Array 1 1734-3043 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAY01000171.1 Escherichia coli strain A84 NODE_16_length_124708_cov_70.1866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1734 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 1795 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 1856 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 1917 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1978 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 2039 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 2100 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 2161 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 2222 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 2283 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 2344 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 2405 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 2466 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 2527 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 2588 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 2649 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 2710 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 2771 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 2832 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 2893 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 2954 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 3015 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28744-29870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAY01000171.1 Escherichia coli strain A84 NODE_16_length_124708_cov_70.1866, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28744 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 28805 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 28866 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 28927 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 28988 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 29049 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 29110 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 29171 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 29232 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 29293 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 29354 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 29415 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 29476 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 29537 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 29598 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 29659 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 29720 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 29781 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 29842 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //