Array 1 2275-3179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMS010000006.1 Planktothrix agardhii 1025 1025_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2275 35 100.0 37 ................................... AACCCAGTATAATCTGAGTTTCGACAAGCCATTATAA 2347 35 100.0 40 ................................... TTTCAGAACAATTTCTGATTCCCACTGCTGAGGAGTTTGG 2422 35 100.0 41 ................................... GTTAATACCTACAGCAAAGTAGGTTCCAATGGTAATAGCAG 2498 35 100.0 36 ................................... TCCAAGAATATCCTCCCAAGTTGGTTGCTTGGGTTC 2569 35 100.0 34 ................................... ACACCATCACCCCAAACAGAAGAGATGGTAGAAA 2638 35 100.0 36 ................................... TGCTTACCTACGACTAGGTCGAGGGTTTCCGTTTGT 2709 35 100.0 38 ................................... AGAGTTTCAATATCCCGGATTCGGGATAAAAAATTCTC 2782 35 100.0 38 ................................... CTCAGGTGCCATTTTCCCAGCTTGTTCTGGGTTGACCT 2855 35 100.0 39 ................................... CCATAAGCACAAGCTAAAAGCAAAACAAGAGTCAAGAAT 2929 35 100.0 41 ................................... CTATTTAAGCAAAATAATCCCGTGGTAAATGTCACCGTGTG 3005 35 100.0 36 ................................... TATCAGTTCTTACGAAAACATGGCGACCTTTTTGAT 3076 35 100.0 34 ................................... TGTCTCCTCACTACCTAATAGTTGGTAGAAAATA 3145 35 94.3 0 T.................................A | ========== ====== ====== ====== =================================== ========================================= ================== 13 35 99.6 38 CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Left flank : GAGTTTCGCGCTCAAATTGTTGACTCATTTGTCAGTTATTTGGTCAATTCTAAAATTTTCTTGCTTGAAGATTTTACGTCTCCTGATGAATTGGGTGGTGTTTATCTTCAGCCGGATGCACTCAAAAAGTACCTCAAACACTGGGAGGAAAAGTTGTATTCTGAAGTGACTCATCCTCAAACCGGGTACAAAGTTAGTTTACGACGTTGTATCGAGTTACAAGTCCGAGAGTATATTGCGGCTTTGATGGGAGAGGTGGAAGTTTATCGCCCGATGATTTGGAAAAATTAAGGATACAGGTTAAGTTTCTGAGGGGGTCTGGGAATTGCTGAAATCCTCATTCTTGGGTTGACCCCCTCAGATCGCCCTCTCTGTATCGATTTCAAGGATCGTTTATTGTTGTTTATTGAGAATAAATAGTATGGATTGAAGTCAAAACTTGACGCCCTCAGATTTAGGGGTTTATAATCCAGTCAGAGCAAGGCTTCTATGAGCCTAGA # Right flank : ATTAAAAATAGTCTCAGCCTTGGATTTTAAAATATCCGAGGCTTTTTTAGATATAAAATCAAGAAAATATACTCAAAAAAATATTGAAAAATATATTAAAATAAGAAAGATATATAACTTATATACAAACTTATATAAACCTTAATTTTACCTAGATATAAACCTATATAAAGCTCTGCAAAAATTAGCTCAAAGGAAAAAATAAACCGTAAAAACTAATTACTGTTTACGTTTTTCCTGAGTTTACCCTAGAGTTAAATTGTGTTTATGCCAACAATTTATGTCATTCATCCAGGTTCCAGTATTGACGTGCATTCTCGTTACCTGCAAGTTTTCCATAAACAGCAGTTGTGTTTAGGGGTTCCCATTAACCGAGTTACCCAAATTATTCTGTTTGGTATTTGTAACCTCTCCCGCAAAACTCAAGTTTTAATTGCAACTCGCCAAATTCCTGTCTATTATATTAATGTTCATGGGGATCAGTTAGGAAGTTTAGAACT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 9366-10180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMS010000006.1 Planktothrix agardhii 1025 1025_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 9366 36 100.0 49 .................................... CCCATCCCTGAAAAATAAAAGAGAGGAGCAAATAAAAAAAGCCACAGAA 9451 36 100.0 32 .................................... AAGTAATTGGATAGCTCTTTCTGTGTACCGAG Deletion [9519] 9519 36 100.0 41 .................................... AAGGGTGTAATATCAACAACAATATCTTTGTCGAGTAGGAA 9596 36 100.0 46 .................................... ACATCCAACATCGGAGGGGCGAAGGTTCCATCTGGAACTTCAACCA 9678 36 100.0 41 .................................... ATTATTTGTTGGCTCAAAGTTTTGGACTCTGGGAATTGATA 9755 36 100.0 47 .................................... CTATCTTTGTCGTAGCAATATTTAACCGAATCAGCCGGGTGTCCTGT 9838 36 100.0 35 .................................... TTGTAGCGCTCAACAATTGAATCAAACTCCTCGCA 9909 36 94.4 48 ......TC............................ TCAATGATAATTCCCATTTAAAACCCTCCCATTAGTATTGATAATTGT 9993 36 91.7 35 .......C.........A..A............... ACATACCACTTTTCTCCAACAATTTCTTGTGGGAT 10064 36 88.9 45 ..A....C............A.....C......... AACCAATTGTTGAGAAATCCATCAGGGTCAGGTTTTCCATAGTTG 10145 36 88.9 0 .......C...........A......C....A.... | ========== ====== ====== ====== ==================================== ================================================= ================== 11 36 96.7 42 GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Left flank : AATTAATCGTTCAAAATCTACTAATCGAGAATAGGGATGGAGGGTATAGTTAGCGGTTCGACTTTGGCGAGTTTGATAAGAACGAGAGAACCCTGTTAAAATCTCCTGAATTTCGGATAAGGTTAAGGATAATTCGGCAATATTAATTTGTTGAATACCAATAAATCCTTCTGTAATATCGGGCGGAAAAATAGTCAGAAATTGAGTAAATTGATCAATGATAGCATTAGGAACTTGACGGGGACGGTTTTGGTTCCACTGTTTGCAGGTTTCTATGGGGGTTGTTAAATGCCAACCCATCCAAGTTGAATGTTTTTCTAAAGTAATGGCTATTTTCTGTAAAAAATTCAGTCGCCAAGCTCGTTTAACATTTGTGGCATCATATATAATTAGTTTTCCTGAAGCGATCACATTTTTAATCTGGTTTAGCACTTCAATTTCAATCTGCTTCCAGTCTCCCTGGATGCTTTCATCTGTACCAGTGATAAAATCAACAGGAA # Right flank : CCTAACAAAAAATCCCTGAACTCAAGCTAAGTCAGGGATTTTTTTACTAATAAAGTTGAATCTGGCGTTTTATAAACTATTCGCTAAGTCTTTAAGATCTTGTTCAATCAAATTAACCTCCAAGTTATCATCTAATAATCTCAGAGAATGCAAAGCGTTAATAAATGGCTTTTTAACATTCAGATTATAAACATTTTGAACATTTTGATTTTCGTCAATATTGGTTTGGTTGTTTGGATCAATAAGATAACGAAGAATATCTTTTTTTTCTCCTCCTCTTAAATTATGAACATATTGGTTTCTTAAATCTAAATCATGGGTTCTGCTATATTCACAAGACCATTCTAATAACTTCCACTCCCAATTTTCAAGATTTAGTTTTTCTTTAGCCAAACGTTGAAGCCACGCAAATAATCGAAAATTTTGTAAGTTATACTGAAAAGTAGATGGGTTTGAATTATTTTGGGAATTGCAAATATTATTTAACTTAAAAATATTAT # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 38355-39461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMS010000008.1 Planktothrix agardhii 1025 1025_scaffold004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 38355 36 100.0 46 .................................... AGGAAGCTTGTATTAGTTCTTAGTGCTTTGGGTTTAGTGACGTGTA 38437 36 100.0 38 .................................... CCCTTCTCAACAGAAGGTACTGTAGCAATCCCTTGGGC 38511 36 100.0 42 .................................... CTTTAAACTCTGTTAGAAAGTTTATTTCGTCTTTCATTCCGA 38589 36 100.0 42 .................................... AATTGGGGTCGGGTGCGGGTCGATTCTTTAAAACCCAAGCCG 38667 36 100.0 35 .................................... GGTACAGGTTGCCGTCCGGGGGAAGCAAACGGACT 38738 36 100.0 43 .................................... TTGTTTCAAAATCCCCCTTGCCTTCTCAAAGACGATTGCCGCC 38817 36 100.0 37 .................................... GATTCAATTAAAAACGGGAACGCTCTTGATTCAGTAA 38890 36 100.0 43 .................................... AATCCGTTCACGGGTTCGAGTTCTTGCCCTGTTTTTGTACTCG 38969 36 100.0 44 .................................... TGGTTTGGAGTAGCAAAAAATATGTTCAAATTCATTGTTACGAG 39049 36 100.0 36 .................................... TATGCTCCTATTAATCCGTGAGTTGTCAAATCATCA 39121 36 100.0 40 .................................... ACAGAAGATTCGCCGTCTTCCGCGAAGATAACATCGCCCT 39197 36 100.0 42 .................................... TGGGGATTGGATTTCCAAGGATAGTATTGAGTCATTAATCGA 39275 36 100.0 33 .................................... TTAGCTTGCATGGATTACTCCTTATAGATTTAA Deletion [39344] 39344 36 100.0 46 .................................... TCGGGGTTGGCTTTTAATCCCTGGACTATTGAGTACAGGCGATTGT 39426 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================================== ================== 15 36 99.8 41 GTAGCGACCTTCATTAGAAGGAAAAGGTTCTGAAAC # Left flank : ATTGTACATGGAGTTTGCAGCAGTTCCAATCCTGATAAACCAAATTGGTGTGGTATTTCAGCAGATGATATTAAGAACAAAAAGGGTCTAAAAAACAATAAACAACCTTCTAAGACTATAATCAAAAAATCTGAAAGAGAAAAGGAGATTAAAAATAAGGAAGAACGACCTTCCGGTTATGCAGTCAGAGAATATGAACAAGAAAATTTTTGTTTAATTACAGTATTTGAGCCTGAGATGACTTGTTTTTTCGATCCCAACTCTCAAACTCAACCGACTCAGGATGATAAAAGGATGTTTGCACAAATCTGGGGGTGAATGCGAGGCTCAGGCAAAAGTACCTCAAACAACGTAAACTCGTTAGGAGCCCCGATAGCTTACTCTATAAGGATTTTGGTTATGTCTACCTCTACATTACTTCAGCTTTTTCATCATCAAATCAGTAAGCCTCGCAAACGCCCCCTAGACATTAAGCAACATAAGGGTTTTAATAGGTAAGG # Right flank : TAAGAAAAGGGTTTAAAGCAAAAATCTCCCAATATGGGAGATTTTTTTTATTCAAAACTATGATAGTTTAAACAATTATTGAACTCGGATACTCAGTAATCTTTGGCCCCTGACCCCAAGTTTCCACACTTCCCCAGGTATGGCGGGAAAGGGGATAAAACCGCAGGTTATGGGGTAAAGACAAGATACGCGCAAAATTTAGCACGATGTAAAGTTGGGTAAGAAGGCAAAAATGGTTTCTCACCCTCCTCCCCCTGTCAAAGTAGCGTCTAAGCGAGAGCGGGAATATTTGCGTAATTCGTGGGAGATACAGCAATAACTGAATAAATATTTTTGAATCCATTAGCTTATTTATGCTGAAAGTTTGGGTTTTATGAATACTTGAATACTATTTGAAAGAACCATAAAAAGAGTAGGATGATTGAGGCCCTGAAATTTGCAAAATCCAATGTTTAAAATTGTGAGAATCTAAGCAATAACCTCCCCGTCCTTGTAAAATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGACCTTCATTAGAAGGAAAAGGTTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1609595-1607798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMS010000001.1 Planktothrix agardhii 1025 1025_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1609594 36 100.0 38 .................................... GATTTTGTCCATTTGTTCTTGTGTAATGTCCATATCAG 1609520 36 100.0 45 .................................... GCCTCATAAGTAGCTGTCTTAGCCTGAACTTGGAAGGGTTGAGTA 1609439 36 100.0 33 .................................... GAGCCTGAGATTCTGCCTCAAGTTCTTGTAATT 1609370 36 100.0 39 .................................... TGGATTGGGAATATTGAAACCCCCGACCGTGAACCAACA 1609295 36 100.0 41 .................................... TTAACTCTTCCAGTTCTTGTTGGATAACTTCAACAGCAGTT 1609218 36 100.0 40 .................................... AGATGTAATAGATCGTTTGCCAATACTTTCATTTTTTTGC 1609142 36 100.0 36 .................................... TTAACTCCGACATAGTTCCCATGCTATCAAGATAAT 1609070 36 100.0 41 .................................... GCGGTGAAGTCTTGGTTTTCCCTAACCCTGAATCAATTGGA 1608993 36 100.0 42 .................................... CCTAGTGAAACATCTTGAGAGATTGATGATACAATACTTCCA 1608915 36 100.0 42 .................................... AAGTCACCAAAAGTTGGAAAGCCCCCTAAATCCCACACGAGG 1608837 36 100.0 38 .................................... AGGAGTTAATACATGTCTACTTTAGCACTTGCTCGTCC 1608763 36 100.0 39 .................................... TCCGCGACATCAAAGATATCTTCTAATTCAAACATAGTC 1608688 36 100.0 38 .................................... GAGAGTAATTGACGGCCCTATGAAAGAATTACTTTCTT 1608614 36 100.0 38 .................................... ATTAATTAATTTAAACGGTTGCACAAAAAGATTATAAC 1608540 36 100.0 44 .................................... TTGTTGATGTTTTAGTAGAAGACTTGGCTTGTAGGAGACGTAAA 1608460 36 97.2 45 ...........T........................ AAGAACTATCCAATGTTCTTTCTTAAAGTGTTTAGCTATATCTAA 1608379 36 97.2 41 ...........T........................ CCGCCGTTGTCTGTAGAATTGGGTTATGTTGTTTTCGTTAA 1608302 36 100.0 40 .................................... TCCATAGCATCCCAGAATGTAGCGATCAAGTCAGTCCGGT 1608226 36 100.0 45 .................................... GCCTTGACGGTCTTTTTTGTCGGGTGCGGTTTTGATTCGGGTAAT 1608145 36 100.0 40 .................................... TCACCTTCAACTTGAAGTTTGTAATTGAAGGTTCCCACCA 1608069 36 100.0 44 .................................... AACGAAATCAAGAAAAAAGCCCAAAAATTAAAAGCTGAAAACGA 1607989 36 100.0 45 .................................... TTAAAAGTAATGACCGCATAGGAGGTAAAAACATAGCAGTTCCCT 1607908 36 100.0 39 .................................... AGAAAATGTTTTTTTATCTATCGTAAATGTTTTGCAATA 1607833 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ============================================= ================== 24 36 99.6 41 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TGAAGGATATAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAGGCGAGTTCAATATTCGGTGTTTGAATGTGTTTTGGCTCAGTCAAAATATATTGAGTTACAAAAACGCTTGAAAAAACAGGTGAATTTAGCGGAAGATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTTAACTTTTGAAAAACTCCAAACACCCTTTTAAAACTCAGATAAACTTAATTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTATAGCAGTCGCCACATCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 2983432-2982797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMS010000001.1 Planktothrix agardhii 1025 1025_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2983431 37 100.0 37 ..................................... AGTATAAACTGTTAGAATCAGAGCAAAAAAACACCAA 2983357 37 100.0 36 ..................................... ACGCTAGGAAAGGACGCGCCCAAATTTATCTATCCC 2983284 37 100.0 36 ..................................... TTGGCAGTCCCGTGTTCCGCAAGAATCCCAGGTTAA 2983211 37 100.0 43 ..................................... ATTAGAGCCTTCTCGCCTCTTTTAGCGTGATTAAAATATTGTA 2983131 37 100.0 37 ..................................... ACTCATAAACAGCATTTAAGAATACAATTCTTTCCCT 2983057 37 100.0 36 ..................................... GATAAGGTGAAATTCCTTTTAAATCCTCTACTTGGG 2982984 37 100.0 38 ..................................... TAATGGCAGTCCAAAGGAACGGCAGAAAGCGGCTGATT 2982909 37 100.0 39 ..................................... GTTGATGGGTCTTGGGCTGTTAATACGTTTATTCTAGTA 2982833 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TCTAGGGTTGAGTAAGAATTGCGATCGCTTAAAATTACATCCCATCCTTGCAATTTCAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATATGTTTCAGTCCCGCAAGTGGGATTATTTTAATTCAAAGAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAAGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTCAACAATTGAGCGAT # Right flank : TCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGAAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAATATAAACTGTTAATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACGATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAGGCTTGGGTTTGAGGCACTAACTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 3799168-3799856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMS010000001.1 Planktothrix agardhii 1025 1025_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3799168 37 100.0 33 ..................................... TATACTTATAGAATTAATTGCCGTTTTGAAAAA 3799238 37 100.0 37 ..................................... AATCCTTCATCCTCAGCCCGAGACTTTAACATCGCCA 3799312 37 100.0 37 ..................................... CTAAGCCCGTGGGAAGACCGAGAATTCATCCCAAAAA 3799386 37 100.0 37 ..................................... CACGATAACCTGTCATGTGGCACGGTGATTCCGGTAA 3799460 37 100.0 34 ..................................... CGGTTTGGATATCTTGAATTAGCTAGGGAAAATA 3799531 37 100.0 37 ..................................... ACTGGGTAGAGATTGACCCTCACAAACACCGCCCAAA 3799605 37 100.0 33 ..................................... AAACAACCGTGTTGCAGCTTAATACCAAGGAAT 3799675 37 100.0 38 ..................................... TCAGCAAGAGCTTGTAAAGCGGTTAGTTCATTCCCTAA 3799750 37 100.0 33 ..................................... TGGTTAGATCCTTTGTTCGGAGCGCAAGGGGTT 3799820 37 97.3 0 ..............C...................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.7 36 ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Left flank : GGGTGGTAAGGTTTCCAGTGATGATCTCAAATTGTTCTGGGAATCATTATTAAATTGTTGGGAATTTGACCGGAGTTCAGCACGTTCTTCAATGAATTGTCAAGGGTTGTATATTTTTACCCATGATAGCAAATGGGGTAATTATCCATCCCATAAGTTGTTTGATTTGCTGTCAGTCGAAAAAAATACGGATATCCCTCGAAGTATTAACGATTACGAGATTAATCTGGGGGATGTGCCGGACGGTGTAACTTTGAGGGAATCGCGCTAACCTATAGCTGTTTTGGGGCGTTTATGCCAGAACCCTTATTCTGTAAGAGTTCTGGCTGTTTTTGTGAAAATAGGTTGACGAAATTTGTCTAAGCCTTGACTTGAAGGCGGTTCAAGGATTTTTTTTTAATACAAAGTTGACAAAAAATAGAAATATTTGCTATGATCAACCTAGGTTCACGAAATTGCACCTTGAAAATTAAACATCACAGGGGTTTCGGCAGCCTGCT # Right flank : CAAAGATAAAATACTAATTACCCTAATTATTAGTATTTTATCTCTCTAATTAGTTTAGCATAAGTTTCCGAAGGGCGATCGCCTAAATGATCCTCAACTTCCCTTTCTGTTCCCCGATTAAAATTAATACTAAATAACCCAAACCTGGGCGTATAAGACCCCCATTCATAATTATCCGTTAATGACCAGTGCATATAACCCAAAATCGGAATATTTTCCTTTAATAATTGTTGAATTTGACGAACATGAGCTTCTAAAAATTGGCTGCGATGCAGTTGGTCAGTGCGATGAGTGGCGATACTATTATCCGGTTTTCGACGTAACGCCATGCCATTTTCAGCAATTAGAATCGGGAGGTTATATTCCTGAGCATAATATTTACAGAAAAAAGATAATCCTTCTGGGAGCGCTCGCCAGTCCCACCATTTACTCGTAATTCCGGTCATTAACCAATTTCTTAACCCTTTAGTTTTAAATTCAAAATCAGAAAAAGACGGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAACAATCCTCAGTAATGGGGATTGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 4 4067233-4067798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMS010000001.1 Planktothrix agardhii 1025 1025_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4067233 37 100.0 36 ..................................... CATAACTATTAACTATAGCAGTTTTTTCCTGTTCTT 4067306 37 100.0 40 ..................................... CTGACGATGTTGCGCCATAGTCTGAAGTTGGCTCGACAGT 4067383 37 100.0 38 ..................................... CTTTGATTCAAGGAATCAATGCCCGTCACCGTCCCAAA 4067458 37 100.0 44 ..................................... TTGCGGCGGATTTGATCCGCCCACTTAATCTGTTTTTCCGAGCC 4067539 37 100.0 36 ..................................... CTTTTCCTAGTTCCCAAATCGCGTAACCTTTCTGCT 4067612 37 100.0 37 ..................................... AATCAATTCCAGGTTTAAAAATATAAGGTATATTGCT 4067686 37 100.0 39 ..................................... AAAGGTTGGTGATTTTGAATATCCTGGGACGTTTTCAAG 4067762 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================ ================== 8 37 99.7 39 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGCTTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : CAGGACTTACGCAAGCACGCGTGTGCCTGCGTAAGTCCTGATCGTAATACCAAAGGTTTATAAACCAAGTCTTCCTGTAAATAGCGTCCTAATAATCGAGCTTGTAATTCAATCGCCCGTCGATAGGTGCACCGATACTCAAAAACTGGATGTTTAAACTCATCATTCATTTTCCGTTCAAATGCTTGTAAAAACCGCTTACGTCCCTCATCTTTGAGTCGATAAGCACCCAAACTTTCGGTAAAATCATCCGGCTGAATTTCCCGTTTATTTAATACCGAAAATACCAAACTATCCGCCACCAAAGGACGAAATTCCTCCATTAAATCCAGCACCATTGCGGGTTGACCCCGACTGACTTCATGCAAATATCCAATATAAGGATCAAGTCCCACTAAATGCACCGATGCTGTTACCTGTACCCGCAATAAACCATAGGCAAAACTCAATAAAGCATTCACTGGATCGGTCGGTGGACGACGGTTGCGACCTGGAAAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //