Array 1 47135-49833 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTT01000013.1 Lentzea atacamensis strain DSM 45479 Ga0215649_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================= ================== 47135 37 83.8 38 C........A....TT...A....C............ AACAACGAGGCGTACAAGCTGCAGCTGAAGGCCGGGCG 47210 35 83.8 36 .......A..T--.........G.C............ TATTGCTGCGAGGAAACGAGGTACAAGGTTGGTCAT 47281 37 81.1 35 A...T..C...T....A...C...C............ ATGCTTCGGCTACCCATGCAGCTGCGCAAGCGCTG 47353 37 81.1 34 .A.........T......A.C..AC...A........ GCCCAGCACGGCGGCACAGTCAGCTGGGCCGCAC T [47372] 47425 37 83.8 35 .A.......T.....G...TC...C............ CACCACGAGGTCGGCACCGATCACTACTTGTCGTC 47497 37 83.8 109 .A........T...G.A...C...C............ CCCAACATCCAGGCCGCCCTCAAGACCAATCAGATCAGAGGCGCTGGGCGTCCGCGCTCAGCGATTCGCAACCACGTAGTCATGATCGCGAGCGCCTGGGTGATCAGAG 47643 37 81.1 35 ......TC....A....T....G.C...........T GTCATCGTCGACCTGGACGCGGAAGAGGTGTTGAT TC [47658] 47717 37 81.1 37 .......C.C....T.....ATG.C............ AAGACCGGCGACGAGGCCGAGATCGGTCGATGCGAGG T [47732] 47792 37 70.3 34 .A.....G.C..TA.TCA..C..A......A...... TTGTGCGTGGTGCCGTCCAAGAACCGGAAGAGGA 47863 37 78.4 37 .T...A....A......TA..T....G....T..... GAGCAGTAGCCTCCCAACCTGGTGCCCGAGGATCTGG 47937 37 75.7 34 .A........A.T....T.TC...C..A.....T... TGCCATGCCGGCTACGACCGGCCGTCGGCTTTTA 48008 37 89.2 85 .A..................C...CA........... AACAAGCCACTCAACGACTGTGGCGGGTTCGACGCCGAAGCGCTGGGCTTGAGCGCTAACTGGCCGCGCCCGTATTGTGTGGCGG GC [48028] 48132 37 86.5 38 A............A........G.C..C......... GTCGGCCTGATCGTGTGGTCCGGCGGCCGCTTGGTCGA 48207 37 91.9 34 ..............TT........C............ ATGGTGCTGACCGCCACGCTGGTGACGGTCTCGG 48278 36 89.2 34 .....A............-.C...C............ GTCATCGGTACCGTCCTTAACGACGGTTTCTTCG 48348 37 91.9 36 ..........A.................A..A..... CTCGGCCCGTCTTCCTACGCGTTGCGCCGCCTTCTC 48421 37 83.8 36 .T......C.....T.........C......T...G. AACCTGGTGGGCCGCAACGCCTCGAAGGCGCTGTTG 48494 37 70.3 36 AA..T.T.......TG...T..G.C.G.........T TTCAGCCAGTGCGCCGGGTTGTCCGTGTCAGTGGAC 48567 37 83.8 35 .........A...........TGACA........... AACCGCGGAGACGTGCACGGTGAGGCGACGAACCC 48639 37 81.1 36 ..G........GT....T......CTT.......... ATCGCCGAACTCGACGCCGCTAACGGCTGCCAGTGG GT [48652] 48714 36 91.9 57 ............-C..........C............ TTGAACGAGGACCGGGAGCCGTTCGAGCTGGACGGCGATCGCGGTGTTCTGTGCGGT 48807 37 62.2 39 .TG..TGC..TGA..G.T....G.C.....G.....G ACGGCAGTGAGGCTATGAACAGCCAAAACGCATCTGTAT 48883 37 89.2 35 .........A........A.C...C............ CGCTACCTGATGCTGATCACCGTGACGGCACCGAG 48955 37 91.9 35 .T...............A......C............ ACCGCCGGATGGCAGGCCTCGGGCTTCACCTTGTC 49027 37 89.2 36 .G......A...............C..A......... ATGATCGGAATGTCGCGGTAGATCGGGATATGCAGG 49100 37 86.5 35 .............CT.........C.......A...T ACCGAGGACGCCGTGCGTGCCCGCACGAAGACCGT 49172 37 100.0 38 ..................................... CGAGACGATCGGTGGTACGGCACCTCCTATGGCGACGT 49247 37 83.8 35 ......T.......T.........A.....CT....T ATGGCCTACATGGCCACCAACGGTGAGCTGGTGGA 49319 37 78.4 4 .............CT....T....C..C.C.....GT CGGT Deletion [49360] 49360 37 75.7 38 .TG.T..C.A...CAT........C............ AACACCATCGACTCGGATGGGGACGTTACGCTCCCTAG G [49366] 49436 37 89.2 35 .........C.....T.A......C............ TGGGCGGTGAGGATGCCGTTGGTGAGGCCGGCCGC 49508 37 91.9 36 .........A..........G...C............ CCGTGGGACTACGTCATCGACCGGGCGCGGACAATC 49581 37 91.9 35 ...............T......G.C............ GGATTGCCGCCGGACTCGCGGATGATCAGCGTGAG 49653 37 91.9 36 ..........A....G........C............ CCGTCCACGGTGGTCGACTGGCTCGACTCCTACGAC 49726 37 86.5 35 .......G.......T.A.................GT CGCATGCTCGGGCCATATGAGATCGACCGTAGCTG 49798 36 78.4 0 ..G......T.T....A..-..G.C.........G.. | ========== ====== ====== ====== ===================================== ============================================================================================================= ================== 36 37 84.2 39 GCAGCGCTGGGCGTCCGCGCTCAGTGAGGATCGCAAC # Left flank : GCTCACTCGATCACGCGAGTCACCCAGACCACCGAGAAAGACATTGAAAGCGGTGAGTCCACCGAGATGGGCTCCAAGTGGACCGTCCACTACGGACTCTATCGAGCCTACATCCACTACAGCGCTTCGCGAGGCGTACAGACCGGCGTCACCGAGCAGGACCTCGAGACCCTGTGGAAGACACTGGAGAACCTCTTCGAGCACGACCGTGCCAGCGGCCGTGGCGAGATGGACGTCAAGGGTCTGTACGTCTTCAGCCACGACGACGCTTACGGCCGTGCGCGTGCCAGCGAGCTCTTCTCGCGCGTGAACGTTTCTCTGCTCGAAGGGGTGTCAGCGCCTCGTTCGATCGGCGATTACAAAGTGGACGTTGCCGACGACGCCTTGCCGAAGGGAGTCACATTGACCTCAGTGGTGAGCTGACGCACGTTGGCTTGTCGGAAGTATTGGGATCTTTGCAGGCAACGAAGCCCTTGACGACACTGTGATGGGGGGAGCGT # Right flank : CACCAGCGTTGGCGTCTGCATAGTGCTGATCGGCCTGAAGGAGTGGATCTTGGGAGGCTGTGCAATAGGCGGTTACGTACATACCCGTTCGTCAAGTACGCCGAACTGCGTTCAACGTACCTGTTTACGCAGGTCAGCGGCTCGTGAACCCGTCTGGGGGTCAAGGGGTCGCAGGTTCAAATCCTGTCGTCCCGACGGCCAATGACCAGCGGGTTTACCTTTCGAGGTAGACCCGCTGGTGTCATTTTGCCCGATTGTGGTCGCAACGTGGTCGCGCTATGCCGCTTCGGCTTCCTTCAACGCCGTCTCGATCGCTTTCACCGCATCGAGTGCGACGTGGCGGAGCAGGTGGCCGTAGATCTCCGTTGTCGTCGACAAGGTCGAGTGGCGCAGTGTCTTGGACGCCATGGCCAGCGGAACTTGCGAGCTGAGCATCGTGGTCGCGGCGAAATGCCGCAGGTCATGGACGCGGATCTTGGGTAGTCCGGCCTGCCCAGTGA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.21, 5:-1.5, 6:0.25, 7:-0.38, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGCGTCCGCGCTCAGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [56-46] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //