Array 1 71898-72404 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211068.1 Marinobacterium jannaschii DSM 6295 Q354DRAFT_scaffold00011.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71898 28 100.0 32 ............................ ATTGGGCACCCAAAGGCGCGATTATCTTGATG 71958 28 100.0 32 ............................ ATAGTCGCAGGCCCGCAGCTCGCGATAGTCGA 72018 28 100.0 32 ............................ TGCTGGCCTGACTGCCAGACCACGGTTTGAGG 72078 28 100.0 32 ............................ TTTATCCGGTGCCTTGTGGCGGGTTTGTCGGG 72138 28 100.0 32 ............................ AATAATCAATGCTGGTTTCAAACTTCCGGAGG 72198 28 100.0 32 ............................ TGCTCAGCAGTTGGGCAGAATTCGTCGAGATT 72258 28 100.0 31 ............................ TGAGCAAGGCAGCGGTGCCGACGATCAGGGG 72317 28 96.4 32 ...................A........ AACCAGCCGCATCAGCATCGGTAACACCCCAG 72377 28 78.6 0 ....................AGTG.T.T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CACCCGGGTCAACCCGCTGCTTTTTGTAGAAGGAAAATAATTTCCAGTCACAACACAGGTTGGGATGCGCCGCTCACAATGATTGCCAAATCAAGGCATCGAAGACGCGGCTCAACCCAACCCTGGCCCGAACCCGAATCTCACAATATCCCACCACTATCGCCACCGCATCCGGCTGCACGACGGCATACCTAACCGATCCGTGTCATGTGCGAAAGCCCCTCAGATGCCACGAACATCAGATGCCACGAATAAGTCAAAACCAATCAGCAAAGTCTTAAAAGCAATTAAAACGTCCGGCACGCCTGCCAGAGCCAGGCAGTAACCCCACGAAGAGATTGCCCATATCCGTGTTTCTTAGCAAAGCTTCCAACCCTTTTTTCAGGGAAGGATTCAACCTATATAAATCAATCAGTTAGCGCCCACCCCAAAAAAAGGGGAAAATGACCGATTCCGCCGTAAGCTCTTTAAAAACCAGAGAAAACGCTTTAAGTTCTCTA # Right flank : TTGAGATATAAGGACAGGAGCCAGCCATAGGCTGGCCCCTTTCCTGGATTTCACTACGTCCACATACAGTCGTCATTCAAACAATAAATCCAAAGAATCAGGCTGCGTTTTTATCTCAAGCCCGGCATACTGGCGGCTAAGGAAGCTCTGTTTAATGCCATCCAAACAAAGGACTTGTACTATGGATGACTTCTCCCCGTCTGACCTGAAAACCATTCTCCACTCCAAAAGGGCGAATCTCTACTACCTGCAGCATTGCCGGGTACTGGTGAACGGTGGTCGAGTGGAATACGTCACCGACGAGGCAAGCCGCTCGCGCTACTGGAATATCCCCATCGCCAACACCACTTGTATCCTGCTGGGCACGGGTACTTCGGTGACACAGGCTGCGATGCGGGAGCTGGCGAAGGCCGGGGTATTGGTCGGATTCTGTGGCGGTGGCGGCACCCCCTTGTTCAGCGCCAATGAAATGGATGTGGAAGCGGCCTGGTTTGCGCCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81854-83741 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211068.1 Marinobacterium jannaschii DSM 6295 Q354DRAFT_scaffold00011.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 81854 28 100.0 32 ............................ CATCTCAGCAGTCGATGTAAGGAGCTGACTAA 81914 28 100.0 32 ............................ GACAGCGCTAAACGGGTGTTTGTGGATCTGCA 81974 28 100.0 32 ............................ ATAGCGATGCTGGATCCCGCAATCAATGCAGT 82034 28 100.0 32 ............................ AGTGCCAGCTTCCAGCTATCAAAGCGCTTATA 82094 28 100.0 32 ............................ CACGCCCAGGCAGGCAGCCCCGCAGACACAGT 82154 28 100.0 32 ............................ AGTGCCAGCTTCCAGCTATCAAAGCGCTTATA 82214 28 100.0 32 ............................ CACGCCCAGGCAGGCAGCCCCGCAGACACAGT 82274 28 100.0 32 ............................ CGGTGGAAGCGAGCACCGTCAGATAATCTGCT 82334 28 100.0 32 ............................ TGCGAAATATTCGTAATGCGCCCCCTGATCCC 82394 28 100.0 32 ............................ GTGACACCGGAGTCTAAGACCAGATTGCTCTC 82454 28 100.0 32 ............................ TGCAGGAAGCAGGATTGATGGCAAAAATCAGA 82514 28 100.0 32 ............................ TCAGATACCCGGGCCGGTTTTCGGCGGATCAG 82574 28 100.0 32 ............................ ACCGCCAGAACACCAATACAACGGCCGTAGCA 82634 28 100.0 32 ............................ TGGATATCGAGACAGATGAAAAGGGCCGCAAC 82694 28 100.0 32 ............................ GCTACCGAACCTCTTGCCTGCTAACGCAACGT 82754 28 100.0 32 ............................ TTCACCCGCCAGCGCACCCAGCGGGCTATATC 82814 28 100.0 32 ............................ ATAAAGATCAATGGCATAGATATGCCGCTTTA 82874 28 100.0 32 ............................ ATTGTACCAATTACCCACATAGTGGAAGAGGG 82934 28 100.0 32 ............................ AATGAAACCCGTGTGGCAGCGCTGGATACTCG 82994 28 100.0 32 ............................ ACTATCGAGGGTTAACGATGAAAGTCGGTCAA 83054 28 100.0 32 ............................ AGAACCCCAGCGTGTTGCTTACGCCGGTTGTG 83114 28 100.0 32 ............................ AATAATGCCGCTGTCACCGCAACATCGACCGC 83174 28 100.0 32 ............................ AATCGAAGTCATAAACGGCTTTTCGCGGCATA 83234 28 100.0 32 ............................ ATCGATTATTTCCATTCCATTCAATTGGAGGC 83294 28 100.0 32 ............................ TTGCATAATCGCCCAGCCCATTGCCTACAGAA 83354 28 100.0 32 ............................ ACCGGCAGCGCTTGCCTAATGACTGTAGCCAC 83414 28 100.0 32 ............................ AAGGAGATTCCCCGCCGGGGCGTGCCGCATAT 83474 28 100.0 32 ............................ AGCTCGCCAGCGCGAACACCCAGCAATAGGTA 83534 28 96.4 32 ......................C..... TGAAGGGCAGTCATACATGCTTTTGTGCCTGT 83594 28 92.9 32 G.....................C..... ATCAGGCCCGTATTTTTTCTGACACTCATCGT 83654 28 92.9 32 G.....................C..... TTACGACCCTGAATTACGTTTTTCATCCTTTA 83714 28 92.9 0 G.....................C..... | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.2 32 CTTCACTGCCGCACAGGCAGCTAAGAAA # Left flank : GCCGATGCACTGGATCAGTTAGGTAACAGCTGGCTACGCGGTATGGCAGACCATATCAACAGCACCGGGATTGAACCGATCCCGCAGACAGCTAGCTACTGCACAGTGCGCCGCCGTCAGTTTAAATCCAGTGCCGAGCGGTTACGCCGCCGCCGTATGAAGCGCCATGGCGAAAGCTATGAGCAAGCCGCAGCACTGATTCCTGATAGTGTGGAACGCAAGTCACAGCTGCCCTTTGCCACTCTGCGCAGCACCAGCAGCGGCCAGCAGTTCCAGCTATTTATCGAGCAGAGCGAAGCTACGGCAGAACCGAAAGACGGGACCTTTAACCGCTACGGTTTAAGCCAGCAAGCCACCGTACCCTGGTTTTAACCCTTTTTTGGGGCTGATTTTTCAGCCCTTTTAAATCAACAACATAGCGTTTACCCCGAAAAAAGGGGTAAACGCGGCATTTACTGCCAAGCTCTTTAAAAATAAGGAATAAACCGGCTACACTTCTA # Right flank : ATACTGTCCAACCGCTTTTAGCTGGCTGTTTCAGTTCACTGCCGCACAGGCAGCTTAGAAAAATACAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCCCAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //