Array 1 70036-68449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLEN010000020.1 Chryseobacterium lactis strain CL1 NODE_20_length_106405_cov_94.886784, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 70035 47 100.0 30 ............................................... CCGGAAGGCGTGGCAAGCTCTATCCGATGC 69958 47 100.0 30 ............................................... ACTTTTTCTTACTATAAATTTCATATTTAT 69881 47 100.0 30 ............................................... CTAATGAAACAAGTCATGTTTGCCCACAGT 69804 47 100.0 30 ............................................... ATACAGGGGTTTGCTAAAATCATGCGAATT 69727 47 100.0 30 ............................................... CGGCCCAGACGACTGGATGGTCCATGTCCT 69650 47 100.0 30 ............................................... CCTGACGATCCAAAGGAGGCAATAGACCTG 69573 47 100.0 30 ............................................... TAGATATTAATAGATCACTGAAAACAAATA 69496 47 100.0 30 ............................................... TTCAGTATAATTTATTTGTTTGGGTTGTGG 69419 47 100.0 30 ............................................... CGTAACCATTTACAGTACTGAGCGCAACCG 69342 47 100.0 30 ............................................... AGTTAATGCTTATTGATGGGTACCCGTTCA 69265 47 100.0 30 ............................................... AGGCTGAACGCAAGGAAAGAGAAGAGGCCC 69188 47 100.0 30 ............................................... AGTTACATCTGGACGCTGTGGACCTTGTTA 69111 47 100.0 30 ............................................... GAAAATAGAAATCAGCACAACAACAAAAGA 69034 47 100.0 30 ............................................... AGTACTTGACATTGAAACTACAGACTTTCT 68957 47 100.0 30 ............................................... GAGGCAGAACAGGTGGCGTTAAACCAATTC 68880 47 100.0 30 ............................................... GTTATTACTTTTAAACCTGAACCAGGTATC 68803 47 100.0 30 ............................................... GAAGCTATCACACGTGCGCAGCTTCCTGTA 68726 47 100.0 30 ............................................... GAACCCGGCACGAGTTCTACCCGTTCAATG 68649 47 100.0 30 ............................................... TTGAGCTACATTTAAAACCTTTTCAATCAG 68572 47 100.0 30 ............................................... CTCCTTGGTAGCTCACATTTTGCCAAAACG 68495 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 100.0 30 GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Left flank : TTAATTGATCATTAAATGTCTTTTACCTGTATTTTTTATCTGCTTATCGCCAACTATGATGGCAGAAATTTCAAATCCAAAGAAATCGTAATTAATGAAGATTGTCAATTTCTCAAAATTCAATAACTCACTGATTAACTAAGATTTGTAAATTAAAACCATAAATCTCCTTTTTGAAACAAAGAGGACAGTTATTCAAAATAATTGCTTAAATTCACTATACATAAAATACTAATAATCATGGAAAATTTAAGAAAAATTACAAGAACCGGATTGAAATCAATTCAAGGAGGAATAGAAAGATGCATTCAAGACTGCTTTCAGGAAGGATACCGAAAATGCTGTATCAAAGGAAAGCCTTATGTATGCATTCCGACTAACCAATTGTGTGTATAAAAAAAATTGGGTATAAATTTAAGACCATTTAGTAGATGGTCTTTTTTGTTATTATTTTTGTGATTAGTCACAGCTAACCACGGAACCCAGGACCGTTCTTTCCG # Right flank : CTCAAAATTTAATCCGTTGAAATTCAACGGATTTATTGTTTATTTAGAATTTAAAAATTAGAATAATTCAAGCTGTTGGAACGTTGGTGGTGGTTCTTCTTTATTCCTGGCAAAGAAGATCTCAATGTCACCAAACTGCTTGTCTGTAATACACATAATGGCAACTTTCCCAGCTTTTGGAAGCATAAATTTTACTCTTTTAATATGAACCTCCGCATTTTCACGGCTTGGACAGTGCCGTACATACATCGAAAACTGAAATAAAGTAAACCCATCATCAATGAGTGCCTTCCGAAAACGGTTCGCATCTTTCATATTCACTTTGGTCTCAGTTGGGAGATCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGAATTCATATCAGTTCAGGATAAGAGATCAGGCGCTTTTCTCCCGTATAACATTTATACAGTGATGTAGCTGTTGTTTTTACCGCAACCAACAATGGTCTGGTTTTACCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 205937-206962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLEN010000004.1 Chryseobacterium lactis strain CL1 NODE_4_length_264048_cov_97.585004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 205937 36 91.7 30 .....G....T............T............ TCATGTACCAGAAAAACCGGGAAGCTAAAT 206003 36 94.4 30 .....G....T......................... CAGGTTCATCATGTGTTATTAATGGGGATG 206069 36 100.0 30 .................................... TTATACTTTGGAGCAGGAATAGACACCACA 206135 36 100.0 29 .................................... ATCCTGTGTTTATTACCCCTTCAGCTAAT 206200 36 88.9 31 ..........T..A.......A.........T.... CTAGTGCTCAATACGGTAAATGGCTTTTTGG 206267 36 97.2 30 ......................C............. TTTAAGACGAATAAACCAACCTATAAGGCC 206333 36 100.0 30 .................................... CTATTTGAATGATGAACCTTTTTGGATTAT 206399 36 94.4 30 ...................T........T....... TTTAAGAGGATTGTCTAACAAATCATTGGC 206465 36 97.2 30 ...................T................ TTCAGTCGTGATTTTTTGATTGAACAATTA 206531 36 100.0 30 .................................... GGGCTAACGTCATGCCAAAATGAAACGACT 206597 36 100.0 30 .................................... TATTTAGGTTAATATATGAACATGCAAAAT 206663 36 97.2 30 ...................T................ TTCAGTCGTGATTTTTTGATTGAACAATTA 206729 36 100.0 30 .................................... GGGCTAACGTCATGCCAAAATGAAACGACT 206795 36 100.0 30 .................................... AGGATTAATTCATAAACGTGACGGAGTGTT 206861 36 100.0 30 .................................... ACTTTAGTGTTTAACTACTAAAATCATTAC 206927 36 83.3 0 ...................T........A.T.ATT. | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 96.5 30 GTTGTTAGTACCCTTCAAACTGTGATACGTCCCAAC # Left flank : GAAGCCGTTACTTGTATGTTTTATGAAGATTATCCCTGTTTTAATTTTGCATTTTCCGCCTTTAAAATGGTGATTTGTTCTTTTAAAAGTTTGATGTACTCTTGCTGACTTTCTAATAGATAATTTGGGATATTACAAAACTGATTATAGTTTATACTTGCATTATCATTGAAGCTTGCGCTGTCATTAAGTGTCGTATTTTGATTATTTTGAGCAGTTCGCTCTTCTTTAATATCTTCTACAGAAACATCCAAAGCTTTGGCTATTTTCTCCCATTCGTCATCAAATATTTTAACGTCTCCACTTTCTTTTCTGCTGTAGTTGGAGACATCAGTTGCGATAATATCAGCAATCTGCTGTTGTGTAAAACCTTTCTGCTTTCTTGTAGTTCTTAGTTTCTCCATTGTCATAGGGTGGGTGTGTTTTTTACAAATATAGAAAAAATAGCGGTAACAGGTAATAATAGGAAAATTATTTCTTGAGCCTGGCCGCTATTTTAG # Right flank : CCATCTATTTATTGTGATCCTCACATAATCAAATTTATATGCTAATTTCAAAGAGCATTAAAATAATAAACTAGCTATTTTCTTTTAGTTTTTGAACAGCTAATTTTATCAAGTTCAGATATAGTTTTGCCGCAGTATTATTTTGTATTTCCGGATAGTTTTTCCTGATGAAATTGTAAAACTGTACTTCCGGCAATTGGTTATGAGCAAACTGGTTTCTAATCATTATGACCAGAAAAAGGAGCTGTACCATTTCAGATTTTGTTTCAAGTATTTCAGAAGGAAGCGTTTTAAAGTCATTTTCCTTGAGGCTTTCAAGCCAAAAGTCTTCGTCTTCCTTATAGAAATTAGAGTTTTTTCTTAAAATACCGTTCACTACATACATTTTGAAGTTAGGATGCCAGGCATTCTTTTGAACTTCCATCTCAAACTCTCTGGGATGGTTGATCCCGTCCCAAGGCCAATTGGATAAAGTCTGCAATTCCAGATTCTGGATTTCT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGTACCCTTCAAACTGTGATACGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //