTTTGCGTGATTGGGAGCGCACCCCGCGCGCTAAGGAAGCCTACGACAAGGCAGGCCAAGACTCGTTCGACCCCATCACCGAGCAGCAGGCACTCGCTGAGATCACCGAGCAGCAGGAACAGCATAACGAAAGGGTGAAGAGCAAAATCAAGGAACTGCGCGCGAGAATGAAATCGGTCGGTGCGCAGGCCAGGCAGACCACCGAACAGCCGTATCCAACCTTTACTGAGCAGTCCGCCGCATACCGTGAGGGCGCGCAGGCCTACAACGAGGGCAAATCTTGGCGCGATAACCCGCATGCCCCCGACTCAGGTCTAGCCGCCCCGTGGCGCATGGGCTTCAATACCCGCAAGCAGCAGGTAGCGGAGAT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2390867-2388885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033784.1 Corynebacterium jeikeium strain FDAARGOS_574 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2390866 29 100.0 32 ............................. GATTCCAGCCAAGGAAGATTGACGTATATCGC 2390805 29 100.0 32 ............................. GACTAGGCCGTGGCATGAGCGGGCGAAATGCG 2390744 29 100.0 32 ............................. AGAGTGCAGAGCGCCTTTAGCCATGTATGCAC 2390683 29 100.0 32 ............................. AAATTCGACCGCACCGGAGAAGCAACCCCCAA 2390622 29 100.0 32 ............................. TGGAAGAACTCAGACAGCAACAGCAGCAGGAG 2390561 29 100.0 32 ............................. ATCAGCCATGCCCTTAACAAACGTCAACAGCA 2390500 29 100.0 32 ............................. AAGGTGGTGGGGTAACGATGAAGATTGAGTGG 2390439 29 96.6 33 ............................A TGAAATTCCCGGCTCATCGGTTCTCCTCCTTCC 2390377 29 100.0 32 ............................. TAAGCCGCCTTTTCCTTCGTGAGACGCTTTTC 2390316 29 100.0 32 ............................. CACAGTCACTGTTCGTAAAAATGCTCCGAGCA 2390255 29 100.0 32 ............................. GAACGAGCCGACGTTTCCGCCCACTTAACCTC 2390194 29 100.0 32 ............................. TGAACCCACAACGTTAAAGGGCCACGCACCCG 2390133 29 96.6 32 .......T..................... AGCATCCCCGCCGCCATCAAAGCCAGACGAGA 2390072 29 100.0 32 ............................. ATGATGCCGCCGACACGATTCACCCGGATATA 2390011 29 100.0 32 ............................. GCTCATGCCGCAGCCGCTCCCACACCTCATCG 2389950 29 100.0 32 ............................. GTGTTCACCCCGGGCGCTGACCTGCCGCCGGC 2389889 29 100.0 32 ............................. AAGCGCATCAGGTTAATGAACAGGGCGAGCTT 2389828 29 100.0 32 ............................. ACAATCTGGCGGGCAAGGTTCGGCAACTGCTG 2389767 29 100.0 32 ............................. AAACAAACCGGCGCAGTCGAACGCTCACTCCC 2389706 29 100.0 32 ............................. GGAGTTGAAAATCTGGCCCATCTCACCCATCG 2389645 29 100.0 32 ............................. AGCAATCCCAGAAGGACAAGCCGGACTCGTAT 2389584 29 100.0 32 ............................. AAATACAAGCTGTTTACCTTCGATCTGCTGCA 2389523 29 100.0 32 ............................. GCGTCAATCGCATCATTCATCGGCTTACCCAG 2389462 29 100.0 32 ............................. GCTGAAAACCATCCTGAGAATCAGGCAACGGC 2389401 29 100.0 32 ............................. CATGAGATGGTCTGCCACATGAGGTACTTGCC 2389340 29 100.0 32 ............................. TTGCCCTACGCTAACCCGATTCACTGGGGTTG 2389279 29 100.0 32 ............................. GAGGTTCTAGCGGACGCGGTTGATAAGCGGGT 2389218 29 100.0 32 ............................. ATCGGAGTCTTTCGGCGCGAGGGCTGAGTCCG 2389157 29 100.0 32 ............................. GATTGGTGACCGTATTGGCTGTGAGGAGCCGG 2389096 29 100.0 32 ............................. AGAACCAATAGTGAAATACGGGGTAACACCGT 2389035 29 100.0 32 ............................. AAGGTCAAAGGCGTGTACCGTGGCAGCGCGCT 2388974 29 100.0 32 ............................. CGAGCAAGTGGGATATAAGCCTCGCCGCCGGT 2388913 29 89.7 0 .A......................G...T | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.5 32 CTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : ATTCATCGAAGGGGCATGTTGAAAGAGATGATTGGAGTATTAATGGAGATTCTCGAACCGTATCTGCCAGAAAGAGACGATGACCGGTTGATTGCGGGACGGGGCGACGAAGTGGCTGGGCATACACAGTATGGAAATCGACCCCAGTAACAGTAGGCGCATCCCTTATGTTTTTGGTACTTACTGCATCTAATTTGCCGGAACATCTCCGAGGGTATCTAACTCGTTTCTTAGTTGAAGTTGATACTGGAGTTTTTGTAGGTAACGTGTCGAGACGCGTTCGTGATAATCTATGGAGCCGGTGCAGCCGAGCTATAGGGGAGGGACGTCTAACGATGATTAATAATGATCCCACCCGAGAGCAGGGGTTCGCCGTAAATACGATGGGGAGTAATCGCCGAGTGATTCAGGACTTCGATGGTCTGTTGCTGCCTGTGACCTTATCTGCCGAAACTCGCGGACTTGAAGAAACTTCTTCGTAAAACCGCAGGTCGGGAACT # Right flank : CAGGTACCAAGCGTCAAGCGCGGCACCCACCTTGTGGCTCAGCCTCACCCCTACCGCTTCCGCAGCACCAACACCAGGTTCGACACCGCGAACTCGCGCAGCACCGGCACGTGCACCATCCACCAGGCCCACCACGGGTGGTAGCGCGGGAAAGCGGCCAGCAGCTCGCAGTCGCCGGCCTCCGCGGCAGCGCGCGCCCACTTCAATCCTTCACCGCAACCGACCTTGAACAGGGACTCGCCAAAGTAGTTCTTTGGTCGCTTGCCGTGCTTCTTCTCATACATGCGCCGCGCGCGGTCGCCACCCAGGTAATGCGTCATCCCCATCTCGTGGCCGCCGAACGGGCCGTACCAAATGGTGTACGAGTAAACGACCAGTCCGCCCGGCTTGGTTACACGCAGCATTTCCTCGCCCATCGTCCATGGCTCGGGCACGTGCTCGGCGACATTCGACGAGTACGTCAGGTCAAACGCGTCATCGCGAAACGGCAGTTCCAGCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //