Array 1 16279-15458 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLR01000010.1 Salmonella enterica strain BCW_5047 NODE_10_length_162324_cov_4.35526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16278 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 16217 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 16156 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 16095 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 16034 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 15973 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 15912 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 15851 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 15790 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 15729 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 15668 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 15607 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 15546 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 15485 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1080-2940 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLR01000008.1 Salmonella enterica strain BCW_5047 NODE_8_length_204902_cov_4.21978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1080 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1141 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1203 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1264 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1325 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1386 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1447 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1508 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1569 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1630 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1691 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1752 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1813 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1874 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1935 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1996 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 2057 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 2118 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 2179 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 2240 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 2301 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 2362 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 2423 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 2484 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 2545 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 2606 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 2667 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 2728 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2789 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2850 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2911 29 93.1 0 A...........T................ | A [2937] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //