Array 1 428647-432996 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGYV010000001.1 Psychrobacter ciconiae isolate Psychrobacter ciconiae 176-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 428647 28 100.0 32 ............................ AATCCCGAATTGCCGTTTGATTTCTTGGTGAA 428707 28 100.0 32 ............................ TTTGAGAAAAGCCCTGCGATGTCGAGTCGGTC 428767 28 100.0 32 ............................ AATTATTTTAAGCGACCGCATCATGGCATATA 428827 28 100.0 32 ............................ AGCATCAAAAGCTTGAGCAACCAACGTACTTA 428887 28 100.0 32 ............................ AATATCAAGGTCTGAGCGGTCAACGCCGGTAT 428947 28 100.0 32 ............................ TCTCATGTGGTCCTGTGGTGCCTGCTCAAAAA 429007 28 100.0 32 ............................ GCTGAAACGATGGAAAATAACGGTCTAGTCGC 429067 28 100.0 32 ............................ TAAGACCCGCCCATGAATTAATTGAGTTAAGA 429127 28 100.0 32 ............................ AGTAGCGGTCACAATTTGGTCGCAAAGGCTAT 429187 28 100.0 32 ............................ TCGTTTGCTCCAGTGGTCTTTGATACGTCAGT 429247 28 100.0 32 ............................ TGACGCACGAATACCGCCATTCCACTATTTTT 429307 28 100.0 32 ............................ ATAGGCAAGTAGTCCACACGCAGACAATCCGC 429367 28 100.0 32 ............................ AATCACGCGCCGCAGGGTCAGCGCTATCATGA 429427 28 100.0 32 ............................ TCAGTGACTAAGTAACCGATATTTTTATTCTT 429487 28 100.0 32 ............................ GATAACTTAAGACCTGACCCGAAGCTGGAGCG 429547 28 100.0 32 ............................ ATTAGACTGTCGGCTGACAGCAGCGGCAACGT 429607 28 100.0 32 ............................ TACCAACAGTTGATACTTATAATGGCCGCGCT 429667 28 100.0 32 ............................ TTATTGCGAATCAACTTTGTCATGCCGATTTC 429727 28 100.0 32 ............................ AAAAATAGACTCACCGGAATCTAACATCAGCG 429787 28 100.0 32 ............................ TTAGCGATACGCTCATTGTTATAAGCAACCAG 429847 28 100.0 32 ............................ AATATTTGCGCCATTGCCTCGCTTGACACCAT 429907 28 100.0 32 ............................ CGTGACAAGATGCAGCCGTGGCTTGAACCTGA 429967 28 100.0 32 ............................ CGTCTCCTTATCGCCATGTTTTCGCATAGCTC 430027 28 100.0 32 ............................ ATTCTCTCATGGCTTCCGCCATACTCACCGAT 430087 28 100.0 32 ............................ CTAAGCTTGTTCGCGTAATATAGTTTGGGTGA 430147 28 100.0 32 ............................ TTGTTTGACCAACCAAAACGGATAGCCTTAGC 430207 28 100.0 32 ............................ ATACACAAATGGGAGTAGTCTAATTTAGGGTT 430267 28 100.0 32 ............................ AAACGTCCGGCGGGTTCATGCCAAATCTTGCC 430327 28 100.0 32 ............................ TAGTGGCTGGGTGCAGGGAAGCCCTAGCGATG 430387 28 100.0 32 ............................ ATTGCGGCTGACCTATGACAATATCGCGGTCA 430447 28 100.0 32 ............................ TTCTCCAGCTTGTAGCGCAGGTGCTACGCCAT 430507 28 100.0 32 ............................ TAAACACCGCCTTATCTAGCGTTAGGTAATTG 430567 28 100.0 32 ............................ AATATTTGCGCCATTGCCTCGCTTGACACCAT 430627 28 100.0 32 ............................ TGTTAAGCAGATAAGCAGCCGCAACCACGGTC 430687 28 100.0 32 ............................ AGCAGCGAATTCACACCACTAATTGATACACC 430747 28 100.0 32 ............................ AATACGATACTCAAAACTTTCAACAAATATAT 430807 28 100.0 32 ............................ AATACCCCAAACTTGTGTTTTCCTCATACTTG 430867 28 100.0 32 ............................ GAGCCACTCTCTGACACCAACTTCAGGTTCGG 430927 28 100.0 32 ............................ AAACGGCAAAATGAACTGGAACGATTGGAATA 430987 28 100.0 32 ............................ AAGTCGCGGCGCAATCACGCCGATTGTGTCAA 431047 28 100.0 32 ............................ AATCCAGTGGTCTTTGTTGACGGTGTTGAGCA 431107 28 100.0 32 ............................ GTATGCATCGCTTGTATTTTCTATTTCAAGCA 431167 28 100.0 32 ............................ AAACTGAGCACATCCCAGTGCTTTCAATGTAT 431227 28 100.0 32 ............................ TTGCAGTTCAAAGTCTTTGACGCCGAGCCACT 431287 28 100.0 32 ............................ TCCCAAATCTCCGCAATAAAAAACCACTCAAT 431347 28 100.0 32 ............................ TAAACGCATGCTACGCCACAAGGCGCTTATTC 431407 28 100.0 32 ............................ TAGCACCAAAAATTCTTGATTGTCATCAATAC 431467 28 100.0 32 ............................ AAAGAAACGCAGCAAAGCCACCTGTTAAGCAG 431527 28 100.0 32 ............................ TTGCAGTTCAAAGTCTTTGACGCCGAGCCACT 431587 28 100.0 32 ............................ CTGCAACCAAACCCTGTAGGAGACGCTTCTAG 431647 28 100.0 33 ............................ TACCAAAAAGGGGTATATGTATAACCCCAATCA 431708 28 100.0 32 ............................ TTACCGCGCTTGCAATTGCTGTTATAGACGCC 431768 28 96.4 32 A........................... TTCAACCCAACCCCCACAGCCTCACTCAAGTC 431828 28 100.0 32 ............................ TTATTCAGAAATCACTTTTGAAGAAGTGCTGT 431888 28 100.0 32 ............................ AGTAGTCACAGCTATAGGCATTTGGACTGCTG 431948 28 100.0 32 ............................ CATAAGCAGAGCAACAGCACCATCGATTTTTT 432008 28 100.0 32 ............................ ATGAGCTTTGCTTGTCAAAGTGGCCAATCATG 432068 28 100.0 32 ............................ TGAAGATATCAAAAAAGACGACGTAGCCAATC 432128 28 100.0 32 ............................ AATCAAACTATCGAAGCATAAGGAATATTTAT 432188 28 100.0 32 ............................ TAAACGGCGCGTTGCAAGGTGGTGATATGTAT 432248 28 100.0 32 ............................ AACCGACGCCCGATACTCAAGCAGTGATTTAT 432308 28 100.0 32 ............................ TAAAGGATTTTGACAGTGGGGCCGCGCAGAAA 432368 28 100.0 32 ............................ TATAAATTTAGGTATAGCAAAAGCCCTTCTAT 432428 28 100.0 32 ............................ TTGCTTGCCTCGCTTGCGCCATAAAACTTACC 432488 28 100.0 32 ............................ TTGTTCGTGCCAAGCTTGCAATAGCTCAATAG 432548 28 100.0 32 ............................ AGTATCAAGACAAGTGATGGTGACTCAGTTAG 432608 28 100.0 32 ............................ TGCAAGGCGCATGGCTTCTTCATTTCGTTTGA 432668 28 96.4 32 ....................C....... CGATTGCGCCACTTGCGTAGCGTTTAGCAGGG 432728 28 100.0 32 ............................ ATAACGCTGTCATAAGGGAATCCGTCAGCGTG 432788 28 100.0 32 ............................ TATAGGGAGGGTGGTTTTGGGCAATTTGTAGA 432848 28 100.0 32 ............................ GTTTGCGCCGAGCCATAACTATTAAGCGACAC 432908 28 100.0 32 ............................ TCAAGGGTGTTGAGCAGTCGCCTTTTATCGCC 432968 28 96.4 0 ............G............... | G [432992] ========== ====== ====== ====== ============================ ================================= ================== 73 28 99.9 32 GTTTGCCATCGCATAGATGGTTTAGAAA # Left flank : GCGCTGGGCAAAGGCGCTTTATAAACGCTTGGCGGACGGCTTTGGCATTAAGTTTGTTCGCGAGGAAGGTAAAAACGCTCAAGATGATTTGGGCGATATCGCCAACAGCTATCTTGATCACGGCAATTATATCGCTTACGGTTACGCCGCGGTGGCTTTGCACGGCTTAGGGATTAGCTTTGCGCTGGCGATGCTTCACGGTAAAACGCGCCGCGGTGGTTTGGTGTTTGATGTTGCCGATTTGGTAAAAGATGCTTTGGTCATGCCGCAAGCTTTTGTCTCGGCAAAACTTGGTCATAATCAAAAAGAATTTCGGATGCAATTGATTGAAACTTGCCAAGATCAAGACGTTTTGGATTATATGTTTGGCTTCATTGTTGACACCTGTCAAAAAATCAAATAGTTTCAATGACTTAATAAAGCACTTTAAAAACGATGTGTTTTTACTGTTTCAAGTGGTATATAATTGATACTTAGAGGTTTTTGTTATAAAACTTCTA # Right flank : ATAAACCTTTGATGGTGGTAGATGATCGTGAAAATTTTTATTATCTATCTATATGTACTAATGGGCGGGATAACTATTAGCATATTAGTTAAAAGTCTTGTAAATTCGGACTAAGAATCTTGCTTCTGAAAACAATATCATTAAATGGGATTCGTTACTACAACCGACTTTTAACAATTTTGGTCATCAAATGGTCACCGTTTGGTCACCAAGCACTTGGTCACCGATTTTAAATAAGCAAACTCCTTGCAATCAAGGTTGATTTTGATATTGAAAGAATATTTAAACTGCTCAAACTAATTACCCGAACAAAGAAAATAAAGGTAACTAAATTAGGGGCTTACTTAAATTAAAAGCACAAAAAAACCTCAAGCAAATCATTACTTGAGGTTGAAACTTTTGCAAAGCTTAAGTTTTAAATATGGCGCAGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTTGCCATCGCATAGATGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //