Array 1 6-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCUG01000021.1 Vibrio metoecus strain 2010V-1005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 ...........T................ TAGTAAGAACGTTAATACAAACGACATAACGC 66 28 100.0 32 ............................ TTTACACTTTCCGTTGTACTCAGTTTCATCGT 126 28 100.0 32 ............................ TGCTGGTAAGTCGTAACTCGCGCCCGTCTCTT 186 28 100.0 32 ............................ AAGCAGCATACCGAGCAGCAGACCGAGCAGCA A [206] 247 28 96.4 32 ...........T................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 307 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAATGG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATTCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 572-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCUG01000032.1 Vibrio metoecus strain 2010V-1005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 571 28 100.0 32 ............................ AAACGGCCACCGATAAGCTCAAAGCTCGGCAC 511 28 100.0 32 ............................ ATTCGCACGAATGATCACTTCACCCAGCACAT G [499] 450 28 100.0 32 ............................ TTGAGCGAGTAGCGCAGATAGCCCAAGGTCGC 390 28 100.0 32 ............................ ATACGTGCCGATGAACCCTGTTTCAATACTGC 330 28 100.0 32 ............................ CAAAGCAAAAGCAAAAGCAAAAAGCCTTATCC 270 28 100.0 33 ............................ GGAATCAGTTACTAGTTTAACCGGAATCAATTA 209 28 100.0 33 ............................ AAGCCGGAGGTGGTCGCGGTACCGCCGTTCGAA 148 28 100.0 33 ............................ TATGAGCGACGTGCCGGCGGATGAAATCATCCA 87 28 100.0 34 ............................ TTCGGCATCAAGTATGCCGTATTACTGGATAACG 25 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.9 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCCTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTACGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAGGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : G # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 542-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCUG01000085.1 Vibrio metoecus strain 2010V-1005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 541 28 100.0 31 ............................ TTCAGCCTTCTCGTTTCTTCACCCAAGGCGT 482 28 100.0 32 ............................ AGCCACAAACGCTGGATCTCTTTGCGAAAGGC 422 28 100.0 32 ............................ ACTACCCGAAAACGGGTCGAGTATTACCTCAC 362 28 100.0 32 ............................ ATTAATGTCAAGCAAAGATAATGAAGCTGAGC 302 28 100.0 32 ............................ ATTAACGAGGCTGTGAGTAACCTATTATGAGT 242 28 100.0 33 ............................ ACAGAGCAAGGGCGACGCTGCGTATCAAAAGCA 181 28 100.0 33 ............................ TTCACTGTCTACGTTCGCAGGGATCCGGTCGTA 120 28 100.0 32 ............................ TGTATTGCTGTACGAATAGCCTCTGTGGTTCT 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : A # Right flank : ATGAATTGAGGTCAACGATTCGTTTGCATTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6-1832 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCUG01000058.1 Vibrio metoecus strain 2010V-1005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 32 ...........C................ TTATTCACCTGTTCATAATTTAAAGTGTTCAC 66 28 96.4 32 ...........C................ TCTCTTTTAAGATTTTGACTTGCTCTTTGCGA 126 28 96.4 32 ...........C................ TGACCATGAATTTTTGATTTAATGCCAATCTC 186 28 96.4 32 ...........C................ TGAATTTCCCTGGCTTCATAAGTTATCCAAAC 246 28 96.4 32 ...........C................ AGAAAAGAATTCAGTATGTGTAGAGCCAGGAT C [254] 307 28 96.4 32 ...........C................ ATTTGGTAGCCGTGAGGTGTGGTTAGGCTATG 367 28 96.4 32 ...........C................ ATCAAAGAATGGGACATGCAACACAACGTGCT 427 28 100.0 32 ............................ CGTAGGAACGCAGCAGATCAGAAAGTATATCC 487 28 100.0 32 ............................ TTCAGGAAGATCGTGCCAGTCAGGGTCAAAGC 547 28 100.0 32 ............................ GCCAACTGAAAAATGTGGAGGATCTAAAACAA 607 28 100.0 33 ............................ GATCAGCCTATGATCCGCTAATGAAGTAAGAAC 668 28 100.0 31 ............................ GCAAGAAGCAACAGAAAAACAAATAAAATGA 727 28 100.0 32 ............................ AAACGCGAACTCATTAAGAGCACTTTGCCCTC 787 28 100.0 32 ............................ TTTGGCTGTCACCCTCTTGCGTTGATGCTTTG 847 28 100.0 32 ............................ ATCACATCAATTGGCGCTCAGAAAATTTCAGA 907 28 100.0 31 ............................ AAGAAAGAAAATCACGCGAATTTTACCAACA 966 28 100.0 32 ............................ TGATTACTATCAGGAGCCAACCGTTGGCGAAC 1026 28 96.4 32 ...........C................ TCCTGGGCACGCAAACCGCGACATCTCTGATC 1086 28 100.0 32 ............................ TGAAATATCAAAGGGCGTTGAGATTTCAGCGG 1146 28 100.0 32 ............................ GTTCATAGTTATTCGGAATGCGGGCGGAGTTT 1206 28 100.0 30 ............................ ATGCTGGAATTGACTCTGAGATCGCTCTTT 1264 28 100.0 32 ............................ TAGTTGGTAGAGATGCTCCAGACGGCAAGAAT 1324 28 100.0 31 ............................ TAACGAGTCAGGTGCAAAAAATACCGATTCA 1383 28 100.0 32 ............................ GTCACGGCTTAGGCGGTCGTGAGCGTCTTTAA 1443 28 100.0 32 ............................ CACAGTTAGTGCGAGCGTGGAAAGACCTTGCC 1503 28 96.4 33 .........................T.. AGCATCAAAGCTACTCACGCTAACCTCTGGCGA 1564 28 100.0 32 ............................ GTAGACCAAATCCCTAACTTTATTTCCTCGCC 1624 28 100.0 32 ............................ GCCATTGTTGGGTGTTCGATACTGATCGGCAA 1684 28 100.0 33 ............................ TTTGTTGTGTGCTATCGCAATGATCATAAGTAA 1745 28 100.0 32 ............................ GCCAAGAACGTTTGTTGCTTGAATCGTCTACC 1805 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTAAG # Right flank : TGAAGAGAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //