Array 1 26363-24748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHEM010000007.1 Escherichia coli strain Survcare310 NODE_7_length_43098_cov_4.0926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26362 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 26301 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 26240 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 26179 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 26118 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 26057 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 25996 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 25935 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 25874 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 25813 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 25752 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 25691 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 25630 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 25569 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 25508 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 25447 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 25386 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 25325 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 25264 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 25203 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 25142 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 25081 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 25020 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 24959 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 24898 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 24837 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 24776 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 130-646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHEM010000201.1 Escherichia coli strain Survcare310 NODE_201_length_7960_cov_4.10839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 191 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 252 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 313 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 374 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 435 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 496 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 557 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 618 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GCTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //