Array 1 16653-16953 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVH01000008.1 Caldanaerobius fijiensis DSM 17918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16653 30 100.0 38 .............................. GAACATACTTTAAGGGCAATCAACATGCTTTTAAAGGC 16721 30 96.7 38 .........................A.... TGAAATTCTATCGGACGGCATCATATGCGGCAACTGGG 16789 30 96.7 36 .........................A.... AGAAACGATAGTATCAAAGACTCTTGAAGGAGAATT 16855 30 100.0 39 .............................. GATGTACTCGGGAACACGATTGAGCAGATGAGTATATTC 16924 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.7 38 ATTTCAATTCCACAATGGTCCGATTGAAAC # Left flank : CCCCAAGATAGATATACGGGTTCCTACTCCCGACCATCCTTGGAAGCAGGAGCAGCAAAAGACACCTTCATACTGGTACGTGGAATCAGACAGAGAGATTTTAGAGGCTCTGAACAATTTCACGTGTGCCTGGCGATAACCAGGCTAAGGATTTTGGGCTTACAGCTTAATTTTATAATAGCTGCTGAATAAAGGTGTGTCAAGGACAAGCGAAGCTTGTTCGCTTTATCCTTGGCGCGCCGAATAAAGCAGCTAAACTTTTCCAGGCTGTAAGCCTTAGATGAGGTATTGTCTTTTGCTAATTAATGGTTATATATGTATCTATATCATATTAATGTAAACTACGTTTAGATTTTAATGTTGAATTTCCATGGCATAATTATGATCTAATAGCTATTTTATAGTAAATATTCTCTTTAGCTATGACATTTTTGATGAATAAATATTGACCTTTTACTATGACATTTTCATTGATTATTGACAAACGAACAATTGAGCCA # Right flank : CTCAGCATATGCGATTGCGACATGGAGGGTTGAACATATTTCAATTCCACAATGGTCCGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATTCCACAATGGTCCGATTGAAACAGTAATGGCATGGCAAGGTTATGTGTAGTTTCGCAAATTTCAATTCCACAAT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTCCACAATGGTCCGATTGAAAC # Alternate repeat : ATTTCAATTCCACAATGGTCCGATTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 17437-17666 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVH01000008.1 Caldanaerobius fijiensis DSM 17918, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17437 30 100.0 37 .............................. GCCTGTAGCTTCTCTTGTTCTGTCATTTGAGATTCTT 17504 30 100.0 37 .............................. TTGAGAGGGCCAACCAAGCACTACAAACAGATCATTC 17571 30 100.0 36 .............................. CACAACCTGAACTGATAGAAAAAGAAAAGTGGCTAC 17637 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 ATTTCAATTCCACAATGGTCCGATTGAAAC # Left flank : AATGGTCCGATTGAAACTCAGCATATGCGATTGCGACATGGAGGGTTGAACATATTTCAATTCCACAATGGTCCGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATTCCACAATGGTCCGATTGAAACAGTAATGGCATGGCAAGGTTATGTGTAGTTTCGCAA # Right flank : CCCCCAGTAAAAAACGCTTATATATGAGGGCTTTTGATACCCTCTTATGGTATAAAATTATCGTCAACCTCTGATGATGTAAAAATGCTTGGATGTTGACACGTTTAATGTTTATTACCTTTTAGTCTATCATAATAATATATTTATGTCAATAGTTTACTGCCAAATCCTGTTGCCATTCTATGATATTGTCACACTAAAAGTATTCTATAATAATGCAAATATGAGAAAAAAATATTCTGAGGCAAGTGACCTTGTGAAAGATTGGCGTAGCGCATCCCATCAAAGTCACTTGCCGATGCCGTTGAATTTTTTCAGAAGCAACCTATTTGTAAATATTATCAAACAACGACAGTTGACTGGTTTCTGGCATGCCTTTTAAACAACCGTGCTTCATCAATATCTCTATGACATTTCTGCTCAATTTCGCTCTTTCGCGTAAATCTTCTATCGAAACAAATCTGCCCTCGCTTCGAGCTTTGACGATGTTTTGCGCAGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTCCACAATGGTCCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 27070-28034 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVH01000032.1 Caldanaerobius fijiensis DSM 17918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 27070 30 100.0 38 .............................. TTGCAAATTGCCTGTATATGAACCCAACGGAGCATTGA 27138 30 100.0 37 .............................. CGTACCTGTTCTCATCTGAACTCTGCATTTTTACTCT 27205 30 100.0 37 .............................. CCACATTTGCTATTTCCGTTGATGGCACGTCCAATTG 27272 30 100.0 36 .............................. TTGCTGTGTCGCAAAGTCAAGAGCTTCATTGACAAT 27338 30 100.0 37 .............................. ATGAGTCCGTACTTTTGCGCCAACATCGCCGTATACA 27405 30 100.0 36 .............................. TAGTAGCTGTTTTGATCCCCTCATTAATTACTATAA 27471 30 100.0 38 .............................. TAGCAGTTTTTCCCATTCCAGTATCATCAGCAAGTATA 27539 30 100.0 36 .............................. TCCTTCTTTTTAATAACTTCTAATTTCCCATACGAT 27605 30 100.0 35 .............................. GTGCAAGTTCAAGTGCTGCTGGTGCTAAAGCATCA 27670 30 100.0 36 .............................. GAACCGTACTGGTTATTCCCTCGCGGCATAAACCCA 27736 30 100.0 37 .............................. GTGAATTTTGGACATGCCTTTCAACTCCGGAATTGCG 27803 30 96.7 38 ................A............. AGCTGTATAATCTCACCTGTTGTTGGATCTACATGCAT 27871 30 93.3 37 ...........G...A.............. ATAGCAATGGATGGAAGGAATATATTGCAGGCCTAAA 27938 30 100.0 37 .............................. TTGGTATATTTTACATCGCGTGCCCAGTTAATGAGTT 28005 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.3 37 GTTTCAATCGGACCATTGTGGAATTGAAAT # Left flank : TGAGGTTATGAGCAATGTTGATAAAAAAGAGGTTATGCAGCAATATATAGAAGAGCGTTCGAGGTATGCCAGATGGGTAGAATGGGAAAACATGTCACTGGAGAGGATATTATCTGAGCATCACCTTAATTTTCGATGCGATTTTGAAGGGACCATAAAACTTCTGCAGGAGATACCGCTGGATATTTATGAATTTCCTGCTTTGGAAGAGATAAACGTAATAGGAATGAACGAAAAAGATGCGTAAAACACACTATCAATTAGACAAGTTTCGTGTATTCAAGGCGATAATACGTCAGGTATATATGGTATATACTATCACAATTTATGGAGAAGGGAGTATCAAATATTGACATATATATCTAAAGTATGGTAAAATAAACTTTAAAGAGTATTAAGTTTGTCAACGGATGAGAATTTTTGCATTATCTGAGGTTGACGAGAATTTTATACTGGGAGAGGGTATTAAAAACCCTCATGTTATACGTGTTTTTTAGTGG # Right flank : TCAGAAAAGCTGATTGAATATTTATTTTAATTTAAAAATTTTTACAAACTAAATACCTCACGTAAAGCGAGGATTGTCAATATTTTATGAAAATGTCACCTTAAAAAGGTCAAATAACCGAGTCAATTATCGCATTTCAAAATGCTTGTACAGCTGGCATTTTGAGATTAAAAAATTAAATTATTTTGTACCTTTTCACTTTTTCCTGTACCATGAGATAACGCACCTCGTTTTTCATAGTGACATTTTGTTAAAATAATTTACAAGATGACATTATCACAACATAATCACCCCCACGCAAAGCAAGGACTTGAAACGAAAAGGCTGACATGATATAATATGGCCTCGATAAGGTGTTGGTGTGTTTGTATGCATGAGGGTATTTTTTTATTAGCAGTATTTTGGATTAGCCTGTTGGCGAGTATTTTTTTGGTTACAACTACATAACCCACTTTATATGGGAAATTTTCACTATTTTTCTTCTGGTAGTGATGTTTAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCGGACCATTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 57518-56957 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVH01000001.1 Caldanaerobius fijiensis DSM 17918, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 57517 30 90.0 38 NNN........................... GAAAACATGTATCGATATTGATACACTTGAATATAGCA 57449 30 100.0 33 .............................. CAGGCTGCAGGTGCAGGCCTTAGGTTCAGCCTC 57386 30 100.0 35 .............................. GGAATTTATTTCTAAACTTTTTGTACTCCTTTGGT 57321 30 100.0 37 .............................. TATCTGCCGAAAAGCCTTCCGATGAATTCATACATTT 57254 30 100.0 38 .............................. TTTACAAAAACCGCTAAGAATTCATCTATTGTTTTTGC 57186 30 100.0 35 .............................. TGCCTCCGGCGAAGGATAAGAAGGTAAAATGTGCG 57121 30 96.7 38 .................G............ CACGGATACTGCTTTTGGAACACAGCTACGCCGTGCTC 57053 30 96.7 36 ............................T. TTGACGACGAAGCAATCCACCGCACGTGGATATTTC 56987 30 90.0 0 ...........G.............T...C | A [56962] ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.0 36 GTTTCAATCGGACCATTATGGAATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAAAGGTAGTAGTTGTAATTTCCATATACAACAGCGTTTAGGTGGAGTGAGGCGTGTCACTAAAGTTGTCAGGGTTGGTATTTATTCCACACATGGTTTGCAGCTAATACATCGCTAATGTCTGGAATAGTAGTCGGAGTTTGATTAAAGGCATTAAATTGTTTACTAAAAAAAAATCACTTACCTATAGAAAGGTAAGTGATTACATGTTTTTGACAACTTGTTTTTTGTAGCTGTGAATAACTACTATAATCTGCTTCGATATTGGTTTTAATGCGCCTGGCAGGAATTGAACCCGCGGCCTTTTGGTCCGGAGCCAAACGCTCTATCCACTGAGCTACAGGCGCGATGCTTATTTTAAGACTTCATTTTTTGCTTTGCTAACATTACTTATTATAACATATTATAATTACTTATTATAACATATTATAACATATTTATGATAAAATTTCACCTTCTCCTGACCGAAATCTGAGGATTCAAAAGATCATATCCTAAAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCGGACCATTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 58613-58775 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVH01000001.1 Caldanaerobius fijiensis DSM 17918, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58613 30 100.0 37 .............................. CAATATCGCCATGTATTCTTTCCAGCGAAATATCAAA 58680 30 100.0 36 .............................. TTGCCCTCACAGGCATACATTTTTCATCAAGCAGTT 58746 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 ATCTCAATTCCATAATGGTCCGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTATAGC # Right flank : CCCCAGTAAAAAATACTTAATATATGAGGGTTTTTGATACCCTCATATGGTATAAAATCATCGTCAACCTCAGGTGATGTAAAAAAGCTTGGATGTTGACATCTTTAACGATCATTATCTTTTAGTTTATCATGAATAGTTATTTATGTCAATATTTTACCACCAAATTTTTAGCCCTTCATATTTTTTTACGTCTGTAATATGTTTTATCAACTTATAACATTCCAGCCTTATCAACCTTCTATAACTTACATTTCTATCTAAGTCTTTATGGTGGATTATAGTATTTAACTTTTCATCATATTCTTTTAAAAAAATAGCTCTACCTTTATCACTTAAATAACACATATTGAGGTCTTTATCAAAGTGTTCCTCTTTTATCATGCCTTCATTTATTAACTTAAATATAACCCTATCCACGATTATCGGCTTAAAAACTTCACTTATATCTAAACTCAAAGAAAATCTCCTCTCACCTGGTTCGTGGAGATAACTTACAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCAATTCCATAATGGTCCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 3 70343-68497 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVH01000001.1 Caldanaerobius fijiensis DSM 17918, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================================================================================================== ================== 70342 30 100.0 35 .............................. AGGGTTTTTTGAAACATGCAGGAAATATTCTCAAG 70277 30 100.0 35 .............................. GGTACTCCAGTGGCAACCTTTACTCTTGCGGTGGA 70212 30 100.0 37 .............................. TGTTTTAGCTGTCCGAAAGCTGCTGCCGATGTTTCAG 70145 30 100.0 36 .............................. ACAGGGAGATTCTAGCATGACTGCATATGAGTACAT 70079 30 100.0 38 .............................. TTCTTTGATAAAAACATAATCATCAAGTTTGCTTCTCA 70011 30 100.0 36 .............................. ACAGGAAGATCCAATGTGGCCGCTACCATCGCGGCA 69945 30 100.0 36 .............................. AATAAATACTAAAACAATAAAAGGAGGTGTAGAGCT 69879 30 100.0 36 .............................. TGTATATTAGCAATATCAAAAAAATCTACCTTACTA 69813 30 100.0 36 .............................. TCTATTTCAACAACATTATCTTCGTACACATAACTA 69747 30 100.0 36 .............................. TCAAATATTCCTCCCTACTGCGCTATGATCAAAAAT 69681 30 100.0 36 .............................. AAAGAGAGTAATAGAGCCAGGAGCACAATGGGAAAT 69615 30 100.0 37 .............................. GCGTTCTGCGTGAGACCAAAGTGCCAAGCGTTCTCGT 69548 30 100.0 37 .............................. TGGCAATATCAATCCCTGGATCGGTTGGAACTGTGCC 69481 30 100.0 37 .............................. AATGACTGAAGGTTTGCATAAAGGTTGTCGAGAAAGA 69414 30 100.0 37 .............................. AGTTACTTGAGGAAACGGCAGCTTGAGGAACTAGAGG 69347 30 100.0 36 .............................. TGTATTAGATCAAGCGGGCATAGACTGGGACTTTGT 69281 30 100.0 37 .............................. CAATCCTAGCCCAGTAACCATCATCCGCTAACTCACT 69214 30 100.0 36 .............................. GGGCTAAAGGTTATAACAATATAACAACCGAGCCAT 69148 30 100.0 37 .............................. CAATATGGGCATTTGTATTTGTCATTCATCACTTTTC 69081 30 100.0 37 .............................. CAATATGGGCATTTGTATTTGTCATTCATCACTTTTC 69014 30 100.0 37 .............................. ATGGCTCGTGTTGGAATCAATATCTTTCCTTTGCCTT 68947 30 100.0 36 .............................. GACTGAGAAAACACTTTTTCGAGTGTTTATCCCAGT 68881 30 100.0 35 .............................. TAAAAGTTTCACCCCCTTTCAAGATTCTTCTACAA 68816 30 100.0 35 .............................. TTGCTGGCAACCTGTATTATTATCCTCAGGTCTCC 68751 30 100.0 195 .............................. CAGGTTACAATGAGCGGCATGATTGTGCCGCTCATTTTAGATTAACGACAAGCACCACTTTTTGTGAAAAGTGGTGCTTGTTTTGCGTTTGGATATAATCTGATAAATATTGAATAAAGATCATGCGAAGGTGAGGAATTCTTGCCTTTTTTCCATAGCCATGAAGTTTCAATTAGACTAACACTAACTAATATT 68526 30 70.0 0 A.....G.TCA.T....G..........GG | ========== ====== ====== ====== ============================== =================================================================================================================================================================================================== ================== 26 30 98.8 43 GTTTCAATCGGACCATTATGGAATTGAAAT # Left flank : GACGCAATTAGGGATTGATGAGTTTGTAATGCTAGAACCAAATCTTTTGGATAAATGGTCAAATATACCGCCTGATGTTCATTTACTGGATGATCATCTAGAAGACGTGTTTAAGTGGATTGATAAAAATGCGTGTGATGGAGATTATGCTCTGGTTCAGGGCGATTATGGAGCTACGTTTATGGTCGTAGATTACTGTATGGCCAGGGGGATAATACCTGTGTATGCTACTACCCAGAGAAAGGTTAAAGAGGAGGTATCAGAAGATAGCATTATTACTACCAGAGAGTTTAAGCATGTTATGTTCAGAGAATATAAAAGACGTGACTAGTTAATTTGAATGAGGGTGTTTACATAGTTACGTAAATATGGTAAAATATAATTTAATGGATATTGAGTCTGTCAACTCTTGAGGTTTTTTGCATCATGTGAGGTTGACGAAAAGTTTATACCATGAGAGGGTATTGAAAACCCTCATTTTATGCATATTTTTTACTGGG # Right flank : AATTTTATGCTCAATGTAGAATATAAACTTTAGGATATATCAGTCAATGGAGGATTTATTATGAAAAACATAATGATCTCTTTAATTGGGCGTGGGAGAAAACCAGATGGTGGTAAAGGATATATAAAAACGAGATACAGTTTTGATAATGGTGAATATATAAGCGATGAAACAGCTTTTTTTGGTTCAGCATTATATAGATACTTGGTAGGTAGAGGTTATAATATTGACAAGTGGATTGTATTCGGTACAAACACCTCAACTTGGTCTGAAATTATTGAAGCAATAAATAGCGTTCAACAGGAAAAATTAGAAGAGATGTATTACAAAGTTTTAGCCGAGGAGGAAAATGGAATAACTGACACAACGTTGAAACAATGGGAACGCGATATAAGCAAATTTTTACATGTAAATCTTGTCGCTGTAGATCCTTTAGATTATAAGGCCTATATCAACGAGCTGTTAAATATTATAACTATCGGAGATGAATACAAAATCTT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCGGACCATTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //