Array 1 4183-1531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTA010000031.1 Streptomyces olivaceus strain TRM81-6 Scaffold28_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4182 29 100.0 32 ............................. AGCATCCCGCCGACCGGGAGCACCCTCAGGGC 4121 29 100.0 32 ............................. GCCCCCGAGTTCCGGGGCACCGCTATGTGCGA 4060 29 100.0 32 ............................. TGTGGCCCGCCACCAACACGCTCTGGGCGCGG 3999 29 100.0 32 ............................. TGCTGCACATCATCAGCGGTCGACGGGTCGGT 3938 29 100.0 32 ............................. CGCTACGACACGAAACGGTCCACCAGGCGGTC 3877 29 100.0 32 ............................. CGGCGCCTGTCCGTCCTCACCGCGCTGTCCGA 3816 29 100.0 32 ............................. ACCCACACCGGCCCGTCCCAGCCCGGCACACG 3755 29 100.0 32 ............................. GCGCCCGGACTGTGCCCCACCGGGAAGAACAA 3694 29 100.0 32 ............................. CCCACCTCCACGGTCGTCCGCGTCCACGCCCT 3633 29 100.0 32 ............................. GTCACCATCCTCCACGTGCCCTCTGGGCGGAC 3572 29 100.0 32 ............................. GCGTCCGGGTTGACGACGTCGGAGCCGACGCG 3511 29 100.0 32 ............................. GTCGCCAGGATCGAGTCCGAGCGGGGCCCGCC 3450 29 100.0 32 ............................. TGGTGTTGTGGCACGGGAGGCAGGGAGAGGCT 3389 29 100.0 32 ............................. GGCGGCAACGCGAACGCGGGCGCCGCGCACCG 3328 29 100.0 32 ............................. CACCGCCACCGGTAGAGGAAGGAGCCCGCCCG 3267 29 100.0 32 ............................. AGTCGCGAAACGTTCAACATCGGCCCCTCTCA 3206 29 100.0 32 ............................. CCGGGCGCGTTCGTCCGCGTCGGCGTCCGCCA 3145 29 100.0 32 ............................. GCGAACTGCGGCGGCGCTGCCGGGCTGATCGT 3084 29 100.0 32 ............................. TCGGTGACACCGTGCGCGTAGTTGATCCAGCC 3023 29 100.0 32 ............................. ATCCGCGGGCTCACGAGCCGATGAGGGTCGCC 2962 29 100.0 32 ............................. CAACTGCCACGGGGTGAGGCCGCGGTGGGAGA 2901 29 100.0 32 ............................. GTGCCGACGCCCGGGTACATGGCGGCCAGCCC 2840 29 100.0 32 ............................. ATCAGGTGGCCTTCCGGGCGTGGGTGCGACGG 2779 29 100.0 32 ............................. AGCGCTTTTGTTTTCGGGGGAGGCCACTCCCG 2718 29 100.0 32 ............................. GGAACTGCCTCGTACTGGTCCAGACGGCCCCG 2657 29 100.0 32 ............................. ACGGTGCTGTACTCATTGAACGTGTCGGCGAT 2596 29 100.0 32 ............................. AGCGAGTCGCCGCCGGGAAGCCCGGAGTAGGC 2535 29 100.0 32 ............................. GACAGCCGGTTCCAGCCGCCGATGATCGAGTT 2474 29 100.0 32 ............................. CCCCTACATCGGAAGGACCAGCCGATGACCGA 2413 29 96.6 32 ..............T.............. TCTTCAACAAGCACATCCGAGACCGGTGGGAC 2352 29 100.0 32 ............................. TGTGCGCATGTCCGGCACGTAGGCGTGGTTCT 2291 29 100.0 32 ............................. CAGACATCCCGCCGCTGGCGCTGCCACCCCAA 2230 29 93.1 32 .......................AA.... TCCAGGTCCCACGTGTAGTCCTGCGGTTCCTC 2169 29 96.6 32 .........................C... GGGTAGGCAGGTCGGGGGCTCGGGGGGTCGGT 2108 29 93.1 32 ..................A......C... CACGACGATGCCCGACACCGAGCAGGCCGCCA 2047 29 96.6 32 .........................C... GGCCAAACGCCGACGGGGAGCCGTTCGACCCC 1986 29 93.1 32 ..........T..............C... GCCGTGCGGGACTTCGTCCACGCCACACCCGA 1925 29 93.1 32 ..........T..............C... AAGCCGGTGTGCAGGGGATCGTGCCCGGATCC 1864 29 96.6 33 .........................C... TGCCGGGAGTGGCGCGCACAGCTCGTCGACTTC 1802 29 96.6 32 ...........G................. GTCCGGTACCACCGAGAGAAGGAGCGCGTTCT 1741 29 100.0 32 ............................. ACGGAGGCGACCAGGCCTCCGGCGATGATGAC 1680 29 100.0 32 ............................. CGGCAACCTGTTCGGTTTCGGAACCGAGTCCA 1619 28 93.1 32 ...A....-.................... AACGATTACGTGTGGGGCGCTAGCGTGAGTTG 1559 29 96.6 0 ................T............ | ========== ====== ====== ====== ============================= ================================= ================== 44 29 98.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGGCACGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACCCCGGCGAGCCACACGGCGAGGGCACGGGCATCCGGCTCTCCGCCGGGCAGCGCCTCGGACACCAGCTTCCGCACGCTTGCGGGCAGCCATTGGTCCCACAACAGGCCGGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAGCGGCAGCCAACCATCGCTCTCACGATCATGCTTCGCCCACACCGACCGTGCCGGCTCCCCAAGCCGACGCAGCAGGGCGGAACGGGCGTTCCCCCCATTACTCATGGGTGATTGATACAGGGAAAACCCGGCTAGCCACGCCAAAACGAAGAAACTGAGGAATCGGCAGAGGGTTAGCCCTCCCAAGGCATACGATGATCGGCTGCCTCTGGAGACCTTGTGATCGCGACTGTCGCCCGAACACCCTATTTGCCGGAATCTGCAGAAGTCTCGGAAACCACGCCCCCGAGCCTATAAACCCGCAGGTCAAACAGT # Right flank : CCTAGTACTGCAATGGTGCTTGCCGTGACTGGTGGCCAGGTCAGGGGATGTGTCCGCGTCGTTTGTAGTGGCTAGTGCGGGCCTGGTGTTGTCGTCGGCGGCGCCAGGTCGACCAGTGCAGGATGTGCTCGACGGGTGTGGGCTGGCGGTTGGTGAGGCGGGTGATCAGCTTTCGTATCTCGGCGAGGCTGAGGTGGATGAGCTGGGAGGATCCGTTTCTGCTTTCCCGGTATCCAGCTCGCGGGCTCGCAGGACGGTCAGGCAGGCGTGGGCGGCCATGGCGAGGGTCATGTGGCGGTGCCATCCGGGGTGGCGGCGGACCTGGTAGTCGTCCAGGCCGCATTCCTGCTTGGCGCTCTGGAAGCATTCCTCGATGGCCCACCGGCTGCCCGCGATGCGGATCAGGTCGTCCAGTGTGGTCTCGGCGGGGCAGTAGGCGATGTGGTAGGAGATCTCCTGCGGGCGGGCGACGCTGCGGCGGGCGATCACCCAGTGGCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13942-16228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTA010000031.1 Streptomyces olivaceus strain TRM81-6 Scaffold28_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13942 29 100.0 32 ............................. GGCAGGGTTCCAGCCCCGCACCGCGCCCGGCC 14003 29 100.0 32 ............................. ACTGGCATAGGTGCGCTGCCAGTCCACCGGCC 14064 29 100.0 32 ............................. GCGACGCTCACACCGAAGCCGAGCAGCGCGAC 14125 29 100.0 32 ............................. TTCGCGAAGTTCTCCGCCGTCACCGACGCGTC 14186 29 100.0 32 ............................. GGCGGCGTCCGGGTAGGCGGGGAACGGAGTCG 14247 29 100.0 32 ............................. GCCCGCAAGCTGCGGGACACGCTCCTTGCCGA 14308 29 100.0 32 ............................. TTCACGACCGCCAGCCGGGAGAGACCGGCGAT 14369 29 100.0 32 ............................. CAGAACGCCCGCCGGTCCGGCTCCGGGGACGC 14430 29 100.0 32 ............................. CAGCCGGGCGGGGTGCAGACGAACACAGCGAA 14491 29 100.0 32 ............................. TCCCGCCGGGTCGCCGACTCCCGGTCCAGGTT 14552 29 100.0 32 ............................. CTCAGGCCAGCCGTTCGAGCACACCCGGCGGA 14613 29 100.0 32 ............................. TTCCAGCAGCGCCTCACCGACAAGACGGAACG 14674 29 100.0 32 ............................. GCGGCCATGTGCTGCCTGAGCCGGGTCACCAT 14735 29 100.0 33 ............................. AACCAGGTCCGCCGGAAGGTGCAGGGCCCGCAC 14797 29 100.0 32 ............................. CGTGGCGGGCGCGCTGCGCGGACTGCGGCGCC 14858 29 100.0 32 ............................. GACCTCGGAGACCTGGGCTCCCCCGAATGAGT 14919 29 100.0 32 ............................. TCCTGGTGGGAGGGCCGGTTCCTGGAGAAGAC 14980 29 100.0 32 ............................. GTGTCGAAGTGGAACTCGGCGGCGCCGTCCTG 15041 29 100.0 32 ............................. GTGAGTTCCTGCCCCGTCTTGACCTGATCGGC 15102 29 100.0 32 ............................. CCCCTTCAAGCCCCCGGCCGGGCCCGTCGCGG 15163 29 100.0 32 ............................. GAGATCCTGGAGAACGCAGCATGAGCATCCCG 15224 29 100.0 32 ............................. CCGGAAGAAGGCGCCCCCTCGTGCCCTCCGCA 15285 29 100.0 32 ............................. AGCCCGGAGTCGGTGAGCTTCCCGAGGGGGAT 15346 29 100.0 32 ............................. CGGTCCAGCTCCCCGCGCAGCGCCTCGGCATC 15407 29 100.0 32 ............................. GTCACCCCCCTCGTGGAGGGCATGCTCTTCCT 15468 29 100.0 32 ............................. CACCCCACCCGACCACCGCACCCCTGACAGAC 15529 29 100.0 32 ............................. GCCGGCATGGGGAGCGCCGTACTCATGTCGGC 15590 29 100.0 32 ............................. CGGCCCGATCCGCCGCGCGGGGGGTCAGGTCT 15651 29 100.0 32 ............................. GAGGTCGTCGCCTCCGGTCGCATCAAGTCCGG 15712 29 96.6 32 ...........G................. GTGGCGGGCAGGCTGACCGGGGCCTCCATGAA 15773 29 100.0 32 ............................. TGGTGAAACGTGGTCGGTGGCCTGGTAGATGG 15834 29 100.0 32 ............................. CTTCTGCCCCACCCCAACCTCGGGGCGAAGCG 15895 29 100.0 32 ............................. GCGGCCTTGATCGCGTCGCCGACGCCCTTGGT 15956 29 100.0 32 ............................. CGGTACGCGTAGGCCCGCTGCTCCCAGGTGCG 16017 29 100.0 32 ............................. TCTCTGTCGCCCATGCGCGCTTGGGCCATGGC 16078 29 100.0 32 ............................. GGGTGACGTTCGACTGGGCGTAACCGGGCACG 16139 29 100.0 32 ............................. CCGAGCAAGAAGGACCGGGCCTGGCTCCACGA 16200 29 89.7 0 .............C...A..........T | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.6 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CGGCATCAACCACGACGGCCCCGAGGACTATGGAGACGAACTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGACTACGCGGCTTCCTCACCCGCTGGCTGCTGGAAATCTCGGCCGGCGTCTTCGTCGGCAACCCCTCCGCCCGGGTCCGCGACGCCCTCTGGCAAGAGGTCCAGCAGTACGCAGACCAAGGCCGCGCTCTGCTCGCCCACACCACGAACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCGACCGACCACGAAGGCATCACCCTCATCAACCGCCCCGACCCCAACGCGCCGACCCCCGGGCAAGCCCCAGCAGGCGGACCACGCCCCGGCTGGAGCAGAGCCGGCAGACGCCGCCGCTTCGGAAGAGGCTAAAGCACACCATGCAAGATATGCACGATTTGCCGGAATCAACGAAAGTACTCGAAAACCGCTCCCTGCGCCCATAAACCCGCAGGTCACCCAGT # Right flank : TGCCCCTGTTCTGCGCCCTCACATACCTGTTGCGCGACACGCAAGTTCACCGGGGGAGAGCCCCACCCCCGGCCCGAGCGCCGTTCCACTCGCACCACACCACCTTGCCGGGTGCCCGTTCCGCCACTCCCCATTTGTCGGCCAGTTCCGACACCAGCAGCAGTCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGGGGTACGGCCGGTACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGCAGCAGCCGCAGTAGGAAGCCCCTGCCGGGTGGTGCGCCGTGCACCAACGCGTTGGTCGCCAGTTCGCTCACGCACAGCGCCACGTCGTCCGCGCGCCCGTGCACACCCCAGTCGGCGAGCACCTCGTGCGCGAACACCCGTGCGGCGGGGACGGACCGGCGCTCTCGGCGGTAGAAGCGCTCACGTGGGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGATGGTCACGCTCCGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 175183-175332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTA010000021.1 Streptomyces olivaceus strain TRM81-6 Scaffold18_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175183 28 96.4 33 .....................A...... GCGAACCTTGAGCACCGGTAAGCGGGCCTCAAT 175244 28 100.0 33 ............................ GGCCACTGGCTCAAGCCGCTGCACCCGTTCGTC 175305 28 96.4 0 ......................C..... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : GGCCCGAAACTTCCTGGGCTACCTCGGACTCGCCCTCCTGCTACGCCTCCTCACCAGCCCTCGCATCGCGGCCACGATCGTCACCGTCTTCCCCATCGCGTGCGCAGCGTTCGGAGTGCAACACGGAGTACCCGCACGGTGGGCCTGGCCCTTGCATGAGCCGACCTACCTACCGGCGTTCATCGCAGCCATCGCTGTGGGAGGCGCAGGACTGGCCGCGTCTGTACTCCCTCCTACCGCTGGCCGCCTGGCTCGGGTATCGCGGTAGCGATGTGGTGAAGCGCCCGAAGGCCGTACCGCCCACCGCATGCAGTGGCCTTGATTCCGCAAGTTCCGATAGCTGGCGGTGACGGTGTCCTTTGGGCTGGCGATCAGGGTCTTGGCGCCCCAGCCGCCACCGGCGGCGGCGTTGGTGCCTGTTCTGCCACGCGCGCTGGCCGGTTCACCTCCGTCTGCGCGGAGCGGACGCACACGGCGGTGAGGCCGCAGATCACCCAGAC # Right flank : GTATGTAGGACGAACATCCGTAGGCACCCAAATTGCGCCGGTTTCAGCCGAACATCGACGCCCAGGAGTGTGGGCGTGGGGCTCTTGTTCGATCGTCACCACAGTGTCTCTGGCCTGCGGCCAAGCGCTTAGAAGGCGCCTGCTCTATCTTCGCGTTCCCTGGCTGTCGAGGGGCAGGTATGGGTGGGTTCGGGCAGATTCGCCGACAGCAGACACATTGAGTCCCATACGGACTGGATTAACTCGGTGAAGGAAGCAAACCTAAAGGTTGTCCCGTAAGCCCACGAGGCTGAGGGTCATGCTGCGTCAGGGTCGGTGCCGATGGCGCCGGCCGAGCGAAGGGAACGCCCGAGGTCTCCGGTGAGGATGCGCGGGTGTCGCCGCCACC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //