Array 1 62973-62639 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZS01000016.1 Escherichia coli strain MOD1-EC6326 MOD1-EC6326_16_length_88465_cov_36.3405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62972 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 62911 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 62850 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 62789 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 62728 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 62667 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1598-166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZS01000018.1 Escherichia coli strain MOD1-EC6326 MOD1-EC6326_18_length_84875_cov_36.8752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1597 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 1536 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 1475 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 1414 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1353 29 96.6 32 ...........A................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1292 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1231 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1170 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1109 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1048 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 987 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 926 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 865 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 804 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 743 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 682 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 621 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 560 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 499 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 438 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 377 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 316 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 255 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 194 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //