Array 1 5417-6603 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQK01000006.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1818 NODE_6_length_241150_cov_54.053_ID_3990, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5417 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 5478 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 5539 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 5600 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 5661 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 5722 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 5783 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 5844 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 5905 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 5966 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 6027 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 6088 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 6149 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 6210 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 6271 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 6332 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 6393 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 6454 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 6515 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 6576 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22774-24453 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQK01000006.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1818 NODE_6_length_241150_cov_54.053_ID_3990, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22774 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 22835 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 22896 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 22957 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 23018 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 23079 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 23140 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 23201 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 23262 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 23323 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 23384 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 23445 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 23507 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 23569 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 23630 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 23691 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 23752 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 23813 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 23874 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 23935 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 23996 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 24058 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24119 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24180 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 24241 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 24302 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 24363 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24424 29 93.1 0 A..............A............. | A [24450] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //