Array 1 35180-32353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFS010000007.1 Porphyromonas levii strain DD48 JD63_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 35179 32 90.6 35 .....A......G....T.............. TACGTACATCTGTGGAACAGCACCACGATACATAT 35112 32 90.6 33 .....A......G....T.............. GCAATACAAAAGATAAGTAATAAGATACATAAC 35047 32 90.6 35 .....A......G....T.............. CCAACTCAAGAGACACCGCCCCAGAGAGTGGGTGG 34980 32 90.6 36 .....A......G....T.............. TCGGGATGTGGTATCACGCTGAGCATTGACGGAGTA 34912 32 90.6 35 .....A......G....T.............. GTCATTGTTCGTTGTGCTCGTTTTTACCTGTTAGC 34845 32 90.6 34 .....A......G....T.............. CGTTAGGCGCATACCTGATTTATTGCTACTCCCT 34779 32 90.6 34 .....A......G....T.............. GTAGATATCGCTCCACTGCTCGTCTGTCAAGCGC 34713 32 90.6 34 .....A......G....T.............. GAATACGCATAAAGATGTACATTTTTTAACTTAT 34647 32 90.6 34 .....A......G....T.............. GTTAAAGTAGAGCTTGCCAGACCTCTTATAGTGA 34581 32 90.6 35 .....A......G....T.............. TTTTAGTCTTGGGAGGACATTACACTCTATGTAAC 34514 32 90.6 36 .....A......G....T.............. GCATTGTAAACGATAAGACCTACACAATGTAAGTCT 34446 32 90.6 35 .....A......G....T.............. GAAGACATATACAAAGAGGCTGAGGTCAACGGGCT 34379 32 90.6 34 .....A......G....T.............. GTTAGAAATCATAGATGAGATAGAGGATGATGGC 34313 32 90.6 33 .....A......G....T.............. ATGCCTTTTGCTTTTAGCTCGTGCCACTCCTCC 34248 32 100.0 36 ................................ TGTGTGTATCTTTGCCATGAAGTTATTAATTTCTGC 34180 32 100.0 34 ................................ ATCGGCAAGAGCAAGGTGCTCAAACGCAATATAG 34114 32 100.0 34 ................................ ATCTGCTAAGCTCTTGCTGTATGGTATGCGCTCA 34048 32 100.0 34 ................................ AATAACGAAGAAGCAAACGAATCGGCACGCCTAC 33982 32 100.0 34 ................................ TGTTATGTCGCATATTGTCAGACAGCTTATACGA 33916 32 100.0 34 ................................ GGAATCATCGGAAAATGGAAGAGAGATAGAGGAC 33850 32 100.0 35 ................................ AGCGAAAGGTAATGCAGTCGGCAGGAACCACGAAA 33783 32 100.0 35 ................................ TGCAGACTGTCGAGCAGGTATTGTATCCCTGCCAC 33716 32 100.0 35 ................................ TCACCCTTGATGAGCGTCCACTTGTACTTGCGCGG 33649 32 100.0 34 ................................ TTGTAAAGTTTAGCAGCAGGACAGGCGACCGCTT 33583 32 100.0 34 ................................ AAAAGATGATGCAGGCAGAGCAAAGAGCTGCCAA 33517 32 100.0 35 ................................ TCAAGCAAATGGGAATTAAGAACACATCTAAAGAA 33450 32 100.0 34 ................................ AATAACCTCATGGAAAAGCAGTCCAAGAGCCTCA 33384 32 100.0 35 ................................ TAACGCAATCAGGATGCCCAGTGGCTGGTGCTACT 33317 32 100.0 35 ................................ ATCTTTTCAAGCTAAATCTGATTTCTGCCAGATGA 33250 32 100.0 33 ................................ ACTACTCTACTGGAGAACAGATTGAGACGCAGC 33185 32 100.0 34 ................................ GTTGAGTGTTCCGTCTCGTCTAATAACTTGCGTG 33119 32 100.0 34 ................................ TTGCGTTGGTTCTTGCGTTGGGCGGCTCAAAAAG 33053 32 100.0 36 ................................ AGCCAACAAAGTTTCCGGGTAAAAACTCGTCTAATC 32985 32 100.0 35 ................................ ACCACCTACACTGATAGACTCGTGTACAAGTGGGT 32918 32 100.0 35 ................................ ATCGACACACTCAACCGAGTTCCGTTCGATAGCGT 32851 32 100.0 35 ................................ ATCAGGTCAAGATGTAAAAACGACACTTAAGACGA 32784 32 96.9 35 ..........G..................... AAAATAGGGATGTCCTACTATGTAGTCTATGTCGC 32717 32 100.0 36 ................................ ATCATTAGACCCAGCAGCGACAGATTGGGCAGGCTG 32649 32 90.6 33 .....A......G....T.............. TTACATGACGACAGGGAGCGTGTTAGAGGTGTA 32584 32 90.6 35 .....A......G....T.............. AACCGCAAACAACGTAAGATACTTGACAAAGTCGA 32517 32 90.6 34 .....A......G....T.............. AACTTGGAGACGGTGTATAAATCCGCACCAAGGG 32451 32 90.6 35 .....A......G....T.............. TCTTCATCTATTTCTAGAGATAGAACATTACTTCC 32384 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 43 32 95.9 35 GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Left flank : TTTCATAATGAGATAAATATGTATATACTAGTAACATACGACGTAGCTACTTCCACAAAAAGTGGAGAAAGACGACTGCGAAAAGTAGCTAAAATCTGCCAAGACTATGGACAACGAGTGCAAAACTCTGTCTTTGAATGCTTAGTCACCCCTGCACAAAAGGTACAACTAGAAGCACAATTACTTGACGTAATAGATCAAGAGCACGATTCCCTGCGCTTTTATCACCTAGGCAGTAACTATGCTAGCAAAATTAAAACCCTAGGCAAGCAAAAAAGCTTTGATATCGAAGAAGAGCTGATTATCTAAAGAAAGAGTAAATGAATGATGAGGTGCGAACCTTAAGCAAGTAGCGAATCCCCTAGGTAATCGCACACACTATATTTCAAGGAGTTATAAAAGAAATATCTTTGGGTATTGAGGTGATGTCAGTCTGTAGGAACCCACTCGCGAAACATAGCTTTCAAAGTCATAAATAATCAGTATCTTTGTACTGAACG # Right flank : AAAAAATCATTCGTCTCAAGTTTGCCTGAACAACCTCTATATCGATAAGCACCGAGGGGTAAGCGAGCGGCGGTCGAGAGTTCTCCGAGTACCCCACGGAGAGTTGCCCTGTATTCATACTCACTTGCCTAAGCGTAGGCACAGCCTCAGTGAGCTTGCTCTTGATGTCTTGATAAACTGTTTTCATTTCAACAACTCCTTTATGTCGTTAATAACTTCCTGCCGTATCTCTTGCGCCATCCGCTTAGACGCTCCCATAAATGGTCGCTTCGGCATGGCAAACTCTTTTTTGCCATAAACCTTAGCCTTAAGTCCATATTGATGCACCCTCGCATATGGGGCGGTATTCCTAACGACAATACCCTCCTTTGTGCGCGCATAGCTAAACGCATTGGAGAGATGCCCCGTTTCTCCAGAAAGGATTTTCGCCGTTGTGCGCGCAAGACTAAAGCGCCCGGTCTGACCGCTATGACCATACCAAGAGCTTTCAGGTTTTCGCC # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Alternate repeat : GTCGCACCCCACGCGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //