Array 1 429818-432100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOEU010000003.1 Listeria monocytogenes strain L50 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 429818 36 100.0 30 .................................... TGGCTATTAACTATGTAGACAAGTACGGTA 429884 36 100.0 30 .................................... CCTTTTCCGTTTAAAGTTTGACCAGTACCA 429950 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 430016 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 430082 36 100.0 31 .................................... CATATAAAACATTACAAGAAGCGGAAAACGA 430149 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 430215 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 430281 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 430348 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 430414 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 430480 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 430546 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 430612 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 430678 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 430744 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 430810 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 430876 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 430942 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 431008 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 431074 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 431140 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 431206 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 431272 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 431338 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 431404 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 431471 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 431537 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 431603 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 431669 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 431735 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 431801 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 431867 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 431933 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 431999 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 432065 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 328172-327431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOEU010000002.1 Listeria monocytogenes strain L50 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 328171 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 328106 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 328041 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 327977 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 327911 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 327847 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 327784 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 327720 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 327655 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 327591 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 327525 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [327501] 327459 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //