Array 1 10178-8035 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYIY01000018.1 Mammaliicoccus sciuri strain SNUC 2430 contig018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10177 36 100.0 30 .................................... ATCTTCTGGACTATTTGTTTTGCCGATTAT 10111 36 100.0 29 .................................... TATTTTGAAGTTCAAGTAAGCGAACGCTA 10046 36 100.0 30 .................................... GTAGTTGCGCGCTATATTCCAAAGGAAAAT 9980 36 100.0 29 .................................... TGTAATTGGTCGAACTAAAGCTGACACAT 9915 36 100.0 30 .................................... TACAAGCAGCACAAACGATTACAGAAGATT 9849 36 100.0 30 .................................... ATAAAAATATCCCGTTCATATATCAAGGTA 9783 36 100.0 29 .................................... CAATTGCTACATTCATTGAAAACTTTAAT 9718 36 100.0 30 .................................... TCGGTTACGCAAACGCATTTATGTGGGCAG 9652 36 100.0 30 .................................... AAATCTTATGACTTGTGAGAATGCCTTATA 9586 36 100.0 30 .................................... GAGTCACTATTACTCTGTTCATATACTTTT 9520 36 100.0 30 .................................... AAAGTTAATCAAATAAAAAAAGACCGTTAA 9454 36 100.0 31 .................................... GGAGAAATGGAACGTATTCAAGCGGAACAGT 9387 36 100.0 30 .................................... AATGATGAATACACTGAAGTACCACCACCA 9321 36 100.0 30 .................................... AACAACTTATAAAGAGATAGCAGGGTGGCT 9255 36 100.0 30 .................................... AAAAATTAGCAGAAAAATACAATGTGTTTA 9189 36 100.0 30 .................................... TTCAAAGTGCAATTGAAGCATTAGAAGCAT 9123 36 100.0 29 .................................... TTATCGCATATTGTAATATATGCACTGAT 9058 36 100.0 30 .................................... AGCATTTCTCACACCATAATCAAAATCATT 8992 36 100.0 30 .................................... TGAGCAAGTAAAATAAACGAACGGTTCACA 8926 36 100.0 29 .................................... CTATATTTTGATGTTTCTTTGATTGCTGC 8861 36 97.2 29 ..........C......................... ACATGTTGACGGTTTGATAACATCAGACA 8796 36 100.0 30 .................................... AGGAATAAATGTGAAAACTGCATTGTATTT 8730 36 100.0 30 .................................... ACGTTCTTTTAATGTGTCCATGAAACCACC 8664 36 100.0 29 .................................... ATCTATTGTTTGTACCTCACATCAAAAAT 8599 36 100.0 30 .................................... ACAAGCTCCTCAGCGTTTAATGTGTTAGGT 8533 36 100.0 30 .................................... GTATCGATCGTTTTGTACCAACGAATACAT 8467 36 100.0 31 .................................... GCTTAGCGATGTCTAGAAGTTTTCCTTTTAA 8400 36 100.0 30 .................................... TTCTCGCTATAGGGCTATTTATTTGGTTGT 8334 36 100.0 30 .................................... ACTGATTGAGCAAGCTATTGAAGAACGTAA 8268 36 100.0 30 .................................... AGGATATGTCTGAAACTTTATCAAGAGCAA 8202 36 100.0 30 .................................... CTGGTGAATATAAAGGTCCTTTAGAAGACC 8136 36 94.4 30 .................................G.C CAATTAACAGTGTGAAGAAAGACCATGACA 8070 36 91.7 0 ................G.......C..........C | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.5 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : ATTATCAAGCAAAAGAAAAAGCATTTGTAATCTATTTATATCCAGAAGCGGGCCTTAGCATTAAAGAACAAATAAGGTTTAGAAATATACTAAACAACTTACCTGTTCCAGTTATTGTTTTAACCGAATCACCATATTTTTTATCTGATAACCTTAAAGGACTCAATTATTTTATTAATAATGTTCAAAAGATTACAGAATCATTTTTTGAAGATAGCTATTGGAATGCACCGATTAATCTCGAAAAAGAACGAATTAAAGAAAGATTTGAATATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAAACCGATTATTTCCAACTATTTGCTTGCGAATATCATTGCTTTTAATGATATCGATCTTTATATTATTGTTTCATTTTTAAAGCATTGTAATTTAGAGTACACATTAGAAATTGATAAAACAAAAATTTCATTAGCATTATCGACTTATCTATTTTCTTAATAATAATTTGAGTTTATAATTGTGCTAGAG # Right flank : GAAGACGAAAGAACCACAAAGGTCAGGCAGTTTTAGTATGGACCGTCTACACTTAATTGGACAACTTCTTTAAAGAGAAGTATTGTTGTTATTAAGAAGGTAGGGGGTCTTATTATGAGAAGCAAGCATACGGTTATGAATTTAAACAGCAATTTAATACAACGAAAAACCGGCCGATCCTGTAGCTCACTGCTACGAATCGACCGGTTATTTTTTATATGATTTGATTATTCCATTAAGTAACTGTCTTCGGCGCGTTTGATTGTTTTCTTTTTCCATGGGTCGAGTATTGGTTTAACGATAAATCCTATTGTGAATATGACGACACCAAATAATGCGAGGCATATGAGATTGTATATGAGTATTTCTGGTACGACGCCTCCAACCGCTTCTCTTAAAGCATCTACAGCATAAGTAAATGGCAAATATGGATGTATGGCTTGGAAGAATTTTGGTGTGACTTGTATTGGGAATGTTCCGCCTCCGCCTGCTATTTGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //