Array 1 265375-264811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024595.1 Porphyromonas gingivalis strain KCOM 3001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 265374 36 100.0 30 .................................... GAGCAATCCGCACGTGTTCGCGTACGACTT 265308 36 100.0 30 .................................... GAACGCCTGCCAAGGGAGAGATATTCCCTT 265242 36 100.0 30 .................................... TATTTCGACAACGAGATAAAACACTTCACC 265176 36 100.0 30 .................................... CAAGATCGGGCATACCCGCCTGCGTCTGCA 265110 36 100.0 30 .................................... ACTAATATATTAGATACAGTTAAAGAAAAT 265044 36 100.0 30 .................................... GCACGCACAAGACGAGGACAGGTATAACCT 264978 36 100.0 30 .................................... TGATAATCTATAGGCACGAATCGAATCTGT 264912 36 100.0 30 .................................... GATACTCAAGATCGCCGGCTCAAGTATTCT 264846 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : CATTGTGTGGAAAATAAAACACACTAATAACCAATGTGTTGTGCCATTCCTTTATATCGAACTCACGTTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACTTTTCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACAATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1082408-1083036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024595.1 Porphyromonas gingivalis strain KCOM 3001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1082408 36 100.0 29 .................................... ATTTTCAGTAAGATTAAAATGTTCTCTGT 1082473 36 100.0 30 .................................... CATGACGTTGTATTGCATCGACCGTATCGA 1082539 36 100.0 30 .................................... TGGGGAAACGCTCTGATAGGATCAGAATGT 1082605 36 100.0 30 .................................... TCATCAGGTGGTGATGATGTCTGGATTGCC 1082671 36 100.0 30 .................................... AAGGGCGAAACTGTACTCGACATCTGCAGC 1082737 36 100.0 30 .................................... TTTTTTGTTTTCATACTATGTATGTTTTTG 1082803 36 100.0 30 .................................... AGTTTGAATATAGACGGTTTTTTATCATTA 1082869 36 100.0 30 .................................... CTAACCCAAAGGCATAAGAGTTGGCGATTT 1082935 36 100.0 30 .................................... GATAAATACTCTAAGTCTTCAGCCTCCTCT 1083001 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTTCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCCCGATTTCCTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTCTATGACCGTTATGGCTGCGAAGCCGATGTTTCCATCGTAGAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 2282123-2271481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024595.1 Porphyromonas gingivalis strain KCOM 3001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2282122 30 96.7 36 A............................. TTCCCTGAGCCGGAAGTCCTCGTAGTCTCGACCGAC 2282056 30 96.7 36 A............................. GACTTGTGCCCACCCACTTGATAGACGGGCTGAGAT 2281990 30 100.0 36 .............................. TTTCGCCTTGCTCCTGAAAGCCCTTTACCTCCGTCT 2281924 30 100.0 36 .............................. GCCGCAGTTCGACTGTAAGCTCTGCAATAGGCTCGT 2281858 30 100.0 36 .............................. TAAGAGCTCCTGTTTTAATAGTCTCAAAAGAATTCA 2281792 30 100.0 35 .............................. TCGGCGGGATCGGTGGATTTGCCCTTGCCGCGAGG 2281727 30 100.0 36 .............................. GAGAGCAATATGAAAAAGCGTATTCTTCAGAAACGC 2281661 30 100.0 36 .............................. CGGCGAGTGTTCGGCTACAAAGAGTGTGCCGAGCTG 2281595 30 100.0 35 .............................. ATAGCACAACGCCGACGAAAATAAGGCCGCAGGCG 2281530 30 100.0 36 .............................. GCCGATCCCTACATCAAGCTCAGAAAGAACGAGAAC 2281464 30 100.0 35 .............................. GAAAAATCCATTCTAATTCTTCCATTGATTATTCT 2281399 30 100.0 36 .............................. GACGATTTCACCTGCCGTATCCGTGTATCCTCCCCA 2281333 30 100.0 36 .............................. ACTACCATGCTCAGATCATGCAGAGTGATGTGTTCA 2281267 30 100.0 36 .............................. GTTTAATGGCAAGAAGATTCTATACACATGTATAGA 2281201 30 100.0 36 .............................. TACGAAGGCGGCGTTCGTCATCGATGGTCGCGATGC 2281135 30 100.0 36 .............................. CGAGGCTTTGAGCTGCTGTAATCGACTGATCGATCG 2281069 30 100.0 36 .............................. TAAACCTTTTACGCTCTAAGCCAATAACATAAACTG 2281003 30 100.0 34 .............................. TAGTTAGCATTATTTCTACTATCGCAGTAGCTGT 2280939 30 100.0 35 .............................. TTCCTTTCTAACCTAGTCTGGAGTATATTTTCACC 2280874 30 100.0 36 .............................. CCCCTTTGGAGGACGGAGATTCTATAGACCCAACAT 2280808 30 100.0 34 .............................. TAGCATTATTTCTACTATCGAGGAGAATACTTTA 2280744 30 100.0 35 .............................. ACGTTCCTATTGATGCTAATGTAGTTATTCAAGCA 2280679 30 100.0 36 .............................. TCAGCTACAAGAGTCGCACGATCCTGATACGCAAAG 2280613 30 100.0 36 .............................. CCAGTGGCGGATCGATTGAAATATACGATTCTCTCT 2280547 30 96.7 36 ..........................G... CTTGTTCATCTAACAAGATGGACGTAACAGAGTATA 2280481 30 100.0 37 .............................. GCTGCTTGAACTATCCGGTATCGAAAAGAACATAAGT 2280414 30 100.0 36 .............................. TTTCGATTTCTTTTTCGTTCTTTCTATTTTCAATAT 2280348 30 100.0 35 .............................. CATTGATAGGGCCATATACCGAAAAGCCGACGTAT 2280283 30 100.0 39 .............................. CAGCGCAGGTTACCACTTCAAAAATGGACACATCTATAA 2280214 30 100.0 36 .............................. GCTACGCTACGCGAGAACGTCGAGGGGTACAAAACT 2280148 30 100.0 35 .............................. TTCCGCCAGCCTGTCGAAAGCGTTGTCCCTTTCGA 2280083 30 100.0 36 .............................. CAATTATCGCTCCTAACATGGTTATTCTTCTTTTTT 2280017 30 100.0 36 .............................. ATTGCCAAGGGTCGCCGTAACCCCCGACGGCACGAA 2279951 30 100.0 37 .............................. GGAAGATTGCTTCAATCTCCATCGCCTCTGATACTTT 2279884 30 100.0 36 .............................. TTGAGGAGTTGTCTCTGTAGATAAACCGTGCTATGT 2279818 30 100.0 36 .............................. AGTTGATTGCGCTTATCAGCTGCGTCTTGTTCGTGA 2279752 30 100.0 35 .............................. TCCCGGCTTCTCAGGGTGACGATATATATCGTGAT 2279687 30 100.0 35 .............................. CCAGTTGAAGGGTTCGCAGCACTTCTCATCATCGA 2279622 30 100.0 36 .............................. GCCGAGTATGAGGAGCCGGCATAAAGCGTGAGTACA 2279556 30 100.0 37 .............................. TCTTCGTTTTTAAATTTTAGCGTTCGATATTTTATGT 2279489 30 100.0 36 .............................. TTATGAAAACGACAGCTTTAGTAGAAAGAAACAGCG 2279423 30 100.0 35 .............................. CAACCTTGTGGAAGAGCTTTATAAGGTCTTGGTTC 2279358 30 100.0 36 .............................. CCAGTGGCGGATCGATTGAAATATACGATTCTCTCT 2279292 30 96.7 36 ..........................G... CTTGTTCATCTAACAAGATGGACGTAACAGAGTATA 2279226 30 100.0 37 .............................. GCTGCTTGAACTATCCGGTATCGAAAAGAACATAAGT 2279159 30 100.0 39 .............................. CAGCGCAGGTTACCACTTCAAAAATGGACACATCTATAA 2279090 30 100.0 36 .............................. GCTACGCTACGCGAGAACGTCGAGGGGTACAAAACT 2279024 30 100.0 35 .............................. TTCCGCCAGCCTGTCGAAAGCGTTGTCCCTTTCGA 2278959 30 100.0 36 .............................. CAATTATCGCTCCTAACATGGTTATTCTTCTTTTTT 2278893 30 100.0 36 .............................. ATTGCCAAGGGTCGCCGTAACCCCCGACGGCACGAA 2278827 30 100.0 37 .............................. GGAAGATTGCTTCAATCTCCATCGCCTCTGATACTTT 2278760 30 100.0 36 .............................. TTGAGGAGTTGTCTCTGTAGATAAACCGTGCTATGT 2278694 30 100.0 36 .............................. AGTTGATTGCGCTTATCAGCTGCGTCTTGTTCGTGA 2278628 30 100.0 36 .............................. TTTAAGTACGATAAGAAATAATTATAATAAGAATCT 2278562 30 100.0 37 .............................. AAAATTTCAGATTATTATGTATTTAAGTCGTTACTTA 2278495 30 100.0 37 .............................. ATGTACTGCAGCTACATACAGATGATATTTTTAATGA 2278428 30 100.0 36 .............................. TTTAAGTACGATAAGAAATAATTATAATAAGAATCT 2278362 30 100.0 36 .............................. TGTGCTACTATAATAATCATCAAGTACCAGAAAATC 2278296 30 100.0 37 .............................. ATGTACTGCAGCTACATACAGATGATATTTTTAATGA 2278229 30 100.0 35 .............................. TATGCAATAAATCATCAAACTATTTGAGTTTTCAG 2278164 30 100.0 36 .............................. TGTACTGCAGCTACATACAGATGATATTTTTAATGA 2278098 30 100.0 36 .............................. AAATTTCAGATTATTATGTATTTAAGTCGTTACTTA 2278032 30 100.0 36 .............................. GGATGTCGAAATAAAAGACATCTCATGCCAAATCGA 2277966 30 100.0 37 .............................. TGGCTTCCTTCTGCGTAGTCCTTTGCGCCGATTCCGG 2277899 30 100.0 35 .............................. TTTCTTTAATGTAAGTCTTAAAGACTGTTAAAATT 2277834 30 100.0 36 .............................. CTTTTTGAGCATTATCTTAAACACTATGTAGACAGT 2277768 30 100.0 36 .............................. AAATTTCAGATTATTATGTATTTAAGTCGTTACTTA 2277702 30 100.0 35 .............................. AGCGCGTCAAAGTGTCGCGGCAAACCCTATCCAAG 2277637 30 100.0 37 .............................. AAAATTTCAGATTATTATGTATTTAAGTCGTTACTTA 2277570 30 100.0 36 .............................. GGGAAAAGAGACGATATGAGATAGCCTGCGCGGCGA 2277504 30 100.0 34 .............................. TGAAGAAATTAACCCCGAAGATATTACATCGACA 2277440 30 100.0 36 .............................. GCCGCGAAGGCGCGCGTCTATAACGTCGAGGTCTCG 2277374 30 100.0 35 .............................. CGACCTGTCAAATTTGAAAGTGTTCGGTCTGCAGA 2277309 30 100.0 37 .............................. ACCTCTCCGAGGGATCGGGCGCCCTTGTCGCCCTGCA 2277242 30 100.0 36 .............................. GAGCGCAAAACTGCGCCCATTAACTTTTACCCATGC 2277176 30 100.0 37 .............................. AGCGCGTAAATGTCGATAGTATCCAATACGCGATTCG 2277109 30 100.0 35 .............................. CAGCACAGCCGTAACCAAAAGCAAAAGGAATATGG 2277044 30 100.0 36 .............................. ATAACATGAAACTAAGATTATTCGCCGTCATCACGA 2276978 30 100.0 36 .............................. ACGATCCGATTCTTTTCTATATACCGCTCCAAACTA 2276912 30 100.0 35 .............................. AAAACTATTATGAAGAGTTTAATATTCGCCGTTGC 2276847 30 100.0 37 .............................. TGTAAAAAGGCAGCAGAGGAAAGAAATGCCTCATCAG 2276780 30 100.0 36 .............................. TATAAAATTCTTCTTTCTCCCAATTAGGTGGTTCAA 2276714 30 100.0 36 .............................. AACGTTTTATGAAGGAAGAATCCTCTCTTACAATGC 2276648 30 100.0 36 .............................. AAAAATAATCAGCCCTCTCAAATTTGAGGGCTGAAA 2276582 30 100.0 36 .............................. CCTCATACATTCGATAGTATGAGCACAAGCCCCGTG 2276516 30 100.0 34 .............................. TGACATGCTTCTCTTCCCCTCTTCAATAGATTGA 2276452 30 100.0 37 .............................. ACAACGTCCGTAGCTGCTCCACCGACAAGCTGCGCTT 2276385 30 100.0 36 .............................. GTGTTTGCACCATTATTCCCGGAGTTGTCGATATAT 2276319 30 100.0 37 .............................. TGAAATTCTTAGAGTAAGACATAAATGCTTGATTATA 2276252 30 100.0 35 .............................. CTATAGCCCTATGTGATTCAGGAACCGATCTGCTA 2276187 30 100.0 35 .............................. AAGAACTCAGGGCAAAAGCCCGCACCATGAAAACA 2276122 30 100.0 35 .............................. CAAAAAGGTCGAGATATATTCAGCTTCCCAAGCTG 2276057 30 100.0 36 .............................. CAGCATGGTCTCCTTCTCCTGAGGATGTAGAGGAGA 2275991 30 100.0 36 .............................. TCATATCTATTCCTCTTCTTTATAGGTTCCTAATTT 2275925 30 100.0 37 .............................. ATTGAGGGCTAAAACTTTTTATAGAAGCAGCGTTACT 2275858 30 100.0 36 .............................. CGAAAAACATCGATTCTTTATTGTAATACCAAAATT 2275792 30 100.0 36 .............................. GTTAGCAGATGAAGATGATTTCTATAACGTAATAAA 2275726 30 100.0 36 .............................. TTTACGACACATATAAACTCTATACAGATGATGTGT 2275660 30 100.0 35 .............................. CGTATTCGCTCGCAATCAGAAAGAAGCAAAAGAAA 2275595 30 100.0 34 .............................. GTGCGGTGGATAAACTCCTTTTTGATCATTTCGT 2275531 30 100.0 37 .............................. GGTAAGCCGAATAGGCAGAAATTACCTGTATAGCCTC 2275464 30 100.0 35 .............................. TATATTAAATCCCTCCTCTTTGAGGGTCTTTATAT 2275399 30 100.0 36 .............................. AGTGTATCTTTTTCTTGCAGCATACCGATGAGCTTT 2275333 30 100.0 36 .............................. TTACAGCGGTAGAGTTTTATAATCTACGTTTAAGTT 2275267 30 100.0 37 .............................. CTAAATTTCCTTCCTTATCCATCTTAATCCAGTCTGT 2275200 30 100.0 35 .............................. AAGAATTCCAAAAAGACTTTTACAGATTTGCAGTT 2275135 30 100.0 37 .............................. TTTGCTCTTAATCAGATTGATATTAACTCCATTATAG 2275068 30 100.0 34 .............................. AATCTTTGTATTAGCTCAACCGAAAGTTCAAGTT 2275004 30 100.0 37 .............................. TACACAAACAAACAAAACTTCGCTCCTACAGAATGCT 2274937 30 100.0 36 .............................. CTTTGAGAACTCTGTGAAAGAGGTTATCGAGTCTTA 2274871 30 100.0 34 .............................. TTTGCACTGTCTGAAGCTCTTCATATGTCTATCA 2274807 30 100.0 37 .............................. TTTTCTTGAATAAGTTGGAAGTATTGTAGATTTCTTA 2274740 30 100.0 36 .............................. GGTGGAATCACACTTATTCCGCCAGTTAGTGAACCT 2274674 30 100.0 34 .............................. TAGATGTAAAACATCGCTATTTTGATAATCCCTT 2274610 30 100.0 37 .............................. TACTAAATTTAGAAGTAGATTTATCTGAGTTTAAGAA 2274543 30 100.0 36 .............................. TCAGACATAAAATAAAAGTTTAACAAAACAACAGTA 2274477 30 100.0 36 .............................. CAGATGGATTATCAGGAGCAGATCCACACACAAGAC 2274411 30 100.0 34 .............................. TTCCCGTTCGAGAGCTGAGAACTACATTACCTAT 2274347 30 100.0 36 .............................. GCAGCTGCCGGATCTACGTCTTTAATAAGGGAGTGT 2274281 30 100.0 36 .............................. AAGAAATATGATTTATAATAGATTTAATTACTACAT 2274215 30 100.0 37 .............................. ACAGCAGATATGGATCTAGAAAGTTTATAATCTTTCC 2274148 30 100.0 36 .............................. CATTTTCTATTACCCAGGGGTTTGTTACCTCCCTCA 2274082 30 100.0 36 .............................. AAGAAATAGAGAGGCTATTTAACCTACAAAACGATA 2274016 30 100.0 36 .............................. TATAAATTAAACTAGAATCTATAGAACTTATGCTTT 2273950 30 100.0 35 .............................. CGAGGTTCGCGTTTTATGGCATATGGGACACGTGG 2273885 30 100.0 38 .............................. GGGTATAGAAATGCCATATACTCACAAGCCTTTGTTGA 2273817 30 100.0 36 .............................. CGTACCCATCGAAGTATCCAGCCTCTTAGAGGCATA 2273751 30 100.0 35 .............................. CGCTGAGTATTACAACAAACTACGCGAACAATACG 2273686 30 100.0 34 .............................. AGCCTATTTATACATTCTCTCATGAGATGTTGAA 2273622 30 100.0 36 .............................. AAGGACAGTGAATATTATTGTCCTATATATCCTAGC 2273556 30 100.0 37 .............................. CAAATATACTCAATTTGCAACTATAGCATATCCTGTC 2273489 30 100.0 36 .............................. AAAGCAGATAGGGTTCTAAGCCCTATCTGCGCCCTC 2273423 30 100.0 36 .............................. AACCAGTCAATCTTTCTGAGCGTGAAGTTATCGTGA 2273357 30 100.0 36 .............................. TTCCACTCTCGAAGGTGTGCTGGAGAACTTCACATC 2273291 30 100.0 36 .............................. TTTTCTGAGTCTTACAATCATATCACCCGCTCTCAT 2273225 30 100.0 36 .............................. CCAGCCTCTTAGAGGCATATGGATACCAACCTGACT 2273159 30 100.0 35 .............................. TTGATGTAGTTATTCAAAAACTCCTCATCCTCCTT 2273094 30 100.0 36 .............................. TGATGTAGATCCTGGACTATCTCCTAAAGAATTATA 2273028 30 100.0 35 .............................. AACTTCAACTATCCAGTAGATATGAAGAGGTTGAT 2272963 30 100.0 36 .............................. AAGTTTGTTGATGCTACCTCAAGTGAAAAAGATAGG 2272897 30 100.0 39 .............................. TTTTCGATATACGAACGAATAAAAGATTCTAATTTTTTT 2272828 30 100.0 35 .............................. GAGAATATAACAGCATTAAGTTTCTCTTAGCACAA 2272763 30 100.0 35 .............................. ACCCGAAGTCAACGTACTTGAGACTCTATACCGTA 2272698 30 100.0 35 .............................. GTCCCCCCATTTCTACCGAGCCTTGAACCTTTAGA 2272633 30 100.0 35 .............................. GTCCCCCCATTTCTACCGAGCCTTGAACCTTTAGA 2272568 30 100.0 36 .............................. CTAACGTCTACAAAAATACATCGATGTTGTTGCAGA 2272502 30 100.0 37 .............................. TCTTAGCACAATGGTTATGCTATTGCAATAGTACAGA 2272435 30 100.0 35 .............................. TGAACATCAAGAAACAGGGAACATATCGATGCAAG 2272370 30 100.0 36 .............................. ACTATAAAAGAGGTTCCGATTGAACACGATTTTGAA 2272304 30 100.0 36 .............................. ACTATAAAAGAGGTTCCGATTGAACACGATTTTGAA 2272238 30 100.0 36 .............................. CTAGAAACTTACGAATTGTTTCTTTTTGTTCAGCAC 2272172 30 100.0 35 .............................. TAGAAACTTACGAATTGTTTCTTTTTGTTCAGCAC 2272107 30 100.0 36 .............................. ACTATAAAAGAGGTTCCGTTTGAACACGATTTTGAA 2272041 30 100.0 36 .............................. TCTATCTATACAGAACAACGAGAATATAATAGTATT 2271975 30 100.0 37 .............................. AAGTATTTATATACTTCTCAAATAAAGCTCGTTGTTC 2271908 30 100.0 36 .............................. ACTATAAAAGAGGTTCCGATTGAACACGATTTTGAA 2271842 30 100.0 36 .............................. TAGAAGATCTTTTTAGATTCTTTACTAAAGAAGATT 2271776 30 100.0 38 .............................. ATACTATAAAAGAGGTTCCGATTGAACACGATTTTGAA 2271708 30 100.0 35 .............................. TAGAAACTTACGAATTGTTTCTTTTTGTTCAGCAC 2271643 30 100.0 38 .............................. TTTCGATATACGAGCGAATAAAAGATTCTAATTTTTTT 2271575 30 100.0 35 .............................. GAAAAAATGCTTTTCTTCATCGTAATTCCCAAATT 2271510 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 162 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TCGGGAGATACCTCTTCCATCTTCAGTCCCAAGAATCGGGAAAAGGTGATTGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTTCGGAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAGTATTATGCTGTTTTTAATGCTCAAATATACGAAATAACTCCCTATTATACAATGAATTAACAAGCAAAATACACGCTAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGAGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAGGCTTGATGAATTTGCTCGAGTCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 4 2317016-2316828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024595.1 Porphyromonas gingivalis strain KCOM 3001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2317015 37 100.0 41 ..................................... CTATCAGACTATGGCATCGAAACATATGTTTACATGTATGT 2316937 37 100.0 36 ..................................... GACGGACAACGTCCCAACAGAATTGGCCGAAAAGTA 2316864 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 39 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : CCTGTCCCCTCCCCCGAAAACGACCGAACTTTCCTTTGCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCTGATTGCGGCGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCATGCCATAGAGCACAAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCATTCGTTCTAACCCTCGGTAATAAGT # Right flank : TACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGTTGATTATATCTCATTGATATACAATGAGATTACCTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAAGAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATATGTGATTCGATTTTTTTCGAAAAACTAAACCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //