Array 1 479134-477371 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 479133 30 100.0 36 .............................. AGAATGCCGTTTTAGGTCCTCTAGGTATTAAATTTG 479067 30 100.0 37 .............................. CCCCAGGCTAAAGAGATATATCGAGAAAGGTTGGGTA 479000 30 100.0 36 .............................. ATCTAGAGACTGCTGAACCTCCTCAGAGACCAGTAA 478934 30 100.0 39 .............................. CAAAGATATACGAGAGAAGAGTGCATTAAAAGGGGACAT 478865 30 100.0 36 .............................. CTACAAATCATGAAAGCCTTCGAGTCCCTGGGAATA 478799 30 100.0 37 .............................. ACAACGCTCACCGCTGAAGAACTACGAAAGACGGGTT 478732 30 100.0 37 .............................. GTGACTCTCTTAAATTGTTAAACAATCTGAAGAAAGT 478665 30 100.0 37 .............................. AAAGAAAGAGAAAAATTCGAAAAACTAACGGGTATAT 478598 30 100.0 35 .............................. TGATGATACAATAACGGATAATTATACGAAAGAAA 478533 30 100.0 38 .............................. TATACCTCTCTGTCATAGAGGTATATAAATCTTTCTGG 478465 30 100.0 36 .............................. TATATAGAAACTATTACTATAAGCCGTAAACGTTCC 478399 30 100.0 36 .............................. TTCACGTTTTCCCTAGCCTGACCGTTAGACACTCTC 478333 30 100.0 37 .............................. CTCGTCTTTTTGTAGAAGCTCTTTCACGACTTCTTCG 478266 30 100.0 36 .............................. AGGTACTCCACCACCACCAACGGGTGGCGACGGCGG 478200 30 100.0 36 .............................. ATAATAACATACTATCGTTAACATCAAATTCAAAAA 478134 30 100.0 36 .............................. ATAATAACATACTATCGTTAACATCAAATTCAAAAA 478068 30 100.0 37 .............................. AAAGGAGAGTGACCTCGGGAGAGTCCTTGCCGAAGAC 478001 30 100.0 36 .............................. AAAAAACAATTCTTCAGTTCATGCTCATACTCATAG 477935 30 100.0 36 .............................. ATTGTATACTTGTCATGATAATCCTCACTTAGATTA 477869 30 100.0 36 .............................. CATTAACACTTAACACTGCTACATATAGCGTGTCGT 477803 30 100.0 38 .............................. AATAAGAGGTTGCCAGAAGGGATAGTGATACAAAGCAT 477735 30 100.0 38 .............................. TCCTTTTCCAATTATCTATATTTTGCTCTTCTTCTCTG 477667 30 100.0 37 .............................. CAAAAGACGGGTTTCAGTCCCGTCAATGATCAGGATG 477600 30 100.0 37 .............................. TTTTTCTTACGCCGATTAGTCTTTCTCTATGTTGAGG 477533 30 100.0 37 .............................. GAAGAGCTAGAGCCAACCCTAACCTGATAGCCGAACT 477466 30 100.0 36 .............................. TATGGGAGCTACGCGTTAGAACCAGGTCAGCCTCCT 477400 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 27 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : AGAGGTAATAGTTAGTTTGTGCCATTGCTGACTCCACATGTCTCGAGGATGACTTGATCTCAACTACAGTCCTGTCCTCCTTCCTAAACGCGTCTATCTTCATCCCATCTAGGGAGATTGGTAGTTCGTCTCCATATATCTGATGTATCGCTCTGCCCTTCTCTAACTTCGAATGTCCCTCGAATGGAGTGACGTGTCTAGCCATGTACCAGACTTCACGGGGGCAAACCTTTGAGTACCAGATCAAGGTACCCGTGATCACAACGTCCGGTCTCAGGTAAATCGACATAAAGAATAGTTGATTTCTGTGTTTAAAAATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAACGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAGAATTAAGCAGG # Right flank : AATGTGACAACTCTCATTCTTTATCTCCTCCTAGCCCAACAGTTGTCTCATCTTGGTTTCCCTCTCCTGTTCGGGTAGCTTGGCATTTGAACTATATCTACTAATGACGTACTGATAATGTTGTGTTAATAGGTTAAAATATTTGATAATATTAGTTTTTATTAAATAAGGACTTTTATTTTTAAACTTGTTAAATGTAATGATTTGAAAATGAATAGGTAAACTGCTGAGACGGATTACTGTTATGATCTGTGTGCAGTTAGGCTACCTTCCGCGGCTGTAAAAGTCCTCATGTCTCTAAGTAACCCAGGGAAGTCACGGATGTGAAAGGGTGAAAGTTCAGAAGATATAAAGTTTATCAGATTTATATCTTAATAAATGTATTATTACACTGTATTTATACTCAGTCAGGCCTTAAAAGACAAGGTCTACGTTTCAGATCTACACTACCAGAGACCTCAATGTTGGCTACAAAGACGCTCATATCCAAGGTAGATAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 507209-508452 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 507209 25 100.0 40 ......................... CTTATCATTTGATTTGTATAAATTGCAAGTCCGTTAGTTT 507274 25 100.0 42 ......................... ACTTATCATTATACGTATCCGTAGCATACTCTAAAAACTCTC 507341 25 100.0 38 ......................... TTTATTTCTACATCCTTAAAGCCATATTTCTTCTGAAA 507404 25 100.0 40 ......................... CCATATCCTTGGCTGTAACCTTCACCAGGATCCCTCTTAA 507469 25 100.0 37 ......................... TTAGCACACCAGGCTCCTTTGAGAAACCGCTCTTCGT 507531 25 100.0 42 ......................... AGGGACGCCTGGGAGGAAAGCCCTGTCCAGGGGGGTAACCAT 507598 25 100.0 40 ......................... TGATGATATAGATGAGTTCTACTACCGATGAGTTTGAAAA 507663 25 100.0 37 ......................... CGGTATATGCAAACTTCTTCCTCATGTTAGAATGATG 507725 25 100.0 39 ......................... CCGGATAGCACTGCCTGCCGTAGAGGTTCGTAATTGAAC 507789 25 100.0 35 ......................... TCCTCTAGCCTTTTCTTTACATCAATCTTCTTCAA 507849 25 100.0 38 ......................... ATATCGTAGAACAGTGATTTTTCGTTGGTCTGAGGCGT 507912 25 100.0 35 ......................... CTACTTTGTGCCATACGATAAGTTCATGTCATTAG 507972 25 100.0 39 ......................... GATAAGTCTTACTATAACAGAGGTTTTCCACATACGTAT 508036 25 100.0 42 ......................... CCACTACTATCGGATCAAATAATAAAAAAGGATCCGAAATGT 508103 25 100.0 41 ......................... TTTATTAATTTCATTCCGCTATATTTAGTAATTCTGTATTT 508169 25 100.0 40 ......................... ATGGGTATGCTCAATTGGGCTTCAACATCGAAGAGCCTTG 508234 25 96.0 41 ..........G.............. TGCTCATGGGCGGGGAGGTTTGCGAGAAAATTAATGAAAAC 508300 25 96.0 38 .................T....... GAATAGTGTAAATTATAAACGCTACTGTATCGCTCCCT 508363 25 88.0 40 .........TC......T....... AAACGGAGTTCTTCGAGGCTTTGGCTAGAGTTGGTTTAGG 508428 25 80.0 0 ...A...T.TC....A......... | ========== ====== ====== ====== ========================= ========================================== ================== 20 25 98.0 39 GTTGAACCCATAAAGGGATTGAAAG # Left flank : AGGTGGGCCTAAGAGGTCAACGCTGAGTATTTCCTTGTCATTTCAGCGCACGAAGTACAATTGGAGTGTTCCATGCGGAATTTAATGGACTTCTATATATATGTATATACTATGCAATTTAATTTAGTTTCTGACTATATTTTTTTATATATATATAGAATATATCTCTTTTAAATTTTTTTATAAGAATTTCAAAAAAGAACTAAATTCCATCTCTAAAAACGAACCGTTCTGATTGTTCTATATAACCTATTTTCTCGAGTTTCTTACAGAGTTAATAAATGATGGAGTTCGAGTCTCCTTGCGACCGAAACGAAATCATTTCGTGAGTTTTACATTTATAAATAGGTGAGTGTCTTTCAACTAGTGAAAAACATCATGCGACCAGCGTAGGACGTCTTGAGGGGAGGGGGAAAGGTCGGATGGAGAGTGGACGGAGGAGACGTAAAGTTTATAGGGGGGAAAGGAGAAATTAAAGGTAGAAGTAAATAAAACATTCA # Right flank : GTAAAACATGTTTATTCCAACTTGTATCTGATTTCCCCTCTCCGTTTAACCTAGAAATGAGAAAGTCTGTTTCCGACTGGTTGTGAGCTTAACGTGGTTTGAATGGTTTAACTTGGAAGTGGATTGAGAACGGTTCTTAGAAAGATCTTAGGATGTTAGAATACCGTATGCTCAGTCTTTATAAAATTCTAATCAAAAAATTATTATAGTGTTTGCCATGCCTAAATCCATAAAAAATTTTTATATTTCTGGTATATTTATTCTGTTATCTACAACTCTTTCTCAAGAAACCGAAGTGAGAAGAGAAGAGTCCACTACTCACCCTGATGAAAGTCCGAGGTGGAGGCGATAACTCATGTACCTTGGAAACCCCTGTCCGCCAGGTTACATCAAGGTCGATATAGCTTACCCACCTTACTATGTCTGTTTCCCGATCTCTCAGGGGAATAGAGTGCGAGGGACCTCTCCCGTACAGCCACAAGCGAACCGGTGCATGGAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 521227-519926 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 521226 25 100.0 39 ......................... TTTACTAATAGATTACGCATCAAAGCGAAGTAGCAGTAC 521162 25 100.0 39 ......................... TAAATTCTGAAATATTATCGATTCAGCAACATCGCATTG 521098 25 100.0 39 ......................... ACTATTTTCTTCTTTACCTTAGCTTTCAACGATTCCGAA 521034 25 100.0 39 ......................... TAACCTACTCCACTGGTTATTGGCAAACATGAATCGAAT 520970 25 100.0 37 ......................... TCTAACCTGTTTTTGTTCTTTATCTGTAATTTTTACA 520908 25 100.0 41 ......................... AACTCTTCTTCACTTGTAATGATGGTGCCTTCAGGAAGTCT 520842 25 100.0 38 ......................... AATAGTAAAATCACTAGAGATGTAGACGTAATGACTAA 520779 25 100.0 38 ......................... AGTATACCCCCAATCAGGTTGGAAAGTCACGAGAGTGA 520716 25 100.0 36 ......................... GCATCCTGCACTTCCGTTCGCTTGTACAGGTGAGCA 520655 25 100.0 41 ......................... TTCTATGTTATTCTCTTCATGAATATGTGTTTTCATGATAG 520589 25 100.0 39 ......................... AGACTGAGGAAGGTTTGATAGATAACGTCTTATCAACAT 520525 25 100.0 39 ......................... TAAAGAGGAGCGTGACAGCTAACTCCTTCCCCGTTTCCC 520461 25 100.0 38 ......................... AAGAATATTGTAAATTTTAAGAAATTTTTTTTAAATCT 520398 25 96.0 39 ..........G.............. TCGCTAATTCGTTAATAGCATCTTGCAATTCTTTTTCAT 520334 25 96.0 40 ..........G.............. GTACCTTTGAATCCATGTCAGCCTTGACTTGGGTAATTAT 520269 25 96.0 39 ..........G.............. ATTCTTACCACACAGTATACCCTTGTATCGTGCTTGTAT 520205 25 100.0 39 ......................... TATTTCGAGAGTGCCATGCTCGTCATACGAAAGGAAATT 520141 25 96.0 41 ..........G.............. CTTGTGATGCCAAGCCCTCTTCCCTCGAGGGTCACTTCCAG 520075 25 96.0 37 ..........G.............. AACTCTGGGTCGTCTGTCTTGTTGATACATACGTCAT 520013 25 88.0 39 ..........G...A.........A AAATTTGGAGTAACGTTACTGATTTTATTAAAAAGACTA 519949 24 72.0 0 ........T.G....A...-..GGC | ========== ====== ====== ====== ========================= ========================================= ================== 21 25 97.1 39 GTTGAACCCATAAAGGGATTGAAAG # Left flank : TTTCTTCGGTTCTTAATCGTTTAAGAAGTCCGCTCAATATTACGTGTTAGGTGTTCTCCTATGACCAATTCTTTGAGAAGAGCGTTACGAGAGTGAACTATTATTTTATGAAAGTATAGGAAAAAGAGTTAAGATTAACATAGTATACTATTTAAAAATATTGCTAGAACTTTATTATATAAAATGAATATAGAAAAGAGGAAATTCCCATGACTGAAATCTCGAATGAATTTTTTCCTTTTCCTGAACTTTCAGATCCGGTTTATTCATAGAGTTAATAAACGAGGAAGTTCGAGTCTCCTTGCGACCGAAACGAAATCATTTCGTGAGTTTTACATTTATAAATAGGTGAGTGTCTTTCAACTAGTGAAAAACATCATGCGACCGGCGTAGGACGTCTTGAGGGGAGGGGGTAAGGTCGGATGGAGAGTGGACGGAGGAGACGCAAAGTTTATAGGGGGGAAAGGAGAAGATAATAGTAGAAGTAAATAAAACATTCA # Right flank : TGTCTCGTTTTCAGGAACGCGACCTTAGCCAGTTCCATCTTAATAGGTGCTGATAGGTAAGTCGTTCTGAAACGTGAAGGTTCTCTGCTGTCAGGCAAGACTCTACTCAGGAAATATTTACCCTAAATACCTCTGTTCCCCGTTAATGGCTTGCCGGGGATACTGACGTGGATGTAACCCAGAGAGACAAGTACGTTTTCCGAGGACAGCGCCCAGACGAGCTTAAAAGTCGTTGAACAGAGAATATTTCATGGCAACTCTACCACTTCAGGACGTGATAGGGGTAGTTCTAATAATAATCGTCTCGTCTATCTCGTTATACCTTTCTGTCCAGTTGATTAAGGAGTTGAAGGGGGACTGGAAGTCAAGGGTGAACAGTGAGCCAAACGAGAGGGTCTGGTTGTTACTGGAATAGTCTAGCAGTAGGGTAGGGGTTGAGTGAAGCTTGGAGAAAACCTCCTCATTATAAAACGGACGAAATTTTTTATGGCAATATAGAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAAAGGGATTGAAAG # Alternate repeat : GTTGAACCCAGAAAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 562486-561516 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================================== ================== 562485 25 76.0 218 .......T.....T..AG..A...A CGATAAAGTTCGAATTTCCTTGCGACCGAAACGAAATCATTTCAGGAGTTTTACATTTATAAATAGGGTAGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAAAAGGGTCGAATTATGAGGTGATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAAATGAGATTGAGGGTAAATAAAACCTTGA T,C [562461,562481] 562240 25 100.0 38 ......................... ATAGCCCAGGCAACACTTGCAATGCCACTCTTCCTAAT 562177 25 100.0 36 ......................... TCCTCGTCGCACCGACGGGGATAGGAAAAACTACTA 562116 25 100.0 36 ......................... TCTTTCAGTCTGACAATTCCCATAAAAAGAAAATCA 562055 25 100.0 40 ......................... ACAAGATAGGAGATACCAGAATTTATCTTCTTTAGGTTAT 561990 25 100.0 40 ......................... TATTCTCTTTCTCTTCATCGCCTTCCTTTAGACCCAGTTT 561925 25 100.0 38 ......................... TATTGCTTGCCGTAAAGATTAATGGTCATCTAATCACC 561862 25 100.0 39 ......................... ACCTTTCCTTCCAACAAATGATCTGGAAAAACGTAATTC 561798 25 100.0 39 ......................... AATTTAACAATTTTATTTCCTACTTTTATTTGAAGGTTT 561734 25 100.0 40 ......................... AAATATCGGATATTATACTTATCGTGATAATCGTGATTTA 561669 25 96.0 40 ..................C...... CTCCTAAACGCACCTATATGATAATCAACTTTAGACTCTG 561604 25 100.0 39 ......................... TTATTGACGTAATTTATGTCCTTCAAATAAAGGACTCTG 561540 25 96.0 0 .......A................. | ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================================== ================== 13 25 97.5 54 GTTGAACCCATAACGGGATTGAAAG # Left flank : GGAGAATTCACGTCAACTCCGTAGAACTATTATGGCCTAGGGGTCACTCAAGTCCCTCGTAGTGACCCCTAAAGTCTCTCGTCAGAGTTCATGTACCCGAACCTCGCTCCAAACTCCTTCATGAGCATCATGGAGTAACTGCCAGCCCTCCAAGCTTTGGATCCTTGAGCCTTGCGATGTTCGTCCCACCAATAACCCAGCTAGACCTTACCTAGCTCTCAGGACTTGAGGAATGATATCCTTCTGCGTGAGGTTTGAGTCAGTTATATACTAGAATGTGACATAAATATGTATCAAATGCAATTTTTTTAAAAAACAGGTGTTCCTTCTAAAATTGCTGTTTACCGAGGCGAAGAGGTGTCCAAAAGACTCATCTTTGTGAATATTTTAAAGAAAGTTAAATATTATGTTCTTCTAGTTATTGAAGTAATTTCTAGGTTTCGTGTATGCAGTGAGTATTCTAGAAATGAAGAGCTTCGATGAATAGATTGTACTTAATA # Right flank : ATAACTTCAAGTTATAATTACACTTTCATGAAGTCATTGGATTCAAATTTATCAACGCTTTACTCGATTTTTGCATACTCAGCAAAATACGAAGCAATGAGAAAGATATGCGGTAGAAGTGACCTAGATAATTGTCTGGGTTACTTAACAGAGGAGTCAAACCTTTACTCCTCAATAGACCCCGCTTTAGGAGTGTTGAGTATAGGCATGGGAGTTGGAACTCCGATAGAAACCGATGAGAAATTTTTCTCTACTTTTTTGCCCATTTCGGGTTTCCTACTTAAGGTTACGGGTAAGGTGAGTAAAATGGGAGAAACTCTTAAATCCTCAATTTTTCAATAGCATATACTTTAAAGGATATAATAAAAAGTCAAAAAGTAAGTAAATACGACGTCACTGGGTTTTTAAGGGACGGGATAGACATGTTCTTCAAAACTACATCTGTAATTGAAAATAAGGATAATAGGATAGGGATTTCAGTAAATGCTACAATATCTTCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 5 570977-571401 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 570977 30 96.7 35 .....................A........ CCTCCTTCATCAACTGCCACGATGTGCATGACGTC 571042 30 100.0 36 .............................. AGGCATGGAAGGAGAACTTTAGGCAACCATGCATTA 571108 30 100.0 37 .............................. TTCCCCGTTAACTGGGGAGTTTTCCGAAACCATTTCG 571175 30 100.0 36 .............................. AAATCGAGTTCTCTTCACCTCCTTCTCTTTCCCCCA 571241 30 96.7 35 ........A..................... TAATAGCACTAACGATATCAACGAAGCTAATATAT 571306 30 93.3 36 .....C..A..................... TCACATATATGATTGCAGACGTTATGGCAGTATGTG 571372 30 76.7 0 .....C..A.............C.C..TTT | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 94.8 36 GTTTGTAGCAATCCTTAGAGGGTTTGAAAC # Left flank : GCGCTGCGTATCCTCTATCCTTCTTGTTAAAATCGAAACACTTCCTAATTAATCCAGCTTCTATAAGTCTATCTAAGATCCTGGAAAGCGTCTGAGAGTGTAACCCGGTGGCGTCTTCAATTTCACTGAACTTAACACAGGAACCCCGAGTCATTATTTCTTTTAGAACCCTGACTATCCTTTCATTTTTGAATAATGGGTTCTTTCATTTTTGAATAATGGGTTCTTTTTATCATTTCTTTTCATAAAATATAAAATAGAGGACGAGATATATATAATTTTTTAAATATCTTGACTCACTAATGACGTGAGTAAGTTCTATTGATATAAATTCTTTATATTTAGGTACCATGGCTTAGTCCAAAATTTTTAAATGAAACGGTAAGTTCTAGCGTTATTTAAATCTAGGAAGCGATAGGAAGATATCATTTTTTTAGAAAATTTTTCAATGAAGCTATATAACACTTTTACAGGATAAACACGAATTTTCAGGGGAGCTC # Right flank : TGTTCCGTGTATTTGAAGTAACCAGGGTTCCCACCACCTGCAGCGCCAGGAGTCTTTATTGGCATAAATACAGCAGCGTGAGTTAACCCCCCATGACCCCGACTAAGACGAACACTAGTAAGAATAAGGAAAAGAAGATGGTCCTCTTCATGAGATGAAGAAAAACGCATCACGTTTATATGTGAGAACTACCTCTTCGGCCTTGTGCCGACGTACCCCTGATACAAGTTCCAAGCAGAGATGGAAAACTCGAAGATGGTATCACCCAAGATGAGATACGATATCAATGAAGGCGAGCCTAGGTACAAGTAAAGGGATACCACGAGAGTTGCTAGGGAAAGCTTGTACAGGAGTAACCTCCACGTTGAAGAGGCTATCTTCCTCAGGAAGAAGTTACCCTCGTAAGCGTTTCCTACCCTCGAGAGGGCCATCCTGGTGGTGAGGAAGTCGTCGAAGTGGGCTAAGTAAAAAGCGAAGATCTCGACCCACAATTACCTCCT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCAATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 582625-576370 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 582624 30 100.0 37 .............................. TTTAACCTCATCACTAGAAGGGACGCTTCAGCTTCGC 582557 30 100.0 36 .............................. GATTTATTCTCTCGAATATCGATTAAGGAGTTGATG 582491 30 100.0 38 .............................. GAAAGTCCTCTTCCTCCTCCTCCTCTTCAGAAGAGGAG 582423 30 100.0 36 .............................. TTGACAATCTTATTGACAAGAGGTGATCTTGTCACA 582357 30 100.0 37 .............................. AAAAATACGGAATAACTTATCGAAACGTTCAGTTCTA 582290 30 100.0 38 .............................. AAGAAGATAGATGTAACTGAATGGGCGGTAAATAGCTT 582222 30 100.0 36 .............................. TCCATAATGGTTCACCGATATGATATCAGAATCTAA 582156 30 100.0 38 .............................. AGGGGTACATCTGTGCTCAGGAGAGTTGTCAGTAGGCG 582088 30 100.0 37 .............................. ACGATATACGTGTTTATATTATGGATTTAGCGGACGA 582021 30 100.0 37 .............................. TCATAAACTCCTTCTCACCAGTCTCGGCAAATGTCTT 581954 30 100.0 35 .............................. TATTACAATTGCAACTAGGGACGACAATAGTACGT 581889 30 100.0 37 .............................. ATAAAAGAATCCGTGATACTGCTACTCTCATAATACT 581822 30 100.0 38 .............................. TCATCAAGTGTGGACATGATTTGGAGTAACTGCATTCT 581754 30 100.0 36 .............................. ATGAACGGCCTAAAAGGCATATTACAGAAGTAGAGC 581688 30 100.0 37 .............................. GTAGAGCTGTCGAAGGAGCTTTTAGAAATATATTCAT 581621 30 100.0 36 .............................. TCGCCTATGGCTATAGAAATCTTGAAAGACATATAT 581555 30 100.0 37 .............................. ATACATGAAGTCCGTTACATTTGCGGGAAACGGGAAA 581488 30 100.0 36 .............................. CAGTACTCTTTGACTATTTCAAAAAAGTAAGGACGT 581422 30 100.0 45 .............................. AAGGAAGAGAAGAAATACACATGGTACGTAGTAGAGCCGAGCCCG 581347 30 100.0 36 .............................. CAGAAGTTCCTGATGTTAATGAAGATACTTCCGAAG 581281 30 100.0 36 .............................. CATCTACCAATAACGACTTTCCCGTTTGGTTAGGTG 581215 30 100.0 37 .............................. TCCATATCTCTCTCCCTGGACAATTGTTAATGTGTAA 581148 30 100.0 37 .............................. AGGCGAATAGCACTACCGTTAGCGTTGATAATTCTTT 581081 30 100.0 36 .............................. TTATCTTTATTATCGGGTTTAGGAAGAAGGCGTATA 581015 30 100.0 38 .............................. TCGACATAGCCGTTCATAAATAGAAACTGAAACTTCGT 580947 30 100.0 35 .............................. AGTTCTACAGTCACCGTAGCGTTTGAAACGCCTCC 580882 30 100.0 35 .............................. TTTTTCCTCTAAACGTTCCTGTGCTAATTTGTCAT 580817 30 100.0 36 .............................. GAGAGCGGAATTAGGGAATCAGAAGGACTAAAGATC 580751 30 100.0 38 .............................. TCGTGCGTAGAAGAAACGAAAAACATAGATATGTTTTG 580683 30 100.0 35 .............................. AGGCTCTCGCCTCTACCTCCCTCTCTAAGGAGGTA 580618 30 100.0 37 .............................. TCAAATCAACCATTACATCCCTATCTCTTGTTATCTT 580551 30 100.0 36 .............................. AATATGAAGACGACTACAGCAAATATCGTCGTCACT 580485 30 100.0 36 .............................. AAGGAGGATGAAGAAGAGAACTAAAATCAGTGTAAT 580419 30 100.0 40 .............................. CTTTCTTGATCAACTTTCAGAGTTATCGATACGATTACGG 580349 30 100.0 37 .............................. CAATTTCAGGGGCAGGCGGTGTGATCGGTGCCATACT 580282 30 100.0 38 .............................. TCGAATAACCGTAAAAGTAAGCAGTTACAGACCCGAAA 580214 30 100.0 37 .............................. AATCCGATACACTCCTCTGTCATTTTAAGTCACATAG 580147 30 100.0 35 .............................. TTTAAGCTTTTCTATTATTTTTAGAAGAATGAAAA 580082 30 100.0 38 .............................. TGATTGACACTAGGGCTGTCATGATAGGGACAAAGAGA 580014 30 100.0 36 .............................. TTAGTAGGCGTGCGGTAGCTTCGTGTCCGACCGCGG 579948 30 100.0 36 .............................. ATAATAAAAAAAACTTACCTTGAGAGGTTCACTGCC 579882 30 100.0 38 .............................. TGCCCGGGAATTTGGATTTAAGGCAAATCTCCAAATGG 579814 30 100.0 37 .............................. CTCTAAGCCAGAGGTGAAATTATGAAGGCAAAAGAAG 579747 30 100.0 36 .............................. TTTACTTTCGTATATTTCTCCAGTTCTTCCAAGCTG 579681 30 100.0 37 .............................. TGAACATTAAGTGGGCTAGAGATGTTTGCTTGATTTT 579614 30 100.0 37 .............................. GTTCAAGTCAGCCAAGAAAATGGTATACTTCTTGATG 579547 30 100.0 38 .............................. TATTTATTATCGATATGTTGAGTCAATTGGTTATATAG 579479 30 100.0 38 .............................. GTCAAGAGTCACAGTCAGAAAGTCAGGTCATAGGTCCT 579411 30 100.0 37 .............................. CGATATGGGTCCATTCTCGCCCAATTTCCGGCGACCG 579344 30 100.0 38 .............................. ATCCAGTAGTAGTGGAGGGACCTAAAAGGTTCCCTCCA 579276 30 100.0 37 .............................. TACAGAATGGACTTCAACTAAAACCGTCTCAATGTAC 579209 30 100.0 37 .............................. CTATTTGTGCTGGAAGCGCTGCTAATTGATCGTAGTA 579142 30 100.0 38 .............................. TGAAAAATCACGTAAATGAAAACACATATGTGTTTTCA 579074 30 100.0 36 .............................. AGTCGACGGGGTTTGCCCCCGTCAATGATGAATCTG 579008 30 100.0 35 .............................. TGGGAATACAATAGAAAAACATCCACAGTGTCGAA 578943 30 100.0 35 .............................. AATAATGATTCAACGTTACTTGCAATACTTCCTAT 578878 30 100.0 35 .............................. GAAATATATGTATACTTTATGTCCCATAGTGTATT 578813 30 100.0 37 .............................. CCTTTGTAAAAAGAGATGATACGGAAGCTATTTCTGA 578746 30 100.0 37 .............................. CATTAGATGAAGAAGACCAGAAAAATGTAGCAAATGG 578679 30 100.0 37 .............................. TAAATTGTAAGAAATTTTTTTTTAAATCTACAAGAGA 578612 30 100.0 37 .............................. CATATCAGAAATAATGGAATGCCAAGGACAATGTGAT 578545 30 100.0 37 .............................. GAAGAACCTTCTTTCCTACCTGTGCATATCCCTTTGC 578478 30 100.0 37 .............................. CCTTTGCAAGTAGCTCTATCTTTTCGTTCTGAGCTTT 578411 30 100.0 38 .............................. GGAATTCATGTAAATCAGTCACAGATTGATGCGATAAT 578343 30 100.0 37 .............................. TACCGAAGGACTGGGAACCACATGAGATAGATGAAGA 578276 30 100.0 37 .............................. ATATAATGAATATTCCAGCACCGACAGCAACCCAGAA 578209 30 100.0 35 .............................. TCACGACATATCGTCTTCTCTGTCTTGGCACGCTT 578144 30 100.0 36 .............................. CAGCTTCGGCGCTTCGTGGAGGAGAAGTAGGAGCGG 578078 30 100.0 38 .............................. TTACCCCAACTACCCCCAATATTCCTAACCCTCGTCCT 578010 30 100.0 36 .............................. TTTTTCTAAGGCTATACAACGCAAAGTATTGTTTTC 577944 30 100.0 38 .............................. TGTTTTCGTCTTCAATGCTTACGACACATTTTCTACCA 577876 30 100.0 37 .............................. GCTTCGATCACATATCTGTCCCCCTCCTTGAGGGGGA 577809 30 100.0 36 .............................. TAGATGAAGAGCAAAAAATCACTGAGAGAGTAGCTA 577743 30 100.0 38 .............................. TAAAATGCCAAGTAATGAGGCAATATATTCACGATAGG 577675 30 100.0 38 .............................. CAGTAGAAAAATACTAGTAACGCCGAAATTTCATTTCG 577607 30 100.0 39 .............................. CCGTACTCTTGAGCCTGGACCTGTGATCATCCAACAGGT 577538 30 100.0 38 .............................. ATCAGAGAGAAAAATGGTACATGAAAAGGTATATAAGG 577470 30 100.0 37 .............................. GCAATTTTGCTGTTGCTTCGTGCCCTACGGCGGATGT 577403 30 100.0 36 .............................. TTTCCTATGGCATCACCGAATTCACTAACCAGTTCA 577337 30 100.0 35 .............................. ACATGGAACAAAGAAGATTTCGATACTTTAATATT 577272 30 100.0 39 .............................. ATGTCCCCAGTCTGATGTCAGTACCCTTCTCTATGAGAA 577203 30 100.0 38 .............................. ACACGAAGGCATATTTCCTAAACTTTTTCGCGGTTTTA 577135 30 100.0 36 .............................. GCGCATTAGTCGGCGCATTCAATATTAACACTACAA 577069 30 100.0 38 .............................. GAGAGTATGGGAAGACCGGTTCAGGCTTCATTAATACG 577001 30 100.0 36 .............................. ACCGATGTAGACTTTCAATTCCCTCTGACGATAGTA 576935 30 100.0 37 .............................. TAATAGCTCCTAATACTCATCGTGTTTTGGAGTGGGT 576868 30 100.0 37 .............................. TAAATTGTAAGAAATTTTTTTTTAAATCTACAAGAGA 576801 30 100.0 37 .............................. CATATCAGAAATAATGGAATGCCAAGGACAATGTGAT 576734 30 100.0 37 .............................. GAAGAACCTTCTTTCCTACCTGTGCATATCCCTTTGC 576667 30 100.0 36 .............................. TCTTCATTTGGAAATGCAATGAATACTTCAGGTGGT 576601 30 100.0 38 .............................. TTTTTCTAAAAATTGCAGTATTCTTTAATTATAGAATA 576533 30 100.0 36 .............................. GCCAATGATCAAATATTTGAAAATGATGATTACAAA 576467 30 100.0 38 .............................. GTACCCATTTTCCTCACCTCCGTTTCTTATTGAATAGA 576399 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 94 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : ATATAATAATGAATATTATATATAATGAATATTCAAGATCACGCAAGAAATTAAAGAAGTTGAATCAGGGTTCGATATAAGTATGAATCACCGTTGAGTTATGTCAAGGATTACAGACTATGGAAGAAAAGCGGATACATGGCGTTAATACTTCATCTTAAAACTGCAATTAAGTGTACGTATTTCGTCTTTTTTGATCTCCTTTATTAATCTAACAGCCCTTCTTCTTATATCCAATTTGTTGGTAATGTCGGTTGCAACTCTTGTCAATTCATGACTCTCCATAAGTCCGATTTAAAAAATCTTAAAAAAGTATTATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAGAGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAATGTTAAGCAGG # Right flank : TCAAATCTTCCTGTTGAGCTCTTCCCCCGTCATGGCTACCCTTTACGGACTTCTGGCTACCTTATTTGGCATAATTAACGTGCTTTTTGCAGTAGGTATCTTTGGCATGTTAATGGGAATTCCATCTTTCTTCGTAATCAAGAAATTCAAAGGAATGAAGGAAGAGGATGTACAAAAATTTATTGCCTGATTTGAAAGAAAATGGAAAACTTTTTTCATTATCTAGAAGTTTAAGTATAAAAATCATGATTTTTTAAAGTGGCTGAGGATGATGAGATAAAAGTCGCTTTTCGTGAAGAGTAGTATAAGTAGTCTTGTTATAAAATTTTGTTAACAATAAATAAGGGAATAATTCTTAGACCTAGGCTAAAATAGCTAGGTCAACACCCTCGGTAATGGGTGAACTCAAGACATTATGGAGAGTAAACCTCTGTGCTTCTGTTAATGGGTATCAAAGAACGGTTTCTTCCCCAGAACGTCCCTCATAAGTGAAGGGTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 7 607259-601672 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 607258 30 100.0 36 .............................. ACAAACGGTCTTCTTGATATTTTTACGAACCACACC 607192 30 100.0 42 .............................. AAACAACTATTTCTGAGAGCATGAGTTTCCTAAACTGGTTTG 607120 30 100.0 37 .............................. GCAGAAGGGCAGGTAATCATGTCGGAAGCGGAGTTGA 607053 30 100.0 38 .............................. TTGAAAGATAACAACTTCATACTTTCGCCAGATAAGAT 606985 30 100.0 38 .............................. TGTATGATGTATATACAGTACTAGGAGGCGTAGATGGC 606917 30 100.0 38 .............................. CTCCGTGGGACTCCCTCTAAGGACCCCTACAAACTTGG 606849 30 100.0 37 .............................. TTTCTACTAATTCCTTGTAAGAGACAGCAGGGGTTGC 606782 30 100.0 37 .............................. CCATTTTATGTTACTGTTATAAAAGGAAGAAAATCGA 606715 30 100.0 38 .............................. TCTTTTTTTAACAAATTAATGATCCCGATCACCCCCAC 606647 30 100.0 38 .............................. AATTTGGTCGACCTTGATTTTGTGTCTCCATTTTTTCA 606579 30 100.0 38 .............................. ATCCAATCTGTCATCGCTTTCACCCCCTAGTCGTTAGC 606511 30 100.0 37 .............................. ACTCGTGTAAGCTCCCTTAGATGCCTCCTCGTATAAT 606444 30 100.0 36 .............................. AAAGATCTCATACCCGAACACGCCGACACCCACAAT 606378 30 100.0 36 .............................. AATCCATTTCGATTTGACTTTCAGTTTGGGTGTTTT 606312 30 100.0 34 .............................. TTGGAGCATTTGTTATGTATATCATTTTTTTCCC 606248 30 100.0 40 .............................. AAGTCTTGGTGGTCATGGACTTCCCGGAGCCAGCCTCCCC 606178 30 100.0 37 .............................. TACGTATTCGTAAAGCGGTATCGGTCTTTCGGTAGCG 606111 30 100.0 35 .............................. TACGTCTCTTTGCTTCCTCTTCTGCGTTCATTTTT 606046 30 100.0 37 .............................. CTTTTATTGCCACTCGGTTCATGGGGACATTGACCCC 605979 30 100.0 37 .............................. TTCAAGCAATAGGCTCATGGTGGAAAGTAAAAGATGC 605912 30 100.0 36 .............................. TATTGTTGCTATCATTAAGTTACTGAAGTAACCCGC 605846 30 100.0 38 .............................. TCACTCGTCGATATACCGGGAATAGGGAGGAAGAGGGC 605778 30 100.0 36 .............................. CGTGGAAGGATGAAATTTTGGAAACTCTCCATGATC 605712 30 100.0 39 .............................. TATTACGGAATCACTGACGAAGCCGGCTAATGCACCGAG 605643 30 100.0 37 .............................. AATCAAGAACGCTCGAACGCCACAGGAGCACAAAGGG 605576 30 100.0 36 .............................. ACCCCTAGAACCGATGTTAGCAACTTTGCCGTTGCT 605510 30 100.0 39 .............................. TAGACAGAATTAATACGGAATCCCAGATCACGAGGATGG 605441 30 100.0 38 .............................. CAATACTCCTGAACTATTTCAAAAAAACAATTCTTCAG 605373 30 100.0 38 .............................. TTTCTACTTTCCATTCTTCGGTTCTCTTTATGACGAAC 605305 30 100.0 38 .............................. GAATGCGTTCAGATCCCAGAAGAGGTCGTGGAGATGAA 605237 30 100.0 35 .............................. GGAGATGGGTCAAAACGGTAATCGGGGCGGCGGGT 605172 30 100.0 35 .............................. TATGAGTTTTGAATTATTCTAATGTAACATGAGTG 605107 30 100.0 37 .............................. CATTCTCTCTCTGCAGCTTTGCTATTTTACGCTCAAG 605040 30 100.0 38 .............................. CCCTACAACTACCAGCTAATCTGCTACCATCTGGACTT 604972 30 100.0 36 .............................. CATATTTTTGATAAGAAATGAAATAGTGAAAGAAAT 604906 30 100.0 38 .............................. TTGGTATGGTCCTATCGTTCTGCCTGAATATTTTCATC 604838 30 100.0 37 .............................. TGGGACTAGCTATACAGTCCACGGAACCCCAAGTAGA 604771 30 100.0 37 .............................. TCTTAGGGGAGGCTGGCTCCGGGAAGTCCATGACCAC 604704 30 100.0 37 .............................. CGTTCTTCGTGGGGTAACGTGTCCCCACCTGACCTAA 604637 30 100.0 36 .............................. GGGGGACAAAGATCCCGTCCGTCGTGGTGTGGTTCG 604571 30 100.0 38 .............................. CATAGGGACGCACTTCAAGAACCTAATGGGTGGTTATA 604503 30 100.0 39 .............................. TTTTATCGGCATTCAGGTTTAGGGCTAATTTTACTTCGA 604434 30 100.0 37 .............................. TAATATACGTTCAGAGGAAGAATTTTCTTTCCTATCG 604367 30 100.0 36 .............................. CATTCGGCGGTGCAGCGTTTTTCATACTACTGCTCT 604301 30 100.0 36 .............................. CCCCCCGCAAGAGAGGAGCAAAACAGGTAGCATGGT 604235 30 100.0 37 .............................. CACCTCGGTATTCGTATTCGTACCCCTCCTTGAACAT 604168 30 100.0 36 .............................. GTAGGAAGGCAATTAGTATATCTCCATGAGTGGCGT 604102 30 100.0 37 .............................. ATATGCTTAAAAAGTAAGGACGTATCTCATGCTCATA 604035 30 100.0 37 .............................. AATGTCCCACAGCTGATTCGAATCTGTTTTGTTGTAG 603968 30 100.0 36 .............................. CTCGTGAGGATAATATGCTTCTTCGGGATCTGTCCC 603902 30 100.0 37 .............................. GGAGTATACGTACTCTGGACAGTACTTCTACCCTCTG 603835 30 100.0 37 .............................. GCCTTAGGCTAAAGCGTGGAACTTATGTCATTAAAAT 603768 30 100.0 37 .............................. TACTATGGAATAAAAGCCTGTTTTCAAGTCTTATGCA 603701 30 100.0 36 .............................. GAGGTAGGGGAGTTCGACAAGATTAAGGCTATCCTT 603635 30 100.0 35 .............................. GAATACCACCTAAAGGAGGGTCACATAGTATCATG 603570 30 100.0 35 .............................. TATTGACTGTCGATATGTTCTGTTAACTGATTCTT 603505 30 100.0 36 .............................. AAGGGGATGGTCAGGGCTAACGAGAAAATCCTTAGA 603439 30 100.0 35 .............................. TGTTGAGCTGATATACGCCCGTCGTCGAAGAACTT 603374 30 100.0 37 .............................. TGTTTAACCCATGTTGACCATAGCTTCCATACGTATC 603307 30 100.0 36 .............................. GCAACAAAACGTTCAGTATTAGATCAGCTGAAACGT 603241 30 100.0 37 .............................. CATCTTCGTTTTCGTGGTGGCCATTATAGGGGCTAAG 603174 30 100.0 37 .............................. TCGAATATTTTGAAATACGCTTCATCATTAGAAACGT 603107 30 100.0 38 .............................. TTGCATAGATCCGTACGGCTCAACACTCCCGCATTGGT 603039 30 100.0 37 .............................. GTAGTCCTGCGTTCTCTTTCACGTTTTTCCCTTCATG 602972 30 100.0 36 .............................. CAATAGTAATGTTTAATGGTACATCAACATAATTAT 602906 30 100.0 36 .............................. CCTACACTGTTAAGGCTAATGAGTTGAAAGAAAAAG 602840 30 100.0 37 .............................. CCGTGTCTTCTTTTATGCCTACAGCGCTGGCTATGTC 602773 30 100.0 35 .............................. ACTTAAAAACAAAAAATGGTCGAGAGGGCAGGGGG 602708 30 100.0 37 .............................. AAGACCGACCTGAAAACGGAAATGATGATGGTTTTTT 602641 30 100.0 35 .............................. GTATCTGTCCGTTAGGCAATATCACCCTTCCATTT 602576 30 100.0 38 .............................. TATACTCTTCTAAACAAGGTCAAGAAGGGGGAGATACA 602508 30 100.0 38 .............................. CTTCATCTTCAGTTTCACTCCACTCTATCATGTCCCAT 602440 30 100.0 37 .............................. CCGGCTGGGCATTCCTCTAAATCTTCGTCCTCATGCT 602373 30 100.0 36 .............................. TTTAATAGTGCATAGAAATCCCCGGGACAATACAAT 602307 30 100.0 38 .............................. CACTAAGCTGTAGAACATCCACCGCTCACTTGCCACGA 602239 30 100.0 39 .............................. AAGGAGTACTCTCTCATCACTGCTACCCTGATAGCCCCG 602170 30 100.0 36 .............................. TGACGATCTTCTTCTTCGGGATCTGTCCCGAAGCTT 602104 30 100.0 36 .............................. TAGAGTTCAATATTACAGGGCCCACGAATGTGTACG 602038 30 100.0 38 .............................. TTTGCTGCGGAGGCGTAGCCTGTGACGGTGCTGCTGAA 601970 30 100.0 36 .............................. TTCTCCGCTATGATTTCCCAAGCCTTCGCAAAGGAG 601904 30 100.0 38 .............................. TCATCTGCAATTCGTCAAAGTAGCGATTGGCAACATAG 601836 30 100.0 38 .............................. GCAAAAGAGAAGGCAAAAGAGAATCAAGCCCCCGCAAA 601768 30 100.0 37 .............................. AATGATTCGGATCAAGTCAATAGTCTATTCGTAGCGG 601701 30 93.3 0 ............................CT | ========== ====== ====== ====== ============================== ========================================== ================== 84 30 99.9 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : ATTTAATAATGAGAGGATAGAGATTAAATAATTAGCTATAGATCCGAAGTCTTCCTCAATGCTAAATAGATAAAATTTATTTTATAACACTACTAGATGAAAATATTTAAGCCACAGGAATTCCCGTAAACTGCCTTCCTAGTTCAGGGAAGCTGTTAAGTCATTTAGAAAGATGGGACATGACACTAAATAACCGAAATTGAACAACCTCATTCCCAAGGGCGTGATAGTTCAATAAACCTCTCTTTTAGAGGAAATTATAAATTAATAAAGTTAAAAGAGATGTTGTAATAATGTATTTATGCATCTTTATTGTTTATTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAGAGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAATATTAAGCAGG # Right flank : GGAAGAGGAAAGACAGTGAAAAGGAAGCGCTGTCCTGAGTGTATTCCTAGCAGGCAATATTTGCAGCTCTGAACCCGATACCGACACATACGCTGGACAAAGCCACGACTCTGAATCCAAGTCTTCGCCCGGGGAAGAGGAGGTGGTCTCTGTGGTCACTGCTATAAGGGTTACATATGCGGGCAGCTGATACTTAAAGGCCCATAGCTTGTAAATAGCCAGAAGTCAAAACCGCAACAAGGTTCCAACTTAATATAAAGACAGTTCCTCCAGCGAAAGGCAAGAGCCCTATCCACTTGTATGCATTCACTTTTAAGTAATCAAAGAGTCTGGTGAACCAATAAATCCAGCTCAGAGATAGCAACTTCACCCCAGTCAATACCATGAAGACGTTCAGGAAAGCCGTATTACCTAATATCAAGGGGTTGTAGTCACACTGCAATATCTCTAGGTGAGAAAAGAAGAGGGTCTCTGCGTAATCTATTAAATTGCCTACTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 8 2029261-2027125 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 2029260 25 100.0 40 ......................... ACGTTTATACACCTACTAAGATGTCCGAGATAGATAAAGT 2029195 25 100.0 39 ......................... CCTCAACGAAACGTGTAAAAGCTTCCCTTATGGTCTCGT 2029131 25 100.0 39 ......................... TATTCTTCATGAAAACATAACTGAAATGAACGTGAGTAC 2029067 25 100.0 40 ......................... TCAGCGGTGAGCGTGCATAGGAACGTCTCACCGTCCTCTA 2029002 25 100.0 40 ......................... ATATTCTAAGTTGCTCGTGTTCCCATAAAGCTCTTGTAAA 2028937 25 100.0 40 ......................... TTGATATCGGAAAGTATTTTTATTCTCACGTTTTATTTAT 2028872 25 100.0 40 ......................... TTTAGGAAAGAAGGTTCTTCCGGTGAAGGTGTACTATCGT 2028807 25 100.0 39 ......................... TATTGTAGCAGGTTTAATGAAGAAGGCAAAGTACGATAG 2028743 25 100.0 36 ......................... ATTCCTTGATATTTTCTGTACTTGCGGTGAATTCGC 2028682 25 100.0 39 ......................... CTGAACGCATTGAATCTATGTCGCGTCCAAGACACATAT 2028618 25 100.0 36 ......................... TGTATTCACCCTTGGATAATGAAAAAATATCCAAGG 2028557 25 100.0 37 ......................... TCATCTGCGTGACTGTTAAGCCATGCCATATAGAACT 2028495 25 100.0 39 ......................... TGACAAACTGACTTCCTCCCAGCCCTAAAGGGCGAGGCT 2028431 25 100.0 39 ......................... CTAGGCATTCCAGATACATGCATACTATACTGCTGGAAA 2028367 25 100.0 40 ......................... AATCCACCTCTTCCACTATATAGTGCCCTTTCGCCACAGA 2028302 25 100.0 38 ......................... ATTTTTCACGATTACGATGTTCTTAGTATTTTTCAAAG 2028239 25 100.0 37 ......................... GATTTTACCTGATGTTTCCTTCAAGACTGAAAAGAAA 2028177 25 100.0 39 ......................... ATTGCTAAAATGCCGTCGTCGATTTCCGCGATACCGACT 2028113 25 100.0 40 ......................... TATGATTTCAGGCGTGACACTAGGAAATTGCCATTGACAC 2028048 25 100.0 35 ......................... TCGTCCTCGTCGCACCGACGGGGATAGGAAAAACT 2027988 25 100.0 40 ......................... AACGTGAGTAGAGACTCGGCAATAATACCGAAGTCCCTAC 2027923 25 100.0 41 ......................... CACCACTGCCCCCCGCAAGAGATCAGCAAAACTGGGAGCAT 2027857 25 100.0 40 ......................... TTAAAGTAAGAAGCACCATAAGGTAAGCTACATACGTTAT 2027792 25 100.0 39 ......................... GAACCAACCAGACCTGACACTTTACGGCTTTCAGGGTTA 2027728 25 100.0 39 ......................... ATTGCTAAAATGCCGTCGTCGATTTCCGCGATACCGACT 2027664 25 100.0 40 ......................... TATGATTTCAGGCGTGACACTAGGAAATTGCCATTGACAC 2027599 25 100.0 35 ......................... TCGTCCTCGTCGCACCGACGGGGATAGGAAAAACT 2027539 25 100.0 40 ......................... AACGTGAGTAGAGACTCGGCAATAATACCGAAGTCCCTAC 2027474 25 100.0 41 ......................... CACCACTGCCCCCCGCAAGAGATCAGCAAAACTGGGAGCAT 2027408 25 100.0 40 ......................... TTAAAGTAAGAAGCACCATAAGGTAAGCTACATACGTTAT 2027343 25 100.0 39 ......................... GAACCAACCAGACCTGACACTTTACGGCTTTCAGGGTTA 2027279 25 100.0 41 ......................... ATAGCCATAGGCGACAATGACCCCATGGCTAATACACCGTC 2027213 25 100.0 39 ......................... TCCACTTCTCTATTCTCTTTATCACGAATCCGACGGCGT 2027149 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= ========================================= ================== 34 25 99.9 39 GTTGAACCCATAACGGGATTGAAAG # Left flank : AGCGAAAATTTCAACTATTTTTCAATCTATTAAAATTGTAAATCTTACAGTATTAAATGTAAAATCATTAATATTAGATTTTGTATTAGATATTTAGTTTTTAGTAAATTTTTTAATTATTTATCTAATTTTATATTTCTTATATATGTAGATTATTCTTTTTCTAATTTTACATATACAAAACTTTTAAGGATCTATGATTTTGTAAAGGTCTTATTAGTATGTACCTATTTTTTAATTAAGTTATATCTAATAGTTCGATCTTTCCATGGAGATAATAAACGATGAAGTTCGAGTTTCTTTGCGACCGAAACGAAATCCTTAGATTAGTTTTACATTTATAAATAGGGTAGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAAAAGGGTCGAATTGTGAGTTAATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAGATGAAGATAGAGATAAATAAAACCTTCA # Right flank : TTAGTACCAATTTCTAGTTAATTTTTACCTAATTAAGTTTAATTTAAAATTATAATAAAAATCATAAAAGATTATCATGTTTGAAGGTCTCAATGAAATGGTATTACCAATTTATAATCCCCTTCATCAAGACATAATTATGGGAGGAGGCACTATAGCCTTCGTAAAAGATTGGGGAGCTTTCTTACACGTTAAAGACAACATGATAGTTTGCTCCTTAAAAGGGAAGGATATGTGGAGCGTCTCTCCAGTTGAGCTATCTTCCATCGTTTTTCTCGTCACTGGTTCGGTTTCTTCTGAGGTAATTGCACTAGCTAACGAGTACGGGATAGACCTAGTCTTCTTCAGGAAAGGAGAGCCCGTAGCTAAGGTGATACCCGCAAGATACGGCGGTTCCATGAAGGTTTGGCTATCTCAACTTAAGGCGTGGAAGAGTTCTCGGGTAAAGTATGCCTCCGTCTTCGTCAGAGGGAAGTTGAGGAACCAAAGGGTGGTGCTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 9 2037679-2039034 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 2037679 25 100.0 37 ......................... TTCGTCTTCTTGAAGGGAAAAGAATATATCCTGTTAT 2037741 25 100.0 38 ......................... GCCTCTGTTTGTCAATTGACGGAAGAGGCGTACTCCAG 2037804 25 100.0 37 ......................... TCGACCTCAGTTCTTCAGCGGTGAGCGTGGTTAAAAA 2037866 25 100.0 40 ......................... CACTCTCATCATTGACGGGGGCGAACCCCGTCTTTTTCAG 2037931 25 100.0 36 ......................... CTTCAAGGCAAAGTTAACTAACGGACATGAAGTCGA 2037992 25 100.0 38 ......................... TCACACCATATCTCCCTTTACTTTCATATACATCACTG 2038055 25 100.0 40 ......................... TTATAAGAAGTACGGCTGACGCAGGCACCTTAACGATCTT 2038120 25 100.0 36 ......................... CTATCCCCATAGACGCATTAGGTATACTATAATTAA 2038181 25 100.0 39 ......................... CTAGATACGGTATAACTATTTGTTGTGTACACATGTTGG 2038245 25 100.0 39 ......................... ACAGAAAAATGGGGTAAAGAACATCATCCTAATGTAGCC 2038309 25 100.0 40 ......................... ATTTATAGCTCGACTTTACAAATGAATTAGAACTTAATTT 2038374 25 100.0 39 ......................... ATAGTAACGTTATTACCTTTTATCCAAGGGTATTTCCAC 2038438 25 100.0 35 ......................... ATGTTTACGCCATTTCTTTTGAGGTTCTGGAATAT 2038498 25 100.0 40 ......................... TTGCAATAATCCTGGACGGTAACTCCGATAGATCATCCTC 2038563 25 100.0 36 ......................... TACAATTATGTATCCTTTTTCTTTTATAACATTCTT 2038624 25 100.0 36 ......................... GTAGGCAACTCTGGTTTAATCTCTATACCAAAGCAT 2038685 25 100.0 38 ......................... TTAATATTCGAATCCTTAACTGCTAATGCCTTTCTTAA 2038748 25 100.0 40 ......................... TACCTAGTAAGAGTTACACCCTCCTGTTTCTGATATTTCC 2038813 25 100.0 40 ......................... AAGGAAGAAGAGGAAGGTGTCCAAAACACATACGTACGTC 2038878 25 100.0 42 ......................... ATCTCAACGTACTTTGCTGAAGGTAGCCCCTTAAGACTACCT 2038945 25 100.0 40 ......................... AGTCGGTAGGAGGGATGCCGACCCCTCCACCCCATATTGT 2039010 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= ========================================== ================== 22 25 99.8 38 GTTGAACCCATAACGGGATTGAAAG # Left flank : ACAGAGTGTAACTTTTATTTAAAAAAATATATATGTAAATAAATATAAAAATATTAAGTTTTATTATTCCTTTACTAAAATGAGATACAGATATCTTAATGTAATTCAGTAGCCTTTACGATTCTCTTAATCCATCTATTCTTATAAAGTATTTTAAAGCAAGATTTGTATTTTATTTTAAGTACAAGTTATAAAATGAGAAGAGAAAACTATTTTATTATGATTTAAATCTTTATATGATTAAAAGATTGGTAAGTTCGATCTTTCCATGGAGATAATAAACGATGAAGTTCGAGTTTCTTTGCGACCGAAACGAAATCCTTAGATTAGTTTTACATTTATAAATAGGGTAGTTTCTTTCAGTTAGTGTAAAACACCATGCGACCGGGTTACGGTAAGGAAAGGAAGGGGAGAAGGGTCGAATTGTGAGTTAATGGAGGAGACGTAAAATTTATAGGGGAGAAAGGAGAAGATGAAGATAGAGATAAATAAAACCTTCA # Right flank : ATGTAGCCGTTCCCGATAGTGAGTTTAACTAAATCAAGGGTTTATTTACTTCATATAAGGATCACATTCGCTTCTCATTGTAGCATCTTTCTAGTATAGAATTGCTTATTTTACATAAAATATATAATAAATTACCTATATCTAAATAAAAAATAAATATATAAATAATAATCTAAATTTATACTACGCTTATCCTCCTATATACAGATGATACGCGTCTTTCACTCCACATTTCCTCTAGTCCCACATTAAGGTTCTGAGAAAGGAACTTTGCGAAGCTCTCTTCATCAACCCAGGAAGGAACTTGAACCTTATATATCTTGTCTATGTCTCTCCCCCAATAATAGTAAATTGTTATTAATAATGAAATTAGATCGTAATAGTTGAGGTGTATTTCCTTAGGTAAACCGGGAAATTGAAGTGAAACCCCCGGGATCGGATAACCTGAAACCCCATAATTCTTCCCTCCCCCTGACCTTGTCGGACTCGTACTCCCTTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 10 2153086-2157449 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018930.1 Sulfuracidifex tepidarius strain IC-007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2153086 30 100.0 37 .............................. ATGAAGATACTTCCGAAGTGATAACGGGTAGCAACAC 2153153 30 100.0 35 .............................. TAAACAGCCCCGTTTTAGTAGAGTCGCTAGCTCGT 2153218 30 100.0 37 .............................. TCACATATTCGTAGCTGTCATGTAGTAAAAAAATATC 2153285 30 100.0 35 .............................. AGGCTTCTCAATTACAACAAAAAGTAGAGCCGAAT 2153350 30 100.0 38 .............................. AAGAAAGCGGTATGTCGACATATACGGTAGGGACAGAG 2153418 30 100.0 36 .............................. TATTTTATATCGCTGTTATACTTCCTCATAACGTTA 2153484 30 100.0 37 .............................. GAGAAGAAGACGGAATAACAGTAACGGGACTCATAAA 2153551 30 100.0 36 .............................. TGCATGTAGCTACTATAATGTATTTTCCAGGGGAAT 2153617 30 100.0 36 .............................. ACGCGTTGGGCAAGAACTGGTCTAATCCGTACCTAA 2153683 30 100.0 36 .............................. ATTTCAAATCACTCAAGCCAGAATTGTTTGAGCTTG 2153749 30 100.0 36 .............................. TTTTTCATAATAACGTAATCTTGTCCCTACTTCTGC 2153815 30 100.0 37 .............................. GAGAAGACGGCAGACTGTTGGGTAAAGTATAGGCATA 2153882 30 100.0 38 .............................. CAGAGGACGACGTAAAGGTCAGGGACAGGGTGAGGAAG 2153950 30 100.0 37 .............................. ACCTCAGGGTAGGTGAGGAAATAGCCCGCTTTAGGAG 2154017 30 100.0 37 .............................. GGACAAAACGCCTCCGAAGTTACTCCTCAAGAGTATG 2154084 30 100.0 36 .............................. ATATTCTGTTAAAATCGTTCATTAACGCGTTTATCG 2154150 30 100.0 36 .............................. AAACACCGTTGCCGGTGCTCAGTGGTAATTCGTTTC 2154216 30 100.0 36 .............................. CAATGTAGCAGAAAAATATCTACGAAAGAGAATGAA 2154282 30 100.0 37 .............................. AAATGAAATGAAAATGAAATGAAATATATGGACTGGG 2154349 30 100.0 37 .............................. TGATCAACACATCTAGAACTAACTGTATAATGCTCAT 2154416 30 100.0 39 .............................. TATATCCTTTCCCGTTGATAACGTTCTTTTCATATGGAC 2154485 30 100.0 36 .............................. TTGAATTTGAGTAGCGGGTTGAACTGTGATATATTG 2154551 30 100.0 38 .............................. TATGAGTAACAGTCTTTCTCTTCATAGAGCTCTTGAGC 2154619 30 100.0 37 .............................. TCCTCATCTTCATGGGAATCGGTTGGAAGTTCATGGG 2154686 30 100.0 39 .............................. ACTTGGTGTCTCTTGCTCTTGTCCTAATTCATACTGAAT 2154755 30 100.0 37 .............................. ACATATAGCGTAAAGTTGTCATACCCGTTGTACTTGA 2154822 30 100.0 36 .............................. AATTTGTGATTTTTACTGTTTGAGAGCCTGAAAGGG 2154888 30 100.0 36 .............................. CAAAACTCCTAACTCCTTTAGCCTTCTAACCTTTTA 2154954 30 100.0 37 .............................. TAATCTATGGCGAAACAAAAAGCGAATTGAAAGATAA 2155021 30 100.0 35 .............................. GGGGACTTGGTTCAGGAGAATCAACCCATGGCAGA 2155086 30 100.0 39 .............................. TTTTGAAAGTATTGGTAGTTTTTGGTTTTGTAAAATGGT 2155155 30 100.0 38 .............................. TAAATCCTACTGAAGAACAAAAAACATTACTAAAGCAG 2155223 30 100.0 38 .............................. GAAGATTTGGCAAGACAAAAGAGACTGACATTAAGCGA 2155291 30 100.0 36 .............................. CAGCGAGGAGGTGAAAAAATGGCTAAATCGAAAAGA 2155357 30 100.0 37 .............................. GATTAATGGTACCTACAATAGTAGAGTACAAACAACC 2155424 30 100.0 37 .............................. TCTTTAAGTCCGTCACATAGAAAATCTAGTTCTTCCC 2155491 30 100.0 37 .............................. CTGCCAATGGGCAATGGCAACAAGTAGTAGTAACTGT 2155558 30 100.0 36 .............................. TAAAAAAAGATGAGTATTACTTCATTCTCACTATGT 2155624 30 100.0 37 .............................. TCGCTAATTTCCATGCCATAGCGTCAGACGGGGCATG 2155691 30 100.0 37 .............................. TGAGCCATATTGGTAAAATGTGTTCCTCACAAATCTT 2155758 30 100.0 37 .............................. TCCTCACTCATTTCCAAATATTTTTGTAAAACATATG 2155825 30 100.0 37 .............................. CAAAACCCCGGAGTGCTATAGGCTGTTTCCCTGAGTG 2155892 30 100.0 36 .............................. TAGTAATAGTAGTGGTTGCGAGAAGATAGAGATAGC 2155958 30 100.0 36 .............................. CAAAACTTCGATTGCCTTCGACTAAAGTCCAGTTTT 2156024 30 100.0 37 .............................. TTTTAGCAATCAGATCTCTGTGATACGTTTCTGGGAG 2156091 30 100.0 38 .............................. ATAGTGGCGTTTTTCTTTAGCAAGCTGGAGTGATTTGT 2156159 30 100.0 37 .............................. GTAACAGCAAACTCATTAGGAGCCTGAGCTTGCCCTA 2156226 30 100.0 36 .............................. AAAATACAGTGCCACAATTTTTTCTCAGTAAACTGG 2156292 30 100.0 37 .............................. TAGCACAAAAGAAAGGAAATTGTACTTTTTAGATGAA 2156359 30 100.0 36 .............................. GAATTAGCACTTTTCCACATGAACTGAACACCAAGA 2156425 30 100.0 36 .............................. GGTCATTTATCTTGAATCCTACTACGACGATATTTT 2156491 30 100.0 37 .............................. TCGCGTCGAAAATGGCTGAACTAGGCGTACCGTTAGA 2156558 30 100.0 36 .............................. ACATCTAGAACACCGTAACATTATTATGCGTTACGG 2156624 30 100.0 36 .............................. TAATAAATAATAAGAAAATAAGAGAGGATTTTCTAA 2156690 30 100.0 37 .............................. GAGATAGATTTCTATATATTTTAGAATAATTCGGCTG 2156757 30 100.0 37 .............................. CCATTTAATTCCGAATAAAGAGCTGTCCACGCCATAG 2156824 30 100.0 36 .............................. GATTTGGGTTTGGGTCTGAGTTGCCATCTTTTCGCA 2156890 30 100.0 37 .............................. AAAGTACGCCTTCCCTAGTTTTTGTTTATCCATATTG 2156957 30 100.0 36 .............................. GAAGGGGGACATTGGGATAACCTCATGGCTAAAGTA 2157023 30 100.0 35 .............................. CACTAATAGGTGCCGGTATAGGTGCCGGTTCAGCT 2157088 30 100.0 35 .............................. GTGGAAAACCACCAACATACTATCAAGGTCTGCTA 2157153 30 100.0 37 .............................. ATCTTTCAATAGGTACCACTTCCTCAATATAAGTTAG 2157220 30 100.0 37 .............................. TGCGTACAATGTAGCTACACAATACGATGCTACTGGT 2157287 30 100.0 37 .............................. AATATACTCAGGTCGATTCTGTTCGGTTTGGTATACG 2157354 30 100.0 36 .............................. GGAAAGACAGATACTCGATTCACTGGCACATGCACC 2157420 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 66 30 100.0 37 GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Left flank : CTGAAGACAGTTTCAGACTTTTCACGAGCTCGGGGTTAAGAACTGAGGAGAGAGAACGACGAGATTACTAGTTGAGGACAGAGACGGAAATGCAGGTAGGCCGGACTGAGGTATTTTCGCTGCTTATATATCTCATCCCTTTAAGTATGTATGTGTTCTCACGACATAGAGAACCTCGATCTGAACAACGAACTTGATTTTGGATTTACGTATAGAAGTGGAGTTGAACTCTTTACATATCAGCCTTGCTTCTCCATTATTTTATATATTGGATTTATAAAAGGATAATATATCACCAATTTTTTCTGTGTTTAAAAATTTTCAGATAGTAGAAGGAAGTCAAAAATTCGGCAGTGAAAGGGAGAGAGAAATATGTTTTTCAAAACATATTATTTTTCACGTAAAACTCCCTCGGCAGTGAAAGGGAAGTTGATGGTGCGACTTCACTGCCGAATTCAGAGTAACGTTTTTTAGGGAGTTTTTACATAGAATTAAGCAGG # Right flank : CTGGAGTGATTTTGCTATCGTTATGTTCTCAATTTCTCCTGGTTGCTACGAAGGAGCTCAGTATAATGACGGCAAACCCCGCTAACTGAAGCAGTGTCAAGGTCTCCTTTAATATCAACCAAGATAGCACAACCGTAAACACGGGCTCCATCGAAGTCACTATCGAGGCTATTATCGAGTCTGTCCTCCTCATCCCCCTGTAAAAGAAGATGTAAGCTATGACTGTTGCGACAACTCCAAGGTAGATCCCAGTAAGGGTAGAGGAGACCGACACGTCTGGAGACAACAGGAAGGAGATCACCATGGTCATGGGGAGTCCCCATACAGACTGCGAGGAGATGATCTCCATGTCTGACATCCCCTTCATCTGCATGAACCTGGAGAACACTATGAGGAGGGCGTAGGTTAAGCCTGACGCTACCCCTAAGGCAAGGTCGAGCGTAGTTACGTCCGAGAGGTATATCAGGTATACTCCGAGGAAAACCATCATGGACGCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGTGATCCTTAGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //