Array 1 1060-2963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYRU01000015.1 Salmonella enterica strain BCW_4390 NODE_15_length_109090_cov_1.85944, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1060 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1121 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1182 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1243 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1304 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1365 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1426 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1488 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1549 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1610 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1671 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1732 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1793 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1854 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1915 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1976 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2037 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2098 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2159 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2220 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2282 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2385 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2446 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2507 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2568 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2629 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2690 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2751 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2812 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2873 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2934 29 96.6 0 A............................ | A [2960] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24690-25755 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYRU01000039.1 Salmonella enterica strain BCW_4390 NODE_39_length_40827_cov_1.87568, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24690 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 24751 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 24812 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 24873 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 24934 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 24995 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 25056 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 25117 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 25178 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 25240 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 25301 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 25362 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 25423 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 25484 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 25545 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 25606 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 25667 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 25728 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //