Array 1 370076-371480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYB010000001.1 Ruminococcus bicirculans strain D41t1_190614_D1 NODE_1_length_399236_cov_32.665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 370076 32 100.0 34 ................................ GGCTATGACGCACCTACATATGTTAAAACCATGG 370142 32 100.0 34 ................................ CCAGACAAGGCAGGATATCAATAGAGAAATACGC 370208 32 100.0 33 ................................ ATCAAAGATTGATTTATCCAAAATCGACTTTGA 370273 32 100.0 35 ................................ CCTCTCGTTATCTGTGAGGGAGCGTTTGACGCTTT 370340 32 100.0 33 ................................ CGCCGTTCTGATAACCACCAGAACGGGGAGCAG 370405 32 100.0 34 ................................ GTTGCCTGCATGGAGCTATCAGCTGACATAATGC 370471 32 100.0 32 ................................ AAGGTGATATTATAATAACAGAAACAAAAACC 370535 32 100.0 34 ................................ TCAAGAAAAATCACCGCAACGTAAAGCCTGAACA 370601 32 100.0 33 ................................ ATGTACAGTCAGATGTAACACCTATAACAGTTT 370666 32 100.0 33 ................................ TCTAAAGAGCAGAACATATTCTGGGCAACCCAC 370731 32 100.0 34 ................................ GAATTGTCTGGAGGTGACAACAATGACGGATAAG 370797 32 100.0 33 ................................ GTTGAGAAGTGGCACGCTCAGTTACGCCCCGAG 370862 32 100.0 34 ................................ CAAAAGGTATACACGCAGTTTTCAAAGAGCAATG 370928 32 100.0 33 ................................ TACTTTTTCAGGGGGAGGTAGTATAATAAGGGT 370993 32 100.0 34 ................................ ATTATACTACCAATTGTAACAATAATAAAGTATA 371059 32 100.0 33 ................................ TACTTTTTCAGGGGGAGGTAGTATAATAAGGGT 371124 32 100.0 33 ................................ GATTACTTCCACCGCCTGCCACATTTAGTACAA 371189 32 100.0 32 ................................ CTTTTGCTTCGTAGTCCCATACAGACCATATA 371253 32 100.0 32 ................................ ACACAAGGTATCGCAAGAAACTGTTGACGCAA 371317 32 100.0 35 ................................ ATGATGATAGCATACCGCCTATTCAGACGTGGCTT 371384 32 100.0 33 ................................ AATTCCCAGCACAACATACCCATTCTTTATTCC 371449 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 22 32 100.0 33 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGCAAAACAAGACTTAGAAAAGTGGCCAAAGAGTGTCAAAATTATGGACAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAGTAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGTGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAACGCACAGTGAACAAAATCAAACCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TATGATAATGTAAAAAAAGAGAGGTATCATGCAATGATTAAATTATTTTTGAAAGAATACTTAGATGAAATGTCAACTGTATGTAGGGATAATCAGAATAATGTAAGTATCGCTGTAAATCCCGATTCTGAAAGGCAGGGACATCCTTATTTCAAATTTTATAATTCCGTTTATTATGGAGATGCTGCTAAGGTGGTTAGAATTTTATTTAATTCAGCAGATTATGTTGATAATAAAAATGCAGAAGACCAAAAGCTTTGGAAACTTTCGCATAAAGAAAAAAAGTTGCTTAAAGAACTTTTGAGTAGTCCTTCTGCAGAATATTCAGATATGACTATTTGGGAAGCTTGTAAATTTGAGTGGAACTTTGAATATTTAGAGCAATCTATTAACTTAGATAAATATGTAAATGGTGAATATGATAAGGATAAAACATTCACAGAAAATCCTGGCTATGTACCATACAGTTTGGAAATGCCTGATTATTTAGAATTAAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3367-3001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYB010000038.1 Ruminococcus bicirculans strain D41t1_190614_D1 NODE_38_length_12397_cov_31.7325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3366 36 100.0 30 .................................... AAGCTTTTTCTTCATTGTCTACAAATGCAA 3300 36 97.2 30 ..........A......................... TCTATGTAGCTTTTCTTGTAAAACATATTT 3234 36 97.2 30 .................T.................. TCATCTGCCTTCTGCATATCGGACACTTGA 3168 36 97.2 30 .........C.......................... TTACACCTCCTTATGCGATTTTATCGTGCG 3102 36 100.0 30 .................................... TTCATCTTCAAGACCGAGCAGGGACATCAT 3036 36 83.3 0 ............................CTGGC..A | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : TACGCCGCCCTCACGCTTGGGCAGAAATGTGCTTGGGGTCATGCTCATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCATAGAAAATTATTTTGTTGAAATTATGATATAAATGCCGTAAAACGTGATAAATGTGCAAAAACATAGACAAAAAAGTTTTTGATAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATGTAAAACAACCACTTTCTATTGACATTTATGTCCAAAAATGGTATAATATATATATTAAAGCGTCGATAAAATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : GTTTAACATCAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTGATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGCTGCTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTCAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAATAATGACTACAACCAAACTCAGCTTTCCTCTAAGGGCAGCAGCAATATCGAGCTTCATGGTGTAAACGAAGTAAACATCACTTTTTCCAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGAAGCGGTGA # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //