Array 1 57342-56272 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007543.1 Synechocystis sp. PCC 6714 plasmid pSYLA, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 57341 36 100.0 41 .................................... TACCGACCGGGCGGGCAGTGCAAGCGCTGTTTTTAGCACGG 57264 36 100.0 39 .................................... CGCAAAAAGGTTGTAAGGAGCAGCATGGATGCCAAACAT 57189 36 100.0 47 .................................... CAGGAAATAGATAACTTCCTTGCCGTTGGGCTGATACAGCCCGCTGT 57106 36 100.0 39 .................................... AAAGGTTGTTCTTGAGGCGATTCCAGCCACACAACCAAT 57031 36 100.0 38 .................................... ATGTGCCGCCAGCCAGTCGATCTGTTCGCTGCAATGCA 56957 36 100.0 35 .................................... TAAACAAACAGAAGATTGAGGAAGTCCATGTTGTT 56886 36 100.0 35 .................................... TAAACAAACAGAAGATTGAGGAAGTCCATGTTGTT 56815 36 100.0 37 .................................... TTGCGTAGTTCTTTTATTGATTTTTTGTCTAAAGAAG 56742 36 100.0 36 .................................... GATAAACGCCGGTGACAATTTAGTTATAAAGAAGGA 56670 36 100.0 35 .................................... CTGATGAAGTCTTGGGGAGTAAATGATCCCAACTC 56599 36 100.0 37 .................................... GTAGTCGCCCACGGCACTACTATGTTCACATTCCGTA 56526 36 100.0 40 .................................... CCGTCTTCTAGGAATATTCGATCTTTCTTTTTTACTTTGA 56450 36 100.0 35 .................................... TAGAGATTGAACAAAGGTTAATGTAGTCATGATTC 56379 36 100.0 36 .................................... AGTTCTTAATACTTTTTTTAGAATTCCAGCTTCAGT 56307 36 88.9 0 .....G..................C.....TA.... | ========== ====== ====== ====== ==================================== =============================================== ================== 15 36 99.3 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Left flank : TTAATTCGCTAATTGATGTTTCTCTATGTTATTGCCTACGATATTCCTGATGATCGCCGTCGTAAAAAGATGGCCGATTTATTGGAAGGTTATGGCCAAAGGGTGCAATATTCTGTATTTGAATGTACGTTATCTAAGTCTAAGTTTAATGAATTGCAAAAGCGTCTCCGCAAAATTTATCAATCGGAGGAAGATAGTTTGCGTTTTTATCCTTTGTCTGGGCATACCCTCACCCAGGTTGATATTTGGGGAGAACCTCCATTAACTAAGCCCCCCGGTTCAGTCATTGTCTAAAATCTATGCTGATTATTGGTGTACCATTGCGAGGCTGTTGGAAAATCGCTGTAATGTCCGTTTTTCGCTGCGAGCCTCGATGGTTTGGTGTATAAGGGTTTCAGCCGCTATTTTTACATTGAGCTTTTCCGATTATAGTCAGTTTTTGCTGAGCCTCGCAAATGAGGATTGGATGCCTTGTCCCGTAAGGCTTTAAAATGGAGACA # Right flank : TCGCTACGGTAATAATTGCCAGCAAGACTCCCTTGGATCACCAGGAGTATACGGTGTTTTTAAAATTCGTACTGAATAAAAAATCAAGAAAAGGGGTTGTCTAATGCCATGCTAAAAAGCAGATGCTGAGTTAAGTCATCCACCATGCAACTAAAACACTGGCAGTCTCAAAAACAGGAGCAAAAAAAGAGTGCAGGGGCTCCCAAAAAGGTGCGGCGACAAAAAGCCCGCCTCCAAGCCCTGCGGAAAAAGCTCCATTCTTCCCGTGCTCGGAACCAGCCGTAGTAATCCATTCACCAGAACTCGCAATTTTTCACGGAGAAGCAGACAGACATGAATAGTATTTTCACCATTAACCCCTATTGGACCGGAAGCACCTGGGCGTTTGATGCAGCCGAAGTGGGTCTATTGGGGGAACCCTTTGTTTCCGGGGCTGACGCCATTTTGAGCGCCATTGTCCAGAGGGAATTGACATTGGAGACAGAACAAGGCAGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 51055-51877 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007544.1 Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 51055 36 100.0 36 .................................... TTACAAATGGAACTAACACTTGTTTTGGATCGAAGT 51127 36 100.0 36 .................................... ACCTGGAATTTGGAGCCACCCAAACCCAGCGGGGGG 51199 36 100.0 35 .................................... TTTATCACCGTGTCCCCAATCTGGATATTTTGTGT 51270 36 100.0 35 .................................... TAACAATTACAGAAACTTCAAGCGGATTTGCTATA 51341 36 100.0 35 .................................... ACCGTAAGATTGGCAGATATTATCGTCCCTGATAT 51412 36 100.0 37 .................................... CATACCGTGCATCAGGATAATATCACAATGCTTTCTG 51485 36 100.0 35 .................................... GCAGATCTGGACATTGACACGACCAGGGAAACCCT 51556 36 97.2 35 ....................A............... GGATTTGCTCATGCCAATTGTGGGGGATTTTGCCC 51627 36 100.0 35 .................................... GCGTGGCGGGCGGGGCAATTGTTAGTGCGATCGCC 51698 36 100.0 36 .................................... TACGTTTTTCCGTCCCAGGCAACATAGCAGGCATGG 51770 36 100.0 36 .................................... CTTGGTTTGATGAGTCCACCGGCTGGGTTAAAGGTA 51842 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 99.8 36 GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : GTCCTAAACGCTGGCGTAAAGCTTACAAACTACTTGAGGGGTATGGCGATCGCCTACAATACTCCATTTTTCGCTGTTGGCTTAGTCAACGAATGCGTGAAAAGTTGCGCTGGGAGTTGGAAAAGATTCTGACTCTTGAGGATGACCTAATTTTAATTAGGCTGTCAGCTCAATGTGTCAAGGATTTACCAAAATATAATCGCCAAAATACTTGGATATTAGAAGGGGGTGGCTTTCGGGTAATTTGACTAAGCGCAGAGATCTGTCTTTGTCTTCTCACGAATTTTGTCCAAGGAGCCTCAATGCTTGATCTGATAAGCAATTGAAGTCTTTCCCCCATCAGTTAGATCCTTGTAAATGCTGTATCCTTTGTTCTGTCTAAATTGTGAAAATCTCTCATACTCTATTTTCCTTGACTTGTCTTTTTTGAAATTTGAGTTGTTGAGCACCTTGTAAAATCCTTGTAGAAGGTACGCATGGTAATCTTTTTGAAAGTCGCC # Right flank : CCTGTTGGCGTGGATACGGTTATTCCCTAGCCGTGAACCTTATCGTTGGGATTCCCTCACGAGCATTAGGCGATCGCCAGCATAATCTAGTCCCCGCGCAGCTCCGCAGGCAAAGTTAAAATAATGTTAATGAGTGCCCTGCCCATCTCTACGAGATCGTTCCTTTCCCCACTCCAACCTGCAAACATGGCCCAAATCACCCTAGACCTCCCCGACGAACTCCTAGAGCAAATAGTACAAGCAGGAGAAAACCCCTCAGAGTGGTTACGCCATCGCCTACCCGACATTCTCAAACCGGTTCCCCCCTTACCTGCCCACCTCTATCGCCACATTCTGAACTTCATCGCTAGCAATCCTACTCCCCAACAAATCTCAGACTTCAGACCCACCCCAGAAATGCAGGAACGCTTAAGAAACCTCTTGAATCGAGAAGAAAACCTGACCCCCTCAGAACAGGCCGAACTTGAGGAGTATGAACGAATCGAACATCTTGTCGTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 1018757-1018130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007542.1 Synechocystis sp. PCC 6714 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1018756 36 100.0 43 .................................... TTCTACCTTAGATCTACCCTGGAACTGTGTAGCTCGACTGCTT 1018677 36 100.0 40 .................................... CTGAACCATCTGCCCATTGCCACAACATGGCTCAAAAATC 1018601 36 100.0 37 .................................... GTGGTGTACGGCTTAAACCCCTGGTAGAATTTCCGCA 1018528 36 100.0 34 .................................... CACAATTGAGCTTTTACGCTCGATTGCCTCTGCG 1018458 36 100.0 35 .................................... ATATCATTTTGACTGCTAGTGGTGCTTTAAGCACG 1018387 36 100.0 32 .................................... GTAAGGGATTAATCTTTGTCCCGTAAGTTAAT 1018319 36 100.0 38 .................................... GTCTGGCGCGAGAGTGAAGACCTCTAACGTACTCCCTA 1018245 36 97.2 44 .............................C...... AGCAAGGGTTACAAATGGTCAAATCTTAATTAATAGTTAAGAAA 1018165 36 80.6 0 A....T.A..G.A........A........A..... | ========== ====== ====== ====== ==================================== ============================================ ================== 9 36 97.5 38 CCCTACCGATTGGATTAAATCGGATTAGTTGGAAAC # Left flank : TAAAGGCTATGAGCCTTATCGTATTCGTTGATGCTTTATATCATTTGTTATGATATTCCCGATGATCGCCGTCGTAAAAAGGTGGCAGATTTGTTGGAAGGTTACGGTGTTCGGGTGCAATATTCGGTGTTTGAGTGTTACCTCTCTGCTAAAAAACTGAAGGAGTTACAACGTAGGCTCCGCAAACAATTTAATCAGAATGAAGATAGCATACGTTTTTATCCATTGTCCCCATCTATGCTTTCCCAGACTATGGTTTGGGGGTCACCTCCTCTATCCACGCCTTCATCTTCGGTAATTATTTAGCCCAATTTTTCCCTGCGAGGACTCCAATGATTGACCTGAAACCCACTGATTACTTTACAGCCCTCGATGTCTTGCCCTATAAGGGTTTTAATGCTGTTGGATTGACGATGGAGCTGAAATGAGACAGTATAAATGTGTAGCCCTCGCAAACTGTCTCTGGAGTCCGCTCTGGATGCAAGTTTGAAAGGGTAACT # Right flank : CTCATGTTTGATCAATAGTCAGATGAGGTTTTTACTTATTTTTATAAACATTAGTTCGCATTGTGCAGTGCCTTAGGAGCATTGTAATAATTCAAATCTTGGAAAATTGAGTCCTCTAATTTATCTTTGTCGAAGTTTAGGATGTTAACTCAAGCCAGTGGGGACAAAGATAATGGAGTAGAAGATGTTCGTACACAAGCAGTAAATGTCCTAAATTTTGGTTTTCCACTGCCCTGACCTGTTCTTCGACTGCCCGGAGATTGAAAGGCTTAGTTTTGGTGCCGACGTAAAGGCCAACCCCCACAGGGACATAATCGAAAGCACTGTCAATGCCGGAATTAGCAACGGCTTTTTGGACTTCCCCCGCAGTAGCACGGTAAACCTGGACAACCACTTCATCTAGAGGAGTGGAGCATCAAGGGAGTAAATTACGAGCGGGCAGGGGGATGTAGTACCGTAGGCAATTTCCGTAAATCCCCTGTGTGTTCTAGTTCTTGGAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGATTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //