Array 1 181652-179415 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHUM01000002.1 Bifidobacterium longum strain UMA026 NODE_2_length_288555_cov_78.6166_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 181651 33 100.0 34 ................................. ACGAGACCGCCACTGTCACGACGGCCGCTGCTGT 181584 33 100.0 34 ................................. GCTCACGGGAAACAGAAACAGAATCAGAGTCAGG 181517 33 100.0 34 ................................. AGGACATCTTGTGGCAGTACGCGCGACGCCTCGC 181450 33 97.0 34 ................................T TGGCTGCGGCTTGTGCCTGATTGGCCTGTGACGG 181383 33 97.0 34 ................................C CCGGGGTAGGTGTGGACGTCGATGATCGTGCATC 181316 33 97.0 35 ................................T TATCGTCAATACTGCTCCAATCCTTTTCGCTGCTC 181248 33 97.0 37 ................................T TCGGCCAAGACGGACGCGTCGAATGCGAAGGCCACCG 181178 33 100.0 33 ................................. ACAACGCGCAGATTCTCAATATGATTCGCAATG 181112 33 100.0 36 ................................. CCGGATTGGTCTGCTGGGTCATCTCATTGATAACAG 181043 33 97.0 31 ................................T GCTCGCCCGAAGTCAAGTCGGCGCTTGACGT 180979 33 100.0 34 ................................. TTGGCCACACCGATATGACCGCGCGTCACATAAC 180912 33 97.0 33 ................................T GGCAGATGCAGGAAGCGTATGTTCGCGGCACGT 180846 33 97.0 32 ................................C ACCAGTCGGGCCAGAACATTGAAACGTACTGT 180781 33 100.0 32 ................................. ACGCGCCTGCCGGGCTTTGGTGATAGGCGCTC 180716 33 97.0 34 ................................T GGGGCGACTACGATGACATGCGGTTGACCGCGCA 180649 33 97.0 33 ................................C CACGAACACGAGCGGCAATACGACCGCCAATGC 180583 33 97.0 34 ................................T TCGTGAGAGGCCCGGAAGACGGGCCGTTGGTCAT 180516 33 100.0 33 ................................. CGCCCGCCTGACGGCAGGCATCGCGAAACGCCT 180450 33 100.0 33 ................................. TGCGAGTCTCATGAGGATTCATGCGAGTCTCAT 180384 33 100.0 34 ................................. GGTCGGGCGAGCTGCCTGAAACCCCAGAATATCC 180317 33 100.0 35 ................................. ACCTTGGTAGCGCAACTGGAAATCGGTTTTCACAA 180249 33 97.0 34 ................................T CGTCTCCCTTCACGCTTTCGAGCACATCCTGCGG 180182 33 97.0 33 ................................C AGACAGACAAGCTCGGGTTGATCAGCCGGTAGG 180116 33 97.0 33 ................................T GCGCAAAACCGGCATGGACCGTCTTACCATCGG 180050 33 100.0 34 ................................. AGCTCACGCCGGACGAGGCTGAGCAGCTCACCAA 179983 33 100.0 35 ................................. AACAAGCTCCGCGGCCTGAAGAACTTCACCTTGCG 179915 33 97.0 35 ................................C CCGCCCCGACGAAAACATCAAGCAGTTGCCTTAAC 179847 33 100.0 35 ................................. AATCAGCAATTACGCCGTCGAGTGGCGCAAGCACG 179779 33 97.0 33 ................................C AACGCAATGTGGCAACGCGAATACGCTGCACAG 179713 33 97.0 33 ................................C GGGATGGCTTTTCTATTTGCCCCTTGACTCGGG 179647 33 100.0 34 ................................. GAGCGTCAGCGCCGAATATCCTAATGCGCGGATT 179580 33 100.0 34 ................................. TTGCCTCTCCTGTCCTGTCATCTATTATCATCTC 179513 33 100.0 33 ................................. TCGGGTCGAAAAGATAACGCATAGTGTTCGCCA 179447 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ===================================== ================== 34 33 98.5 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : TGGCCTCCTCCTTCGAGGTGAAGGAAGGCGCCGAGCTGGGTGTGGAGGTTGTTAAGGCGTGAAGCTGATGGGCGGCTGAGCTAAGGTTCTGATTCCGCCTGCTCGCTGAGGGTGGTCTTGCTGCTGATTGAGCAGCGGGGCCACTCTTTTTTGTATGGCTGCATGTGTTGATGAACGACATTGAATAGGGGATCTGCATTTTCATATGCGTTTACGATTCTTGCGGAGTCTGTGTGAGCACTCCTATTTTGGAAAAACCTCACTGATGCAGTTTTTTCAAAATAGGAGAGTCAATGAAATGGAAATCTAGTCGACATGCCAGAGTTTCATGTTCGTTAATAGAAGTGGCCTTAACGCCAAGCAGTGAGACCATTCTTTGTACATCGCGGTATGCTTACGTTGTGCAACGATGATTCTTCAATGCAGTGCAATTGGCAAGGGGCCGATAATGAATTCTTATTTGCTTTTATCTAAAAAATCGGGTAATAGTCGCCGCTCAG # Right flank : GATGGTCTACGTGCAGGCTTCGGCCATCGATCAGGTCGCACCCCACTGATATGAACTGATTTTTGTTCCGTATTTCCCCTAACTCGATGGGAGATGATGGAACCATGGCAAAAGGAACGAGATACACGCCGGAGTTCAAGGCGAAGGCCGTCAGGCTGTTGACCGAGTCGCGCGGCTCGTATTCGTCGGAGACCAAGGCGATCGAACAGGTCGCCAAGGATCCGGGGGTCGCGCCGGAGACGCTGCGCCGTTGGCGCAACAAGACGGACGCCACGGTCGCGGCGGAGACCAAGCGGTCGGCCGAAGACGCGATGGCGGAGTTGAAGAGTTTGCGGGCCGAGGTCGCGCGATTGAGGCGGGCGAACGAGATATTGACGACGGCGTCGGCTTTTTTTTCGCGGCACGGCTCGACCCGACACGGCGTTGATGGTCGCTTACATCGACGAATTCAAGGACCGTTTCAGGGTCGGGCCGATCTGCAGGGTGCTGGCCGCTTCGCT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //