Array 1 4544324-4545543 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP059992.1 Xanthomonas citri strain T4 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	===============================	=====================================	==================
   4544324	    31	 100.0	    37	...............................	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG	
   4544392	    31	 100.0	    35	...............................	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG  	
   4544458	    31	 100.0	    34	...............................	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG   	
   4544523	    31	 100.0	    35	...............................	CGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT  	
   4544589	    31	 100.0	    36	...............................	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 	
   4544656	    31	 100.0	    36	...............................	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 	
   4544723	    31	 100.0	    34	...............................	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC   	
   4544788	    31	 100.0	    36	...............................	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 	
   4544855	    31	 100.0	    37	...............................	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC	
   4544923	    31	 100.0	    35	...............................	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA  	
   4544989	    31	 100.0	    35	...............................	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG  	
   4545055	    31	 100.0	    34	...............................	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT   	
   4545120	    31	 100.0	    34	...............................	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA   	
   4545185	    31	 100.0	    34	...............................	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG   	
   4545250	    31	 100.0	    35	...............................	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC  	
   4545316	    31	 100.0	    34	...............................	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG   	
   4545381	    31	 100.0	    34	...............................	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT   	
   4545446	    31	  93.5	    36	T...........T..................	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 	
   4545513	    31	  96.8	     0	.G.............................	|                                    	
==========	======	======	======	===============================	=====================================	==================
        19	    31	  99.5	    35	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	                                     	       

# Left flank :   ACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG
# Right flank :  CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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