Array 1 84613-83487 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOOA01000004.1 Escherichia coli strain MOD1-EC6944 MOD1-EC6944_4_length_194576_cov_51.5206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84612 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 84551 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 84490 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 84429 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 84368 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 84307 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 84246 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 84185 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 84124 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 84063 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 84002 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 83941 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 83880 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 83819 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 83759 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 83698 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 83637 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 83576 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 83515 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101546-100114 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOOA01000004.1 Escherichia coli strain MOD1-EC6944 MOD1-EC6944_4_length_194576_cov_51.5206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101545 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 101484 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 101423 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 101362 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 101301 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 101240 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 101179 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 101118 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 101057 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 100996 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 100935 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 100874 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 100813 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 100752 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 100691 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 100630 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 100569 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 100508 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 100447 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 100386 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 100325 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 100264 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 100203 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 100142 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //