Array 1 559164-558299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIQ010000001.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_1_646771, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================================================================================================= ================== 559163 31 100.0 125 ............................... GCAACAGCCATTTTCCATCATCTCCCCTGTTTACATTTTTTCTAATGTGTCATAATAATAAGAGTAGCGGGAAGGACAGTCCGCCAACTGCCCGACCCTTAACCTTAACCTTACCAGTTCACCGC 559007 31 100.0 38 ............................... CAACTATACGCCACCTTCCCGCTTACGGGCGCTCAGAG 558938 31 100.0 38 ............................... AATGGCGGCGGCATTACAGCGGGGAAGATGGAAGGGAC 558869 31 100.0 34 ............................... TCGCGCTTTTCTTCATGGTGGTCTAAGCTTCGGC 558804 31 100.0 41 ............................... TGGGTACGAAGTCACTATTTACCCAAACGCAGCTTGGAAAA 558732 31 100.0 36 ............................... ATAACTTTCGGTTTGTTCTGTTGGAAGTCCCGTCAC 558665 31 100.0 37 ............................... CCATTACGATTTTACGAAGCTTCTGCGTGTTCACGGG 558597 31 100.0 36 ............................... GTCATATCCCTTGTTTCTACCGTGTGCTTCTCGTTC 558530 31 100.0 35 ............................... GGATGAAAGCGGAGAGGAACCCACAGTCGAGCTGA 558464 31 100.0 35 ............................... ATAGGATGGCCTTTCTTTGTTTTGATGCGCTTGAC 558398 31 100.0 38 ............................... TCACGGCAGGGGGACCCCTTCCCCAAAACTTTATGAGG 558329 31 96.8 0 .....................A......... | ========== ====== ====== ====== =============================== ============================================================================================================================= ================== 12 31 99.7 45 GTTTTAATTGAATCCATAGTGGAATTGAAAG # Left flank : AGATTGACTTCTCGATCGAGGTAAAATTTGGCTGAAATACGTATGATTTCACCTCCATATGCGATAAGAAGAATAAGTAATGTTACTTACTATTGACACAAGTTAAATTTATCAGAATTCAATTATGGGGTCAAGTACTTTCTATTTTGCTTTCCAATTTATATCTTTTTTAACATAAAGGGTAAGCCATTTTTGCAGCTAGACTTATGGTATAATCATGTTTTATATTGTAATTATCTATAGATGTTCACTACTTTTTGATTTGTATTGAAGTTCATTTTGGGATTGAAAGATAAGGAAAATAAAGTAATGTTGAGTTGCATCCATGTTGGATTTGTTTGATATATTGCTTCTAAGAAGTATAAAAAATAATTGGCATAGACCCTTTTTCGAATAAAAGTCTGTGAACCTCCCGGGATTTTTGCAAGATTGGAGGTTTACAGACTTTACAGGCATGAAATAAAATGAAAAGTGTTGGTATTAGTAGGTTTATTTGAAGG # Right flank : AAAACTTAACCTTATCAGTTATACTATTCATAAGCGTTTTAATGGGAAGAGGTGCCTCTGCACAGGCACCTCTGTTCATTTATGTCAGAAACTCTAAATCCTGTCTGATCGCTGTCCTATTCTCACTCAAAAAAGAATAGCCGCTTGGTATGTGCTCCCCTTGGAACGGCGAAGGCCTGGGCCCGTTTAAATCCGGCAGGCGCCCCCCTGACAATGGTCAGCGCTTTATAGTATTCGATAAACGGAAAGCCGGAGGTTTCGCCCCGGGCATAGGCATAGCAGTGCATGGCTTTTACCCAGGTTTCGTAGGCTTCCTCGGGGATATCTATAAACACCTCGGGTTCAAAATCATACGGATCTTCCCAGTTATCCGCATAGTAGAGTTTCCTGGTAAAATGAGCCGGTAAGTCGCGTTGGATCGTCTTTAAGGCAGCATAAAACCGGGCATCTTCAACAATATGGTAAGTATTGGTATGGTCCTTATGGATGCTGCCTTTCCA # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.76, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTGAATCCATAGTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 568180-568745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIQ010000001.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_1_646771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 568180 31 100.0 38 ............................... GCCGCCCTCAATGTAAAGCGGATTAATGAGAAAGCCAT 568249 31 100.0 35 ............................... CTCCTTTGAGCGGGGGCAGAGCTGCACATATGAAA 568315 31 100.0 39 ............................... CATGAATTACGATTTGCAAATGTCGCTATTTTGAGAGGA 568385 31 100.0 35 ............................... TCCTCTTCCTCCCATCAATTGTTACTGTGATTACC 568451 31 100.0 34 ............................... CATCATGCTTATCTCCTCCCTGTTCAAGCACACA 568516 31 100.0 36 ............................... GTAACTTCCCCGATTGGTTTGCCTTCTGAAATGAAT 568583 31 100.0 36 ............................... GCAGAGAAGTATCTGAAGCGTCTGCATAGGGGTCGG 568650 31 96.8 34 ..............................G AACATTGTGGTTCCCTCCTATGACCATGCACCAC 568715 31 80.6 0 C.....G...T.......A..........TG | ========== ====== ====== ====== =============================== ======================================= ================== 9 31 97.5 36 GGTTTAATTGCATCCATAGTGGAATTGAAAT # Left flank : CCTTGGCAGAAATGTAAGTTATCAACGATTAATCCGCCTGGAATGCTACAAGCTTGTGAAACATATCCTTGGAGAAAAAATATACTCCAGTTTTAAAATCTGGTGGTAACAAAAGAGGGGATCATCATGTATGTTCTGGGTGTCTATGATATAAATGTCAAGCGGGTAGCGAAGGTGAAAAAAATATTCAGCCGATACATGTTCTGGATGCAAAACTCCACTTTTGAAGGAAACCTCACCAAAGTTCAGCTCCGTGAGTTACAGAGAGAACTCAACTCTGTTGTTAATCCAAATGAAGATCATATTATCTTCTATGTCATTCGCAATGAAGATGTAGTAACCAAAACGATCATCGGAGAAAGACATTCAGAGCCCAGCAACATCCTTTAGTTGCCTAAAGTCTGTGAACCTCCCGGGATTTTTGCAGGATTGGGGGTTTACAGACTTTAGGGGAAAGAAATAGAATGAAAAGTGTTGATATTAGTGGGTTTATTTGAAGG # Right flank : GGTGGATTCAGCCACATTATCTTTTGCACTTAATGCTTGGAACAAGGTTATTGAAAATAAACTGTGATTCCGATATTGATGTCAATTTGATCAAATGCAAAGGACCTGTGGAAAAAGAAAAAACTCAGCGTCTATTGTTTATTGGGATGCTGAGTTTTGTCTATTCTGCAATTGAAAATCATGTTATATTACAAATTAACTTCCTACAGTGTCTTCGTCTTCTTCAGGCATGACGGAAAGATTAAAGATTAAAGAATATCATAAAAGTCATCCTCATCTTCTAATTTCATTTCGTGTTGGAGGAAAAAGAGCCTTCTTGTACAGTGGTTAAACTCTTCCTCTTTTCCTAGACTATCAAAAAATTCCCCCAATTTAAAGAGTGCGATAAATTGCAGGCTTTTGTGGTCATTCTGTTGGACTAGATCAGCGGCTTCCTGATAATAGGGGGCCGCTTTTTCATATTGTTGTTGACCTACGTAACAGTTCCCTTTAGCAATTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATTGCATCCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 4-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIQ010000072.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_72_630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 4 31 100.0 34 ............................... TCCAAAAAGACTTCCCATTGCTCCTCTTCGTGGG 69 31 100.0 35 ............................... TGATCATGGCAAGCTTATTAATAATCGCAGAAGCT 135 31 100.0 34 ............................... TCCAAAAAGACTTCCCATTGCTCCTCTTCGTGGG 200 31 100.0 35 ............................... TGATCATGGCAAGCTTATTAATAATCGCAGAAGCT 266 31 100.0 36 ............................... ACCCATTGAGGGATTCGAAATAGTCCATCACGGAAC 333 31 100.0 36 ............................... CACCTTCTGCATGGTTACAATCAACTAACCATTCGA 400 31 100.0 39 ............................... TTCGCACTACTGAGCAGCAGCAGGAGCAAGACAAAGCCG 470 31 100.0 37 ............................... GATGACATGGCTATTCACCTCCAGAGAACGTGTGGCG 538 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 9 31 100.0 36 GTTTTAATTGAATCCATAGTGGAATTGAAAG # Left flank : GGGG # Right flank : GTCATATCCCTTGTTTCTACCGTGTGCTTCTCGTTCGTTTTAATTGAATCCATAGTGGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTGAATCCATAGTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //