Array 1 1332720-1330770 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397128.1 Streptococcus equinus ATCC 700338 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1332719 36 100.0 30 .................................... GATAAATTCATCTGCCATCAGCACCTCGTA 1332653 36 100.0 30 .................................... AGCGGATTTAGAATCGTTTTCTGAACAGCC 1332587 36 100.0 30 .................................... TTTGTCTATCGATGAAATATGTGAACGCAG 1332521 36 100.0 30 .................................... AATCTATCGGTGGTATTGAAACGCTATTCA 1332455 36 100.0 30 .................................... AGATTAGTACAATTGCTAGCTGAGTTTATC 1332389 36 100.0 30 .................................... ACGTATGACGGTGAGTTAGCAAAAGTCGTT 1332323 36 100.0 30 .................................... TGATACAATTAAAGCTTATTTTAAAGAAAA 1332257 36 100.0 30 .................................... CACTTTCGTGCGAGGGGAGCATCTTAAAAA 1332191 36 100.0 30 .................................... TTTAAATGGGTAACCGAACTCTAAAATTAT 1332125 36 100.0 30 .................................... CGGCAATGCCAAAATGCTTAGTCGAGCATA 1332059 36 100.0 30 .................................... CAGATGACAGAGTAGAAAGACGAATGAAAG 1331993 36 100.0 30 .................................... CCTTCTTCAGCTTGGTGTAGTGTAGAAACA 1331927 36 100.0 30 .................................... ACATACATGCGTGAAAATTACGACGGGAAA 1331861 36 100.0 30 .................................... TGCTACACGAATTCTGTCACCATCTACATA 1331795 36 100.0 30 .................................... AATGTTTTTTGCGGTAGTTGTTGCTGTGTT 1331729 36 100.0 30 .................................... CGAATATTTGAAGCAAGACCTTACAGATAA 1331663 36 100.0 30 .................................... TCACGACATGGGGCTCGGGAAAACGTACAC 1331597 36 100.0 30 .................................... ACTTGGAATAGTGCTAGACCAGCCACTTGT 1331531 36 100.0 30 .................................... CCAGAACCAAGTCACTTAGACACCGTTGCA 1331465 36 100.0 30 .................................... GGTCTCAGGAAAATATATGTATGGAATGCA 1331399 36 100.0 30 .................................... CGTTGTAAAAGTAAAGTGTGCCTTCGTTCC 1331333 36 100.0 30 .................................... CTAAAAGTTGGTGGTCTGAACTTTGGTCTA 1331267 36 100.0 30 .................................... TAGGGGCGTAAATCGTCACTACGAGCCCAC 1331201 36 100.0 30 .................................... GACTGGTGTCAGAGGTGAAGTGGACGAACA 1331135 36 100.0 30 .................................... TCTTCAAACGTCATATCAATACCATTTGGT 1331069 36 100.0 30 .................................... AAATCGGAGTGTATGAAAATTACTACGATT 1331003 36 100.0 30 .................................... ATGCACGATTACTATCTTTCTATCTATATT 1330937 36 100.0 30 .................................... AAGCCATATGTTGAATAAGCATGCGCAACG 1330871 36 100.0 30 .................................... CAATTTATCATCTAACGTTAAGAAGCTCAA 1330805 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTTGAACGCGAAATCGCCCTCTGGTTTGGAGAATAAATAAAAGGAATTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TCATTCCTCCTAATTAGAGGTAGACCGTGTAGTTTTATAGCTGTGCTGTTTATTTTACCATCTTATGATGCTTTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACACATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1334982-1333361 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397128.1 Streptococcus equinus ATCC 700338 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1334981 36 100.0 30 .................................... AAGCTCTTAATAAGCTTATCGAACTCGTAG 1334915 36 100.0 30 .................................... TGTTTCTGATTCAATAAGCATTGCAACGTG 1334849 36 100.0 30 .................................... TGGGCAATATCTACGAAAATCCAGAGCTTT 1334783 36 100.0 31 .................................... GAATGTTCCAACGAGCATGACACCAAGCCTG 1334716 36 100.0 30 .................................... CCCATACAGTTTGATGATTGATTCTAGTGC 1334650 36 100.0 30 .................................... CCGTTTGATGTGTTAGAAAGTTTCATTGAG 1334584 36 100.0 30 .................................... TTGAGAAAAAACATGGTATGCACGGAACAA 1334518 36 100.0 30 .................................... GACGGAATAAGTGAACCAACTTACTATGTT 1334452 36 100.0 30 .................................... AAGCTTTAAAGTGGGTTCTTGAAAACGAGG 1334386 36 100.0 30 .................................... AACAATTGTGCCACTGCACAATAAAGACCT 1334320 36 100.0 30 .................................... AGGCGTTAACGCTAGCTTATTTAGCGGTCT 1334254 36 97.2 30 .................C.................. CACAACCGGATAAGTGCCAGCTGGAATTGC 1334188 36 100.0 30 .................................... TTGTTCTGTCATATTCTCACCCCCTTTCTA 1334122 36 100.0 30 .................................... TATCGTAAACGAAAACATGACTGTCATTGA 1334056 36 100.0 30 .................................... GTTGACTGGTGGCGAGATTACGAACGCACT 1333990 36 100.0 30 .................................... GGCAGAGGGATATTAAAATGACTAATTTAT 1333924 36 100.0 30 .................................... TTGAAAATCAAATTTAAAAGCTTCTGGACA 1333858 36 100.0 30 .................................... CTGCAATGTCGCCGAATTTTGTAATGGCGC 1333792 36 100.0 30 .................................... CTCACGGCTCGAAGAGAAATTCGACGATAA 1333726 36 100.0 30 .................................... ATTGTCTGTGGAGCTTTCAGATGGTGATAT 1333660 36 100.0 30 .................................... TGTCCACAAATACATACCTTTAACTAAAAC 1333594 36 100.0 30 .................................... AAACATTTCTGGCGTATAGTTCAGCTCCTT 1333528 36 100.0 30 .................................... GCACACAATTTCAGTTGTAGCTAATTTTGT 1333462 36 100.0 30 .................................... ATTTGCTTTTACAACATTAGCGCTGTAAAC 1333396 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATATAGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATTTAGATGAAGGGTTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTGAAGTTGGTTTTATTACTTTAATTCAAGCAGCCCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTCGCTGATCGAGAATATGTTAATTATTCAGAATGTTTGGCACAAGTTTTAGAGAAAAAATTAAAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTTAGGTATAATATAGTTAAAAATAATGAACTATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTTGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTGAGCAGAAATAGTATTCTCAGAAACGTACTAAATTTTAGTGAAAACGCCTTTCAACATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //