Array 1 74399-71932 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFB01000002.1 Streptomyces sp. DH-12 scaffold2_size102980, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74398 29 100.0 32 ............................. CTGACGGATGCCTCGGGGCTCACCGGCTGGAT 74337 29 96.6 32 ............................G GACAGCATCCCGGCGTTGATGATGGCTGACGA 74276 29 100.0 32 ............................. CCGAGCGATGTCCTGCCAGATGCTCCACAACG 74215 29 100.0 32 ............................. TTCGCCTTCAACCAGCCCTTCGGCCCTTCCTT 74154 29 100.0 32 ............................. GTCGACTTGCGGGCCTTGCGGGGGGCGGTCAG 74093 29 100.0 32 ............................. ACCCCCGGCGAGGCGCCCGCCACCAAGCCGTC 74032 29 100.0 32 ............................. TGCGCGTTACCGTCGGCGAGGGTCACCACCTC 73971 29 100.0 32 ............................. CGGACGTCTTCGCAAGGCTGCTGGAGGTGGCC 73910 29 100.0 32 ............................. ACGTCTTCCCACGTGACATAGACGCCCATGAG 73849 29 100.0 32 ............................. CTGTGGGGCAGCGTGATCGCCCTCACCGGGTG 73788 29 100.0 32 ............................. TCCGCCGGGTCCCATTCGTCGCCGAACATGGC 73727 29 100.0 32 ............................. CGGCAGTGGCTCAGCGTCGAGAACGAAGGCAA 73666 29 100.0 32 ............................. CACGGCGTGGCCGGCCCCGAGTTCGTCCGGCA 73605 29 100.0 32 ............................. ATGGCACCCGTGGGCCGGGGGTTGAAGATGAG 73544 29 100.0 32 ............................. GCGCCCCCCGCGACCAGGCCACCGCCGCCGAA 73483 29 100.0 32 ............................. AGGTAGGACTCCCATCCGCCGCACTGGATCTC 73422 29 100.0 32 ............................. GGTATCCCCGCGTGTCGCATCTGTCCGAGGTG 73361 29 100.0 32 ............................. GGGCCGGACAGGGCGGGTGCGGTGAACCAGCT 73300 29 100.0 32 ............................. CCGGCGTCGTCGCCGCGGACTCCGAAGCACAT 73239 29 100.0 32 ............................. CCGATCACCCGCGTACCGGGCAAACGGCCCAA 73178 29 100.0 32 ............................. CTCGGGGAACTCGCAGGGGAGCGGGTGCCGGT 73117 29 100.0 32 ............................. AGCACGTCGAACCGGTACTTCCACGAGGTGCT 73056 29 100.0 32 ............................. GCCGGCCAGGTGCCCGGGTCCTGGTGGTCGTT 72995 29 100.0 32 ............................. ACCGCGAGGGAGCCCTCCCGGGTCAGGACCGC 72934 29 100.0 32 ............................. GACGATCGCCGCGGTCAGCGGGCTCGTGACCG 72873 29 100.0 32 ............................. CCGAACCGGAAGGCACCTGACATGCCTGCGTA 72812 29 100.0 31 ............................. CCCGGCAGATGCCGTCCAAAGAGTGCGGATG 72752 29 100.0 32 ............................. ACGGCTGTGCGCAGTGCCCGGGCGCTGTCGGG 72691 29 100.0 32 ............................. TCTTCCAGGACGTGCGGCGACTGCCCGACGAA 72630 29 100.0 32 ............................. TCGATCGAGCGGGGCCCGTGAGGTCCGGCGAT 72569 29 100.0 32 ............................. GGCGCCCTGCTGGCGGCATCGGGTGCGCGTCC 72508 29 100.0 32 ............................. GTGCCGTCGGGCACGGTCTCGGCGAGCAGCGG 72447 28 96.6 32 .................-........... TGGACAGTGGCCCGGTTCGCGAGCGAGGCCAT 72387 29 100.0 32 ............................. GGCACGGCGCGTTCAAGATGCGGCTCCGGGGC 72326 29 96.6 32 .................A........... TTCACCACGGCGGCTCCGCCGGCGGTGAAGCG 72265 29 100.0 32 ............................. GAGAAGGGACGGTTCACCACCGTCGTTTACGT 72204 29 96.6 32 ............T................ ATCTGGCACACCGTGCGGATGGCGTCCACGAG 72143 29 93.1 32 ..AT......................... GACCCCGCCGCCATCCCCCAGTGGACCGGCCA 72082 29 86.2 32 ...........GGGT.............. ACGCCCGGGGTGCTGCCGGTCAGGTACCCCAC 72021 29 93.1 32 .C...............A........... ACGGGCAGTCCGGCGATCTCGCCGATCTGGCC 71960 29 93.1 0 ........................T..T. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 98.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCGGAGTGGCCTTTCCGATGTCGTGAACTCCGGCGAGCCACACGGCGAGGGCGCGTGCATCCAGCTCACCCTGCGGCAACGCCTCAGCGACCAGGCTCCGTACCCCCAAGGGAAGCCACTGATCCCACAGCAGGCCGGCCACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAACCAGCCGTCGCTGTCACGATCATGCTTGGCCCACACGGACCGAGCGGACTTCCCCAGCCGGCTCCACAGGCCCGTACGAGCACTCCCCCCAACGCTCATGAGGGATTGATACAGGAAAGATCGGCGCCCGTAGGTCAATATGAGCAGATAAGGCTGTTCGCGGGAGGAGCAGCGCCCTTGAGACGTACGATGATCGGCTCGTTCTTGATCCAACAGGAAGTGTCCTACGTGTGGATCGTTGCCTAATGTCCTACTTGCCGGAATCTGCAATAGTTGCTGAAAGTGCGCTTCATCCACGATAAACATGCAGGTCAAACAGT # Right flank : GTTTCCCCAGCGCGACCACAGTCCGGGCCGACAGACTGAGTGAACCTCGCACCTGCGGGGTAGCTTCTACCGCCCTATGAGCCAGCGTGGATAACTCAAACTGTGTACCCGGGGAATGACGGTTGCAGGTCGAGGAGGCCATCGGTCTGCTGACGAAGGTGCTGAACTCCAGAGAGCGGAAGATCGGGGTCCGGCTGTCAGCCAGAGGTAGCGGTTGGCGCCGCGTGAACAGGAGAGGAACCGTCCTGCGACGGAATACTGCCCACTGGCGAGTTGCCCGCGGTGGCCGTAGCGATTGTTTGTCCGCTCGTCCTCTTGCTTGCCGAACGTGACCGCTTTCGCGGTCGCTTCACCGGCTCGTCGGCACCCAGTTTCGCCAGTTCCGTCGCTGTCCAGCCTGCTGCTTCGGCGTCGACGTATGCCTTGCCGTACGACTCGTCGAGTTCGGCGAGCTGCTCCAGCAGTCTGCTCCGCTTGGCCAGGATCTCCACAAGCGGGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84121-86590 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFB01000002.1 Streptomyces sp. DH-12 scaffold2_size102980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84121 29 100.0 32 ............................. CGGCTCACGGTGGGACTCGGCGAGGCCGTCTA 84182 29 100.0 32 ............................. GGATAGTGGGGCGCCAGCCCCGGGCCTGTTCT 84243 29 100.0 32 ............................. TGCGGCGTGAAGTCAACGACGCGATCCGCTGG 84304 29 100.0 32 ............................. GTCTGAGTCGAGAGACTCAGGTCCATGGCTGC 84365 29 100.0 32 ............................. AAGTAGATCAAGCGGACGGCGCTCCCATGCCG 84426 29 100.0 32 ............................. TGCCCGTGTGGGGACCGACGGAGCCCGTCCCG 84487 29 100.0 32 ............................. CGCGGCGGGTCCCGTCACGAGAACCCTGACTC 84548 29 100.0 32 ............................. TCGACACCGAGATGCGGATCACCACCCGCATC 84609 29 100.0 32 ............................. CTCGCCCCGATCGGCCTGACCGGCGACGACAC 84670 29 100.0 32 ............................. AGGTCGGACATGGAGTTGACGAAGACGCGGCG 84731 29 100.0 32 ............................. AGGGGTCCTGGCCTGCGGCGGAGTTTCGTTCC 84792 29 100.0 32 ............................. AGCAGGAGCGACGACCTGAGCGGGCGCGGGAG 84853 29 100.0 32 ............................. ACCATCGGGTCGGGTGTGAGGTGCGGGCACAG 84914 29 100.0 32 ............................. GTGCAGCGCATCACGCCTCGGATAGCGATGCG 84975 29 100.0 32 ............................. AACCGTTCGATTCAACCCGTTCGCCCCGGTTC 85036 29 100.0 32 ............................. GTCAACCTCCGCAAGGGTCCGGGTACCTCCTA 85097 29 100.0 32 ............................. GGTCCCGGTCGGCTCGAGGAGGGCGGGAGGGG 85158 29 100.0 32 ............................. CGTGAACGGATCGCCCGGGAGACCGCCGAGCG 85219 29 100.0 32 ............................. GGCTATGGCTGCGATGAGGACGGCTTGGGTGA 85280 29 100.0 32 ............................. GGCTACCAGGACGTGGGCAAGGGCGTGCGCGT 85341 29 100.0 32 ............................. GATCCCGTCTTCCACGAGCTGCGCCGCAGCCT 85402 29 100.0 32 ............................. ATCGTGAGCCTTCGTCTGACTGGCGCCGTTGG 85463 29 100.0 32 ............................. GAGGTCTCCCCGTGGGCCACCGGGGTGGCGCA 85524 29 100.0 32 ............................. TCGCGCTCGCCGTTCGTGTCCACGCCGTAGCC 85585 29 100.0 32 ............................. CACCGGAGAGGGGGAGACGCTGAGTGGGGGGT 85646 29 100.0 32 ............................. CACAAGCTGATTGCGGGCCGCGAGCGCGTTCT 85707 29 100.0 33 ............................. ACATCGCTGCCGGATCCGTCGGGGCGCTCGTAG 85769 29 100.0 32 ............................. TCGAAATCGGAGCCGGCGTCGGCGCCCGGTTC 85830 29 100.0 32 ............................. GCGGCGGGGTCGTCGACTTCGACCAGGCGGCC 85891 29 100.0 32 ............................. ATCACAGAGAACATCGTCCTCGCCCGACTCAT 85952 29 100.0 32 ............................. CGGTCCGAGGTGACCGCCCTACTCCCCGACCT 86013 29 100.0 32 ............................. GCCACCGGGCCGCCTGGCACGCACTCACCCCC 86074 29 100.0 32 ............................. TGCTGATCCGGCATGCGCCGGGCGAGCGCCTC 86135 29 100.0 32 ............................. CATGCGGCTACGCAGGGGCGTCATGCTTGCAA 86196 29 100.0 32 ............................. CCCATCGAGATAGACCAGGTGGAGGACATCGT 86257 29 100.0 32 ............................. TACAGGCGTAGTGCGGCCCCGCCGTCGGGGGA 86318 29 100.0 33 ............................. CGCCGGTCCCGCCGCACCGATCGCAGGGCCGGG 86380 29 100.0 32 ............................. CGGCCGGACCGCCGGCCATACCGCCGGGCGCG 86441 29 100.0 32 ............................. ACCGCATGGTGCCTTTGGCACAGCCGCACCGC 86502 28 89.7 32 ...........C...........A.-... TCGATCGTCGAAAAGCGCGACGCGCTCGAAAA 86562 29 79.3 0 ............G.A....T....C.G.T | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGTCAACTACGACGGCCCCGACGAGGACTACGGAGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGGCTACGAGGCTTCCTCACACGCTGGCTGCTGGAAATCTCGGCAGGCGTGTTCGTGGGCAACCCCTCGGCCCGCATCCGCGACGTGCTCTGGGAAGAGGTCCAGCAGTACGCAGGCCAGGGCCGCGCGTTGCTGGCCCACACCACGAACAACGAACAGGGCTTCACCTTCCGCACCTACGACCATGCCTGGCACCCTGCCGACCACGAGGGCATCACCCTGATCCGTCGCCCCGACCCGAACGCGCCCTCACCTGGGCCTGCTCCCCGACAGAGTCCTCCCTCTGGCTGGAGCAGGGCTGCAAAACGCAGACGCTTCGGGAGAAGCTGACACGGATGGAGTCTCTTACGCCCTATATGCCGGAGTCTGAGAAAGTACTCGAAAACCGCTGCTGCACCAACTAAAACAGCAGGTCATCCAGT # Right flank : TCGGGACGGTCACCGTCGACGAGGTGAACACTGCTCCCCAGCTGGCTTCTCACCCGTCCGGTGGGAACCGCACCCAGCTTCGAGCCCGCCCTGTGACGATTCGTAAGACCGGCCGCCGCCCAACAGACACCATGGCTTCACGATCGGCGACTGAGACAACAGGGCGGACGCGGCCAGTAAGGACCACAGCTCAGCGTGCCCACCGGCGCCAGCAAGGACTCGGGTCGTTCGCCGTCCCAGGCAACCCGCTTCCTGTCAGCCGACACAGCACCGCTTGCCTTCCACAGAGGAAGGCAAGCGGTTGCCCAACCTGCTACTGGTCTCGCAGCTCGGCCAGCAGAGCCTCGTACTCGTCCGGGTGCTGCTCCCGCAGGACATCCATCCACACCCGGGCTCCCCGCGCGAACGTCTCGGGGCTCATCCTCTGGTGAAGATGGTGCACGCAGTAGAAGGCGTCGTCGTAGGGGAGTCGTTTCGGTTGCTTCGGGTGCGCTGCCTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18778-23391 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFB01000003.1 Streptomyces sp. DH-12 scaffold3_size28624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 18778 29 72.4 32 T....TT.......AC......GA.G... GCCACCAGTCGCCACGCCGTACAGGGCGAGGA T [18789] 18840 29 86.2 32 .C..CT..............A........ CCGTTCTCCGCGCCGGGCTGCAGGCCGAAGGC 18901 29 93.1 32 G........................C... GACCTGGCGGCCAAAACGGACGAAGTGGCCGC G [18916] 18963 29 89.7 39 ...T.T..............A........ GCGGCGCATCTCGCGTTCGGTCCACTCGTCATCTGCTTC 19031 28 82.8 32 .C..-A...........A.......A... GGGGCCTTTATCGCGCGCTTCGGCACGTCCGG 19091 29 93.1 32 ........................AC... CAGACGATCTTCGATCTGCTGGTTGCCCAGAC 19152 29 82.8 33 ........T.T....A.A.....A..... GTGACGCCAGGGAAGACCAGGTGGAGATACTCG 19214 29 96.6 32 ............G................ GCCTCGACATCGGGGGTGGGGTGGCCTGTCAG 19275 29 96.6 32 .........................C... GCCACCACCGCCGGAAGCAAGACGTTCCAGGA 19336 29 93.1 32 G..........G................. TACGGCACGCACCCGTCGGAACCGAAGGCCCG 19397 29 96.6 32 ...T......................... CGCAACTGGTCGCGATCGCCGTCGTGGCGGGC 19458 29 93.1 32 .......T...G................. GTCACGGCCGGCGGCGCCGACCGGGCCAAGTC 19519 29 93.1 32 G..........G................. TCGTCGTAGAGTGCGCGGGCGTCGCGACGGGT 19580 29 96.6 32 .C........................... GAGACCCCGGACGAGTACCAGGACGGCCAGAT 19641 28 93.1 32 ............-.............T.. GGCATCGCCACGCGAATGCTGGTCGACTACGA 19701 29 86.2 32 ..A.....T....T..........T.... GACTACACCGCGCTGTTCGCGGAGGAGTGCGT 19762 29 93.1 32 ....................A....C... CCGAAGTTTCTCGCCGACCTGGGCAAGCTGAA 19823 29 96.6 32 ................T............ GTCTGGGCCTACGCACAGTCCATCCCGGACGG 19884 29 89.7 32 ...............A...A.....G... GTGATCTCGACCTCGCCGAGGGCGGTGTACTC 19945 29 93.1 32 ....................A.....T.. GTAAGCGGGCCGCCGCCCGGGTTCGCGCCCCG 20006 29 93.1 32 ...........G........A........ ACGTCAAGGACGCGTTCCAGCTCGAGGAGCGC 20067 29 96.6 32 .................A........... ATGAGTCCGCCGAGCCGCTGGCCGTCGGCGTT 20128 29 89.7 32 T.............T...C.......... CGGGCTCGTGGCCGGCATCCGCAGCGCCGCTT 20189 29 96.6 32 ......T...................... GACTGAGGGTCGAGCCTGAGCCCAGGGAGGAT 20250 29 93.1 31 ............A....A........... CAGACGGCCGCCGCTGGCCCTGCCCCGACGT T [20262] 20311 29 86.2 31 ....C....A.......A.......G... CCAGCGAAGTGCGGTGCTTCCGTGGGATGCT G [20319] 20372 29 96.6 32 ..............T.............. CACAAGAGGGTCGTGGCGGTCAGGTTGCCGCG 20433 29 89.7 32 ...........GT....A........... GCCCAGAGGGCTGGCGGGATGCTGGCGGCGAC 20494 29 96.6 32 ........T.................... ATTTGCGACGCGTAGAAAGCCTGCGCCGTGCC 20555 29 93.1 32 .............T.........A..... GCGGTGCCGTCCATCAGGTCGGCCCGCACAGT 20616 29 100.0 32 ............................. AAGATCCCGCGTTGGTACGGCATCGGAAACGG 20677 29 100.0 32 ............................. TCCGACGGCCCGCCGAACACGCCTCGCGTGCC 20738 29 96.6 32 .........................A... TCGTCGCCACCGTCTGCGGCGATGTCGACGCC 20799 29 93.1 32 .....T...................C... CCGCTGTTCTGGTTCGGCGTCCTGGCGGCCGC 20860 29 93.1 32 ...........G.............C... CGGATGAACCCCAGGCCGACCTTGCGGGCCAG 20921 29 93.1 32 ..................A......C... GTCGCGCGCTCATGGATGGAGGGTCACGGAGA 20982 29 96.6 32 ...........G................. TTGTCCGAGCTCGTGGTCCGGGAGGACAACAC 21043 28 93.1 32 .................-A.......... AGGTACTTGAGAGCCGCGCTCTGCGCCTTGTT 21103 29 93.1 32 ...T.....................C... GGCCTCCAGCTCGACCTCAGCGTGTCCCGTGA 21164 29 100.0 32 ............................. GCTGCGGGCGGTCGCGGGGTGAGAGACCATGG 21225 29 93.1 32 .................A..A........ AAGGCTGCCAAGAACGGCACTCTCCCCAAGGG 21286 29 93.1 32 ...........GT................ TGGCCGCAGGCCTGCGTCAGTTGCCTGACCTT 21347 29 96.6 32 ...................A......... TGCCCACGGGTCCAAGCCGCCGGGTTCGCCGG 21408 29 93.1 32 ...........G.............C... GAGCCGCAGCGGGACCGGGAGGCCCGGCAGGC 21469 29 89.7 31 G..T........................G TCTCGTGGCTCAGCTTGAACAGGCCGTCGTC C [21494] 21530 29 93.1 32 ...........G.....A........... AGCCCGTTCGGGCTCCGCAGGGTGAGGGTGCA 21591 29 82.8 32 G....T.....GT.......A........ GACGAGGTTCGCATCATCGTCGGCCACCTGGC 21652 29 82.8 32 G..........GTT..........A.... TTCGCGGCATTGATGCGCCGCTTGTTCGACTC 21713 29 96.6 32 A............................ CAGACCGAGTGGCTGATCGACGAGGAGATCGT 21774 29 93.1 32 ...........G..T.............. GTGTGCTTTCTCATGGGAGAGGTTGCGGCCCG 21835 29 96.6 32 .........................C... GAGGGCGGCCTCGGCGCGCTCAGCCCGCCCGT CG [21843] 21898 29 93.1 32 ...........G..T.............. GCCCAACCGACCACGGTGATCGGAGTCGAGTG 21959 29 96.6 32 ..............T.............. AAGCACCTGGCGTACGCCGACGGCGGTATCCG 22020 29 100.0 32 ............................. GACCTCCCCGGCCAAACCCTGCCCGCCGTCGA 22081 29 96.6 32 .............T............... GGCATCCGCATGTACAGCGAGCACGCCGACTT 22142 29 96.6 31 .................A........... GCCCGCCGCGGGGACGTGGAGCTCATCCTCT 22202 29 96.6 32 ...........G................. TTCGCGATGGCTGGCGACGACAACTTCGCGGG 22263 29 89.7 32 G..........G.....A........... ACGTACCGGTTGGGCCACTTCGGTCTGTTCCA 22324 29 93.1 32 ...........C.............C... CGCTTCGGCGGCTTCATGTACAACCCGGATGC 22385 29 96.6 32 ..A.......................... CAGTCGATCCGTGAAGTCGTCGACCAGGTCCT 22446 29 96.6 32 .........................C... TACCTCGTGCCGTACCCGTCGGTGTCCTCCTC 22507 29 96.6 32 ............T................ GTCGGTTACCGGTGCCTGGCCGGGGCCGAGGA 22568 29 100.0 32 ............................. GGCCCGGTCCGCAAGTGCCCGCCCTGCAAGTC 22629 29 93.1 32 ...........G..T.............. GCCTGTGCGTCGTATCCGGCCATCTGCACGGC G [22633] 22691 29 89.7 32 ..A..........T......A........ GTCACCATCGAGAACAACGATCGTGTTCGTCA 22752 29 93.1 32 ............T....A........... GACGTGGCTCGGGAGACCGAGGCTCATGTCCA 22813 29 96.6 32 ...........C................. TTGTACGCTCGCCGTCCCACGCAGCGCTTGCC 22874 29 93.1 32 .........A....T.............. GCCACACGGTTCATGGTGGTCTGGGTCTGCTG 22935 29 96.6 33 .....T....................... TTGACTGTGGGCCAGCCACAGAATCCGCCACTG 22997 29 86.2 32 G.......T..GT................ CAGGCGTACGGCTCCTCAGCGCTGTCCGGGTG 23058 29 93.1 32 G...................A........ GTGTCCGGCGTCGTCTCCGTCGGTACCGGCGA 23119 29 89.7 32 G........A.G................. AGGTCGCCGGGCTCGTGCACGTTGCCTTCAAC 23180 29 89.7 32 G................A.......C... GAAGTCGAGTTCGCGGAGCAGGACTTCCAGGC 23241 29 100.0 32 ............................. GCCTACCTCATCAACCCCGTCGACCTCGAGGA 23302 29 93.1 32 .....T........T.............. CGGCCGTTCTCGTAGTTGGCCAGCACGCTGCG 23363 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 76 29 93.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACACCCTGGCTTTCCGCACAGTCGTCAACCCCACGCACAGCCGACCCTCCGGACCGCCGGCCCCGGACCGCTCCCGTGGACGGCGCACCGCTCACACCCGCCCCGACCACGTGAAGAACTGGTTCGTGCGCCGTCTCCAGCCGCCCGGCGAGCCGCGCAAGGCCCCCGACAGCGTCGTCCGTATCGGTGCCACCGCCGAACCGGAGACTTTGGCAGTGCGGATGCTGCCCACCGTCACCAGCCCCAGCACCCATAAGGCCCTGCGCATAGTCCGCGCGGAAGTCCGGGGCACCCTCACGGTCACGGACCCCGCCGCCCTGGTCGACGCGATGACTCAAGGCATCGGACCCGGCCGGGCATACGGCTGCGGACTGCTGTTGACCAGGTGAACGTCCGCACCCCCTGCCATGAGTTTCGGACCCCTTTCGCAGCACGCGCGCGGCTGGACGGTCCCACGGCGGCCGTGTCCGTGAACACGTGGTGCCGCCGGCGAGGCCCTC # Right flank : CAGGTACCAGGGGAACCGGTGGCCGGCCTCGCCGCTGCCATCGGCGGCCGGCCGCTGGAGTCCGGGCAGAAGCCACCGGCCCGCAGCGACACCGGCGGCACGACGGCACCCCCGGCGCAACGGGCGCGCCGCACACCACCGCTGACCCGGTGGTCGCACTACGGCGACACGGGGCGGCCCACCCTGCTGCTCCCCCCGCTCAACTGCGACGAACGGGCGTGGACCCAGCAGATCCCGGCCCTGCTCCGGGAGGGACGTGCGATCCACGTCCCGGAGTATCCGGGGCACGGGGACGTCCCCTTCGACGAGGAGGGCTTCTCCTTCGAGGCGCTCGCAGACGAGGTGGCCGGCTTCCTGCGGGACACCGTTGGCGGCCCGGCCGACCTGGTCGGCTGGTCCCTCGGCGGTTGCGTCGCGACACTGACCGCCCTGCGGCACCCGGAGCACGTGGCCTCGCTGACACTCGTCAGCTGCGCGCCCCGCTACGGCGAGGACGCCTT # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [65-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //