Array 1 2-400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTX01000063.1 Staphylococcus epidermidis strain 764_SEPI 803_403_4944, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2 36 100.0 37 .................................... TTCCTATTAAAGAAGACAATATTCCTAAAGTGGAAAA 75 36 100.0 36 .................................... TCTAATCCATAAGTAATATCGTAAATATTTTTCATG 147 36 100.0 36 .................................... TTTTATTTACAAGCTCATCTTGGTCGTCTTCTTTAA 219 36 100.0 38 .................................... TAAATCTGAGAAGTGTATCACATATCTAGGGTTTCCGT 293 36 100.0 36 .................................... AATATAAGCGTAAAAAGTATTGTCTTTATATTGACT 365 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 37 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : TG # Right flank : TTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 2-537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTX01000130.1 Staphylococcus epidermidis strain 764_SEPI 1183_21246_354309_875+,278+,398_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2 36 100.0 36 .................................... TTCTGAAAGCCAACAATTATTTTAAATTCTTTTCGC 74 36 100.0 37 .................................... CTTTAAGGTAACTGAAATTGATAACACTCTTCCAGAT 147 36 100.0 35 .................................... CATTTCAATCATATCCTTTTTAATAATTTTTTTAT 218 36 100.0 37 .................................... TGTTCGTCTATGCCGTCATAATGTAAATCACTTACTA 291 36 100.0 34 .................................... TTCAATAGCCCAATTAATAACATCTTTCTTCAGT 361 36 100.0 35 .................................... TTAACTTCATTTTCACGACCTACTAATGGACCTTG 432 36 97.2 35 ...................................T ACATCGTCAGCCATGTGGTTTGGTAAGTTTACAAG 503 35 86.1 0 ..........T.................G.-...GT | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 97.9 36 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : TG # Right flank : TGTAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAAAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTTTTAACCAAACACGATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 9259-9654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUTX01000130.1 Staphylococcus epidermidis strain 764_SEPI 1183_21246_354309_875+,278+,398_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 9259 36 100.0 36 .................................... AAATTGTTTCATTATCTAAATTCATTAATTTGTTGT 9331 36 100.0 36 .................................... AAGCAACTAGCTCATCGTTTTCCGTAGCAAATTCAA 9403 36 100.0 37 .................................... AGATTAAAACTATCCAAACCCACACCGGCACATCTAA 9476 36 91.7 36 .....A............AT................ TCATTTCTATCCATTCAATATAAGTTTCACGTTGAA 9548 35 88.9 36 .....A...-........AT................ TCAATAAGCCACGAATTAATGTATACGATATCTCTA 9619 36 83.3 0 .....A.......T....AA.............T.T | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 94.0 36 ATTCGCTAACCACCCCGCCGAAAAGGGGACGAGAAC # Left flank : GTACGTCTTAATATTCAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGATGTTAAACGTTTTTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGACAAAGAAACATTAGATTTTTTAATGAAAAATGTTAATATTGTCGACTACAAATTGAAAAGTACACGTTTTAACTTAGAAAAAGTTAAAATTCCTTCGTTTACAGGAGAAATGGTGTTTAAAATTAAAGGCCCCTTACCTTTTTTACAGTTAACTCATTTTTTATTAAAGTTTGGCGAATTTTCAGGTTCAGGTATGAAAACAAGCTTAGGTATGGGAAAATATAGTATAATTTAATTAAGACATAGTTAAAATTTAGTTGTCAAAAAATGTGACATTTAGCGTCTATAGTACAGGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTCGAACTATTGATATGATTGGTTTTAAAGAACTGTC # Right flank : TTTTTAGCGTAGTAGCAAATATTAAAAAATATATTTGATTTGATAAACTATCATACGTATCTCAATATTATCAGGTATTCCTAGTTCTCAAGACATGAGTTTAGGAAGATGAGTATTTTTAAGATTTTGTAATTTTTTATTAAATATATTTCTGGAAAGATTTTTTTATAACAGTTGTACCATTTTTATAATTGATATTGTTTAGAATATAAAAGTTACTTTACTTGAAGTATCTGGAAGATGTGTAGGTAAATTGTTTAAATAATAACTTTTAGATATTTCATTGGGTAATATCTAAATATTATAATAAGTATTAAATTACTTTCCGAAACATGAGGTAATATATGAAGATTATAAAAATTTCACACGGGAGCTATGTTGGCTGTTAGTCTATTTTAAGTGAAAGATGTCCTCAATTTTAGATAAGGTGTAAAGAAACGGGGATTAAATGTATTATCAAAAATTGGCTAATTGATGATATTTAAAAATGAGGGGATAGA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCTAACCACCCCGCCGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //