Array 1 1369-372 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVQ01000059.1 Lactobacillus crispatus strain CG-12 P-12_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1368 29 100.0 32 ............................. TGAGCTTCACCTAGATCAGCGATTCTAGTAAT 1307 29 100.0 32 ............................. AAAATTACTCCCACTGCTGCAACTAGAGCACC 1246 29 96.6 32 ............................C AACCCGGATCAATTCAACATTACCAGCGATGA 1185 29 96.6 32 ............................C AATTGTTCAAGGTGGTAAAACTTATCATCATA 1124 29 96.6 33 ............................C CGTTGCTGGATTGTGGCAACATGCACACAGGAT 1062 29 96.6 32 ............................C TTTGTACGATGTCAATGTAAGATTGTGAGAGT 1001 29 100.0 32 ............................. TTGATTGGTGGTGGATTGATGCTAGATATCGG 940 29 100.0 32 ............................. ATCCTGCCATTATTTTTCCATCTAACACTTCA 879 29 100.0 32 ............................. ATTCTCAAAAATACGTTGACGCAATTGAATAC 818 29 96.6 32 ............................C TTCTGCAAGTTCATGAAGTACTCGCTTGTTAG 757 29 93.1 32 ............AG............... AATTGCTTGTGTGCCATTTCAAGATATTTAGA 696 29 89.7 32 ............AG..............C TATCTACGCCATTATTTTCTCGTGTACGAGTA 635 29 93.1 32 ............AG............... AACCGCTCACGGCTTTCGCCATAGCTTAGCTA 574 29 89.7 32 ............AG..............C GGTTTAGGTACCATTTTTTGACGATCAAAATC 513 29 93.1 32 ............AG............... AACAGCAGAAAGTGGGATGCATTGTGGAGCTA 452 29 100.0 22 ............................. TTACGTGACTGACTAAAAAACT Deletion [402] 401 29 72.4 0 .A.........AC..........A.ATAG | C [376] ========== ====== ====== ====== ============================= ================================= ================== 17 29 94.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGTATAGCCCTTAAACCTTGATATATAAGGACTTATAAATAGAATTTAAATTCTAGGAGCACTTTGGGGCGAAACTATTCAAAAAGAAGTAGAAATGCTTCTTTTTTTTATTTGGAGTGGCTTTTTGTAATTCTGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : GCTGCTCTGAAAAATATGTTCTATAGAGTGGCTATTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTGGCGGATTGTAAAATCAAATTGAACACTTCGTTCAAATATTAAAAAAAGTCCATTTGGACTCTTTGATAGAATGTAATTAACCACAAAAACTTCTAGAAAAGAGATTCAAATGAACTTATTACAT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 127114-126049 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVQ01000011.1 Lactobacillus crispatus strain CG-12 P-12_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127113 29 100.0 32 ............................. CAGACGTGTTGTCAAGCATTCGGTAAGTCGTG 127052 29 96.6 32 ............................C TCACTTAGAAACGTGGATTGCGTTAGGTTCCG 126991 29 100.0 32 ............................. CTTATTAAAGCTTTGACTGAACAAATCCTTGT 126930 29 100.0 32 ............................. AACTTCTAGGAATCCAGCCATGAACATGTGCG 126869 29 100.0 32 ............................. ATATTTATCATCAATGCCAAAGTCAACATCAA 126808 29 100.0 32 ............................. ACCACTACTGATTATTTGCTAGGTCGGACAGA 126747 29 100.0 32 ............................. CTCAGTAACTGATAGATCAATTGTTTCATCAC 126686 29 100.0 32 ............................. ACAATCATTTTTGGAGTATCAGTTGTAGCATT 126625 29 100.0 32 ............................. AAAGGCGAATCTTTTTGGACAGCTAAAAACGA 126564 29 96.6 32 ............................C ATCTTAACCCTCTTAGTAATCACAACCTCAGT 126503 29 100.0 32 ............................. TATTTATCAGAAAAGATAATTCACTGGAGTTA 126442 29 100.0 32 ............................. GATGTTTCATTTGAGGATATGGGATTCAATAA 126381 29 100.0 32 ............................. AAGCTTCATTTTCGTAGTCGTATTGATCTTGA 126320 29 96.6 32 ............................C ACAAAGTTTGGTGGTCCAATTGTTAGATACTA 126259 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 126198 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 126137 29 96.6 32 .............A............... GTTTCCACATACCTTGCATTCAGCTGATTTAA 126076 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.9 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 150746-148151 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVQ01000011.1 Lactobacillus crispatus strain CG-12 P-12_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 150745 29 93.1 32 ...........AC................ CTGGTGCGTATAACCATAATTAACAGTTTCAC 150684 29 89.7 32 ...........AC...............C AACGTTCGCTGCATTTGCTGCACCTGGTCACA 150623 29 89.7 32 ...........AC...............C GTCAATCTTAGATAAGCGTTCATACACGCTTT 150562 29 93.1 32 ...........AC................ ATGTCGGAGACCGGTTTTATAGACCTTGAATT 150501 29 93.1 32 ...........AC................ TTTAGTGGGAAAATCCTTAGCAAGAAAAACCA 150440 29 93.1 32 ...........AC................ AGCAGAAGGAAGGTAATTATTATTGAGAAAGA 150379 29 93.1 32 ...........AC................ GAACGAATTTTAGTTCAAAAATCTATTGTTGA 150318 29 93.1 32 ...........AC................ TACTAGCCTAACTAAACAGCAGAAACTGCAGG 150257 29 93.1 32 ...........AC................ AATAATTGGATTTGTAGTTTAGATGAATGTAT 150196 29 93.1 32 ...........AC................ TAACAGTGCAAGAGCTACTGACGGTTCATCTT 150135 29 93.1 32 ...........AC................ CACTTGTTTTATCCAAAATTCAACCAGGAGTT 150074 29 96.6 32 ............................C TCCACGCCAGCTATCCAGTGTCTTTCAGTATT 150013 29 100.0 32 ............................. CATGCACAGCATCATGTGAGCCCAGAGGTATT 149952 29 100.0 32 ............................. AATAATTGGATTTGTAGTTTAGATGAATGTAT 149891 29 93.1 32 ...........AC................ TAACAGTGCAAGAGCTACTGACGGTTCATCTT 149830 29 93.1 32 ...........AC................ CACTTGTTTTATCCAAAATTCAACCAGGAGTT 149769 29 96.6 32 ............................C TCCACGCCAGCTATCCAGTGTCTTTCAGTATT 149708 29 100.0 32 ............................. CATGCACAGCATCATGTGAGCCCAGAGGTATT 149647 29 100.0 32 ............................. AATTGGGATGGGATGACCTATCTAGGCTTTGA 149586 29 100.0 32 ............................. ATCAGTAAGGCTAATTTGAGTTTTAAGAAAAC 149525 29 100.0 32 ............................. ACAGCAGAACAAAGTTACTACCTAAAGGATTA 149464 29 100.0 32 ............................. AATCAGGATCATCGGTAGGTGCGCCAGGGTAA 149403 29 100.0 32 ............................. ATTGCCGGAAAATTATTCGTGAAGCTGATAGT 149342 29 100.0 32 ............................. GCAAGTTAAATCAGCTTTTAATTCTGCTACCG 149281 29 96.6 32 ............................C GTTGCTATAGTTTGTGCCCTCTGAAAAAGTAA 149220 29 100.0 32 ............................. ATAACAAAATTGCAAAAACTAGAAAGAAAAGT 149159 29 100.0 32 ............................. ATCAACAACATTAGATAAATCTTCTTTTAAGA 149098 29 100.0 32 ............................. GTTGATAACACTAGTTATACACATGATGACAA 149037 29 96.6 32 ............................C TTCTGCAAGTTCATGAAGTACTCGCTCGTTAG 148976 29 100.0 32 ............................. AAGTCTAGTGGTAGAACCACAAAACTAGATGA 148915 29 100.0 32 ............................. AAATTTGTTGCCGGCTGGATTTACCTTTCGAC 148854 29 100.0 32 ............................. TAACAGTAAGGCTCTGGTTTATGGGCGCTGTG 148793 29 100.0 32 ............................. GATCCAAGCATATGAAAAAGCAATTACTAGCA 148732 29 100.0 32 ............................. ATTCTCAATCGTTCCAGGACTTAAACCATTAA 148671 29 96.6 33 ............................C TTAATGATTTATCAGCTTGCTCCATAATCTTTT 148609 29 100.0 32 ............................. TAGCCGATGAATTAGAAGCTCAAAACTATGAT 148548 29 100.0 32 ............................. TTTTCCGTTATTCCGCGTATCAATCGCATAAA 148487 29 100.0 34 ............................. GTAGTATATTGTTTGTGAGGTGAAACGATGGATT 148424 29 96.6 32 ............................C TAATACATCAGAATTGAACGAAACACAGCGCT 148363 29 100.0 32 ............................. TACCACTTAAATCATCACCCATTTCAATTACA 148302 29 93.1 32 ...........AC................ TATACGGTCTAATTTCGCTGAGGGTGCCGAAG 148241 29 89.7 32 ...........AC...............C AATCTAGTTTATGATACAATAAACACAGATAT 148180 29 82.8 0 ...........AC....T......T.A.. | A [148159] ========== ====== ====== ====== ============================= ================================== ================== 43 29 96.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATTAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //