Array 1 3066499-3064943 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037882.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS014875 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3066498 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3066437 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3066376 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3066315 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3066254 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3066193 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3066132 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3066070 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3066009 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3065948 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3065887 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3065826 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3065765 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3065704 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3065643 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3065582 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3065521 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3065460 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3065399 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3065338 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3065277 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3065216 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3065155 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3065094 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3065033 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3064972 29 96.6 0 A............................ | A [3064945] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3084123-3082630 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037882.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS014875 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3084122 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3084061 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3084000 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3083939 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3083878 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3083817 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3083756 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3083695 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3083634 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3083573 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3083512 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3083451 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3083390 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3083329 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3083268 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3083207 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3083145 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3083084 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3083023 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3082962 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3082901 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3082840 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3082779 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3082718 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3082657 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //