Array 1 25931-21240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013695.1 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 25930 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 25868 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 25809 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 25749 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 25687 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 25627 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 25567 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 25509 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 25446 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 25388 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 25329 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 25269 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 25210 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 25152 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 25093 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 25033 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 24975 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 24913 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 24853 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 24795 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 24737 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 24674 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 24616 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 24556 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 24493 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 24432 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 24375 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 24315 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 24257 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 24195 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 24137 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 24077 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 24019 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 23956 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 23893 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 23832 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 23774 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 23713 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 23653 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 23591 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 23531 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 23472 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 23414 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 23354 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 23294 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 23235 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 23174 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 23115 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 23052 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 22993 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 22936 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 22878 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 22819 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 22759 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 22700 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 22642 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 22581 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 22520 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 22461 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 22402 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 22344 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 22285 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 22226 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 22167 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 22105 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 22045 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 21985 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 21926 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 21867 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 21806 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 21743 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 21682 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21623 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 21564 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 21504 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 21444 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 21383 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 21323 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 21263 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 79 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : ACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 38298-46465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013695.1 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 38298 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 38357 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 38415 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 38477 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 38538 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 38600 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 38662 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 38718 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 38781 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 38839 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 38900 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 38966 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 39026 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 39089 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 39148 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 39208 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 39267 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 39326 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 39386 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 39447 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 39508 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 39567 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 39625 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 39687 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 39746 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 39804 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 39863 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 39923 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 39982 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 40041 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 40100 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 40160 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 40220 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 40280 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 40340 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 40398 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 40456 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 40514 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 40573 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 40632 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 40693 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 40751 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 40810 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 40869 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 40928 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 40987 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 41047 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 41110 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 41169 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 41227 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 41284 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 41348 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 41406 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 41464 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 41522 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 41580 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 41639 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 41698 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 41759 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 41820 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 41880 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 41939 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 41999 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 42059 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 42124 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 42184 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 42244 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 42302 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 42361 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 42419 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 42478 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 42538 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 42598 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 42660 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 42722 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 42781 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 42839 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 42898 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 42960 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 43019 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 43078 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 43142 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 43200 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 43261 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 43321 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 43382 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 43440 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 43500 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 43561 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 43621 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 43680 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 43738 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 43799 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 43859 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 43920 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 43978 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 44039 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 44096 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 44155 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 44217 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 44278 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 44339 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 44399 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 44458 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 44518 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 44581 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 44640 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 44699 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 44762 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 44824 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 44882 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 44941 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 45000 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 45060 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 45121 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 45183 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 45244 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 45305 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 45366 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 45427 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 45485 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 45544 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 45605 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 45665 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 45726 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 45785 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 45844 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 45904 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 45963 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 46024 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 46082 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 46141 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 46202 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 46263 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 46323 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 46382 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 46442 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 137 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : CTCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 2109938-2110595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013695.1 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 2109938 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 2110002 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 2110069 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 2110133 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 2110195 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 2110258 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 2110319 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 2110385 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 2110447 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 2110510 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 2110571 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : ATAAGATAAGGGGAACAGAGAGCGGAAGGAGAAAAGAGAGGATAGTCCAACCTGCAAAGAAATGTATCAACTGCGGATTCTTGCCCTACTGCAATCCCCTAAGGCAAGGGAGTCTTTATGTAAGGGAGATATAGGTGTTGTATTGAAAACTTTTCAGTATGTCAGACCTGTTAAATTTAGGTCAAATACGTGGGTTTATAAGTCTATTTATAAATATTTTGATAAACATATTTTGAAAAATAATTACAGATTGCCTGAGATGGCTGAAGAACTTTTTAAGTTTACGTTACTAAAAACATAATTGTAGGTTTGATGAATCGCACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATNTTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : GACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2149981-2150258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013695.1 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 2149981 25 100.0 37 ......................... CATATCATCATCTCTCATCATCTGCCTGCAACGTATC 2150043 25 100.0 36 ......................... TCACATTCATCCCTATAGACATTTATTGAAAACGAG 2150104 25 100.0 41 ......................... TTTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 2150170 25 100.0 39 ......................... TAAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 2150234 25 76.0 0 T..A.G.........AA......G. | ========== ====== ====== ====== ========================= ========================================= ================== 5 25 95.2 38 GAAGAATCCCATAAGGGATTGAAAG # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : GCCGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //