Array 1 16704-15113 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUEI01000030.1 Azoarcus sp. TTM-91 NODE_30_length_47373_cov_22.6446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16703 28 100.0 33 ............................ ATCCTCGCCCACGCCGAAGCTGCCGGCCGCGAA 16642 28 100.0 33 ............................ TCGCGGTATTCAAAACATCCGCCACGGGCTCGA 16581 28 100.0 32 ............................ ATGAGGCCATCAGCAGCGCAGAGGGCGAGACT 16521 28 100.0 32 ............................ TGAGATGCGATAGTGCCGGAGCGGCCAATAGA 16461 28 100.0 32 ............................ ATGTATTCGAGGAGCTGGCGATCGACTGGAAC 16401 28 96.4 32 ..................T......... TGATGTAGCTCAGAAGGTGCCTGAGGTTAAGC 16341 28 100.0 32 ............................ AATAGAAAGCCGAAAAGGCGGCGCAGTGGCCC 16281 28 100.0 32 ............................ ATGCCGAGGATGAACAGGCGCCCCACCAGCGG 16221 28 100.0 32 ............................ ACGAGCGGGGCCACCCAGGCGGCGAACAGGGT 16161 28 100.0 32 ............................ ATCTCGGCCTCCCACAGTTCCAGGCTGTAGGG 16101 28 100.0 32 ............................ GTTCCGCTCTTCCAGCATGAGTACGACGCCTA 16041 28 100.0 32 ............................ GAAGAGGGCGATGCCGAGCTGGGCAATCATGC 15981 28 100.0 32 ............................ ACGTACAGGGCCGTGGGCTTGGTCATGCTGCC 15921 28 100.0 32 ............................ TATGCAGCCTCCTGCAACTTCGCGCTGCGCGG 15861 28 100.0 32 ............................ TCATGGCGGGCGACGTGGTGCAGATGGCGGAC 15801 28 100.0 32 ............................ GCCTGCGCTACGTGCGCGAAATCTGGGGGCCC 15741 28 100.0 32 ............................ CGGGAGACATCCGTGGCGATGTCTCCGACAAC 15681 28 100.0 32 ............................ TAAGGGGATGAGTTCCTCGCCCTTCTCCGCCA 15621 28 100.0 32 ............................ ATCCAGTACCGGTAGCCGTTCGCGTCTGGCCA 15561 28 100.0 32 ............................ GTGCTACGCCCGAGCAAACCGCTCAAGCCGGC 15501 28 100.0 33 ............................ ACTTGGGCAGCCCGGCCGTCAGCAGCTCATCGA 15440 28 100.0 32 ............................ TGTTGAGCTGGCGTCAGCTCTTCCAGCCAAGC 15380 28 100.0 32 ............................ TCGCCCCTCGTCGGCGCCAGCCTGATCGACCT 15320 28 100.0 32 ............................ TGAGTACCGCCGCCATCGGCCAAGGCCGCTTG 15260 28 100.0 32 ............................ CGCCCAGGCCGCGAGGCTGGATGCCACGGCCA 15200 28 100.0 32 ............................ GTGCGCACCGCTGACCTCCTCGCGCTGCCGAC 15140 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GCTCACTGCCGAACAGGCAGCTCAGAAA # Left flank : CACACCGGCTTTGCCCAGTTCCCGCATCGCAGCCTGGGTGATGGATGTTCCGGTACCGAGCAGCAGCGTGGTTGTATTGGCGATGGGTATGTTCCAGTACAGGGATTGTTTTCCTTGATCCGTTACGTACTCCACCCGGCCACCATTGACCAGCACCCGGCAATGCTCCAGGTAATAGAGATTGGCGCGCTTGGAGTGCAGGATGGTCTTGAGGTCGCCCGATGAGAACGGCTGCATTTTTGCTTATATCTTTGGCATTGGTGGGCAAGGAGATGATGGCATTGGTGAATTTCATCCTGCATACAGAGATATGCTGGGCTGTGAGTTTTTTCGCGGCCGGATGCGAATAGATGGCGATCCCCGCCGCCGACCCTCTTTTCCACGCATACTCCAGAGGCCTTGCGGCATATGGGCTTTGGCTGCGGGGGAAAATTTGGGTCTGAAGAGGGGTCTTGGTGTTTTTTCTTTAAAAATTAGTGGGTTGGTTCTGGTTTTGTCTA # Right flank : GCCAAGTCGTCAGGGAGCAACCGTAGAGCATGGCTCACAGCCTCCGCCGCATCTCACCCCAGCCGCTGCGCCCGATACCGCCCCAGCCGTTCCGACACCCTTTCCGCGCAGGCGCTGACTTTGCGGGCGGTGGGGCCGTCCCAGTCGGGGTCGCAGGCGTTGGCGGGGCCCATGGCGGTGATGGCGAGGGCGAGGGCGCCGGTGCTGTCGAACACCGGGGCGGAGAAGGCGTTGATGCCGGGGATAGGGGTGCCGACGACGCGCGACAGGCCGTGCTGGCGGACTTCGGCCAGCACTTCGTCCACATGGCGGCGGGACAGCCGCAGCGCCGGCTGCGGGTTGGTGGCGTAGCGGGCGAGTTCTTCGTCGAGGATGGGGCGGGTGACGCGGTCCGGCATGAAGGCGGCGAAGACGCGGCCGGTGGCGGACAGCAGCAGCGGCGTCATCACCGTGCCGGGGCGCAGGTTCACGTGGATCTGCTTGCTGCATTCCTCGATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGAACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGACAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 26269-29054 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUEI01000030.1 Azoarcus sp. TTM-91 NODE_30_length_47373_cov_22.6446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26269 28 100.0 32 ............................ TTGAGGCGCAGCAGCGCCTGCCGCTCCAGCGT 26329 28 100.0 32 ............................ TTGTGGTCGCCGGCGAAGATGTGGGTGACGTT 26389 28 100.0 32 ............................ TAGCTGCCTGGGCGGAGAAGCCGACGCAAACC 26449 28 100.0 32 ............................ AACTCCCACCACTTCTCCCCTGCCTCTTCCAG 26509 28 100.0 32 ............................ TTTACGCCTCCGCAAACATCGGTCGTTTTCAG 26569 28 100.0 32 ............................ TGACGATTCCGCGTTTTTCCGCTTCGTCTAAG 26629 28 100.0 32 ............................ AGCGGGAAACAGCAGATCTTGCGACTCCCAAC 26689 28 100.0 32 ............................ TGTTTCGGGTGGCGCCGCCCCTCCGCCCTCGT 26749 28 100.0 33 ............................ TGCGGGGATCTGGTCAAAATGGTCCACCGCCGA 26810 28 100.0 32 ............................ TTAGCCCCAGAAGCTGGCAACGGATAAAGCTG 26870 28 100.0 32 ............................ TATTGAGTTGTTCGGCAAGATTATTGTCCTTG 26930 28 100.0 32 ............................ TGAGCCTGAGCCGCCGCGAGTTCGGAGCGCAG 26990 28 100.0 32 ............................ TGAGTCGCCCAGGCGTTGCGGCAACTCTCCTC 27050 28 100.0 32 ............................ ATGTAGCGCATGACGCCGCCGCGCTCGCTCTT 27110 28 100.0 32 ............................ GTTTGCAAGACTGGCCGGACTGCCGGCGACAA 27170 28 100.0 32 ............................ AGCCCGTTAACGTGATTGTCACGAAAATAGGT 27230 28 100.0 32 ............................ TGGTCAGAACCCGTGCAAGTCTCGCCACTACC 27290 28 100.0 32 ............................ ACTCGGACAAGGTATTCCCGGCAACGGCGAAC 27350 28 100.0 32 ............................ TTCGGATCAACTTTAAGCGCAGCCAACAAACG 27410 28 100.0 32 ............................ GTGGCCGTCCGCCGAAAGCTGGTGGGCCGATG 27470 28 100.0 32 ............................ AAGCTTCGGCGAGCTGAGGCAGCACTTGCCCA 27530 28 100.0 32 ............................ TGCACCTTCTTGATGTATTTGTCCGGCTGGCC 27590 28 100.0 32 ............................ TCAAAACGCCCCGTTGTCGCACCACCTGATGA 27650 28 100.0 32 ............................ TATGGTTAATCGTGATTGTCACGATAAATACA 27710 28 100.0 32 ............................ TGGAACTGTTGGGCTGCGATACGCATGGCGAT 27770 28 100.0 32 ............................ ATCGCGTGCGGTGGGGTGGATCAAGTACAAGT 27830 28 100.0 32 ............................ TGGAGCAAAGGCAGGCTCACGCAAGCGTGCTT 27890 28 100.0 32 ............................ CAAATCAGGCTGCGGCGGCTGTGCAGCGGCTG 27950 28 100.0 32 ............................ TAACTAATCTTTCATAAGCCCGCTTACGAGAT 28010 28 100.0 32 ............................ AGTGCCTCTACGCGGCCGCGCAATCGGTCGGC 28070 28 100.0 32 ............................ TACTCAGACGGCAAAGCCGAAACGCTGACGCT 28130 28 100.0 32 ............................ TTGATCTGCATAGGCTTTTTCTGGTGCCGTCA 28190 28 100.0 32 ............................ TGCGCGAAGCAGGCGTTCCGGAGATCGAAATA 28250 28 100.0 32 ............................ GGTTGCCGATCCAGCCGATTAGGCCGATCAGG 28310 28 100.0 32 ............................ TGAAAACCCAGCACTTCACGGTGACGGCGCGC 28370 28 100.0 32 ............................ ATGTGCAACCGCACCCTGCAAGACGCCCGCCT 28430 28 100.0 32 ............................ ATGCGCAAACGGGATAACGAAGCAAAGCTTGC 28490 28 100.0 32 ............................ GCTACCGGACTGGCACAACACCAGCTGATATT 28550 28 100.0 33 ............................ AGGCCGCCGAAGCGCTCGGCGTCACCCCCACCA 28611 28 100.0 32 ............................ AGCAACAACCCGTCCACCGGCTGGGTAGCGCC 28671 28 100.0 32 ............................ CTCCACGCCGGGCACCGCCGACAGCAGCGTCT 28731 28 100.0 32 ............................ ATCCGGCCCTGAGAGCGCGGGGTCATTGCCCG 28791 28 100.0 32 ............................ TACGAGTTCCCGACGCGCGGACGCAATCTGAT 28851 28 100.0 32 ............................ ACCCTTGCCTTCAGTCGCCGAGGTGGATTCAA 28911 28 96.4 32 ..........................G. GAGCCGGCCGGCAGCGACAAGCTGCCCGAGCC 28971 28 78.6 29 ............GTG......CT....G CAGCCTTTCCCGAACTCGGTGCCGGCGGC 29028 27 75.0 0 A......A...A....C..-..TG.... | ========== ====== ====== ====== ============================ ================================= ================== 47 28 98.9 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : CCTGGAGCAGCTCATGCAATTGAACTGGTTGCAGGGCATGCGGGACCACGTCGAGGTGGGCGAACATCGCGCCACGCCGAAGGACGCCGCCCACCGCGTAGTGCGCCGCATCCAGGCCAAGAGCAACCCGGAGCGCCTTCGGCGCCGCCTCCTCAAGCGCACCCCAGGCATGGATGCGCAGACCGCGGCACAGCGCATCCCCGACAGCGCCGCGGAGCAGCTGAACCTGCCCTTCATCGCCCTCGCCAGCAGCAGCAGCCGGCAACGCTTCCCGCTCTTCATCGAGCATGGGCCACTACAGAAAGAAGCCAGTCCCGGCCCCTTCAACGCCTACGGGCTCAGCCCCACCTCCACAATCCCCTGGTTCTGACCCTTTTTTTTCGACGACCGCCCCCGTCCAATGAAATCAATCACTTGGACGGGGCGTTATTTTTTGGGTTTTGTTCGCAGGAGATGCGTTCTTTCTTTAAAAATCAGCGAACTCTGGACGTTTCTCTCTA # Right flank : AACCGCGGTTTAAACAGCAACCGGGCAAACGCCTGCCATTACCCGGGCCTCGAAAACCGGAAGACACGGCGCCGCCCGCATGGCGGCTGGCAGCGGGCCAGCGCGCCGCCGTGCTGCGGGCGGCGCCGGCGAAGGCCACGGGCTTACTTCAACCCGGCCAGATAATCAGCCATGGTGTCGATGTTCTGCGCGCCCAGGCGGGTGACCGCCGCCGTCATCGGCGCGTAGATGCGCTCGCCGGACTGGGTGAGGTAACGGCGCAGACTGCGGCGGATGTACTCCGGCTGCTGGCCGGCGAGGCGGGGGAAGGTTTCGGCGCCGCGCGCATCCGGCTGGTGGCAGGTGGCGCACAGTTGGGCGAACAGCTCCGCGCCCCTGGCGGTTCCCGGCGGGCCGGACGGCAGCGGGCGAGCGGCGGCGTAGTAGCTGGCGATGGCGGCCTTGTCGCGCTCGCTCAGCACCTTCATCAGGCCCTGCATGAATTCATCTTTGCGCCGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6767-3216 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUEI01000063.1 Azoarcus sp. TTM-91 NODE_63_length_27491_cov_32.0981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 6766 32 100.0 36 ................................ TTTTCGAACGCGGCGAGGCGCTGCTGGGCTTCCAGC 6698 32 100.0 38 ................................ GCCGCGGGCATCCTCCAGAAACTCGGCAATCACATCCC 6628 32 100.0 37 ................................ TTGTGCGGTAGTAGTACCAGACGCCGCCGCCCCTTAG 6559 32 100.0 36 ................................ GGCAACCTCGATGCCTTGAACGAGGTGGGTGAGTAC 6491 32 100.0 33 ................................ AGCGCCATCTTCGGCAAAGCCACGCTCACCGAT 6426 32 100.0 36 ................................ GATTTCCGCCCATTTCAGTTTGGCGGCTGGTAGGTC 6358 32 100.0 36 ................................ AGTGCAACGGCGGCAATCCCGGTCGCGCTGCTGGCC 6290 32 100.0 36 ................................ GAGCTGTGGGACAAGCTGATGGCTGCGCCCCTCGAA 6222 32 100.0 35 ................................ TTCGCCACCTTGCCCATCGCCTCAGCGATTTCATC 6155 32 100.0 36 ................................ GCATAACCCGGCTGATCGTCCGCGTTGAGTACGCGG 6087 32 100.0 35 ................................ TTGTAGTAGCGGCGGCGGAACAGGGTGGCGGACTC 6020 32 100.0 36 ................................ GAGGAGATCCTCGCCGAGCGCAAGGCCCGCTTGCTC 5952 32 100.0 36 ................................ GAGGCGGATCTGCTCGACAAAGGCAAGATGGACCTC 5884 32 100.0 34 ................................ ATCCGCTCCTCTCGTGGCTCGTCTAGGCACTCTG 5818 32 100.0 34 ................................ GTCGGCCATGCCGAAGCCCTCGCCGCGCGCCCAG 5752 32 100.0 36 ................................ CGCACCGCCTGCGAGCGCATCGAGCGCGCCCACCGC 5684 32 100.0 35 ................................ GGCGGCAGCGCCTCTCCCTGGAGCAATGGCACCGG 5617 32 100.0 35 ................................ GGCCATGACCGCGCGGGCGCCGTAGGTGTTGCCGC 5550 32 100.0 34 ................................ CAGGTCGCGCAGCGTGTCGCGGGCGGCCTTGACC 5484 32 100.0 36 ................................ GGCGCACCCAGCGACAAGGTGCTGAGCGATCAAATC 5416 32 100.0 35 ................................ AACGGCACCGACACATGGATGGTCATGTCCGGCAC 5349 32 100.0 35 ................................ TGCTTGCGCGGGTCCGCCATGGCGTCGCGCTGCGT 5282 32 100.0 36 ................................ AATGCCCGACTGCGCAGCGAATTGCCGGAAGCCTGG 5214 32 100.0 35 ................................ CCGAAGTCCTTGTAGGCCCGGTTGCTCACGTCCAT 5147 32 100.0 35 ................................ CAACCCCCGACAGCGCCATCGAGCCCGTGCCGGAT 5080 32 100.0 35 ................................ ACGCGCCTGGGCACGCAGGGTTTCGAGGGCGGCGG 5013 32 100.0 34 ................................ CAGGGCGACGACGCGAGCCAGCAGGAAGACTGGC 4947 32 100.0 38 ................................ CAGCAGCGCATCACCGATCAATACCTGCTCGACTTCGC 4877 32 100.0 38 ................................ AACGCGGCCGGCAGCGGTGCGGACTTGCTCAACGTCAG 4807 32 100.0 38 ................................ ATTGCCGGCGAGGGCGCACGCTTCGACGAGGCGGCCGC 4737 32 100.0 35 ................................ GTCAACGCCTACAGCGAGCGCAACCACGTCAATTT 4670 32 100.0 35 ................................ AACGGCTTCAGCTGCGATACCCCGCGCCGCTTCGC 4603 32 100.0 36 ................................ TTGTCCTTGACATCGCTTGGCGGCGGAGCCTGCAAG 4535 32 100.0 36 ................................ CTTCGCCTCGATCAGCGCCGGCGGGGATGGCGGCCC 4467 32 100.0 36 ................................ GTTGGTGGTGTCGTAGTCGCGCATGCGCTCCACCAG 4399 32 100.0 35 ................................ GCGCAGGTGCTGCACCTTGCCGTTCTGCCAGCTGC 4332 32 100.0 39 ................................ CTCCTTTTTTCTTTGTGCGGGTTGTGCGGAATAGGTGGG 4261 32 100.0 34 ................................ GAGGAGGCGGTGGAGGCCAACATCCATATCGCCG 4195 32 100.0 36 ................................ TGGCGGTGATCCAGGCCGCCGGCCTGGAGCCCGAAG 4127 32 100.0 35 ................................ AAATTCGCCGTGCTTGAGCGCTGCATGGTCGATGC 4060 32 100.0 36 ................................ ATCGGCTGAACCCGGACCTCCCCGAGTTGCTCTTCG 3992 32 100.0 35 ................................ AGCAGCACGGTGTATTCAGGGCCCGAAAGCAACAC 3925 32 100.0 37 ................................ AACGGCATCACGATCTTTCCGGAACCTAAGAAGGTCG 3856 32 100.0 35 ................................ GCCTGGGCGATCTCCACGTCCTCTTGAGCAGCTTC 3789 32 100.0 36 ................................ TGGAGGGGCTCCACGGTCACCACCTGGACGTGACGC 3721 32 100.0 36 ................................ ATTCGCTTAACCCCGATCAACGTCACTTTCATCGCA 3653 32 100.0 36 ................................ CTCGGTGAGACGGAGAAGAAAGTCAGAAGCCTCGTC 3585 32 100.0 34 ................................ AAGCGGAAGTGCGTCGGCCTGGCTGAGTCTTGCC 3519 32 100.0 35 ................................ GCGCCGCGCAGGTCCGCGCCGCCCAGGTCCGCGCC 3452 32 100.0 37 ................................ GTCCGCGATGACGACGCCAGCCCGATCCCCGAGGCGG 3383 32 100.0 38 ................................ TCGAAGACGCGGGCGCCTTCCAGCAAGCGCACCAGCCC 3313 31 96.9 36 ................-............... ATGGCTCGGGCGCTGGCTATTGCGACGCTGCCTCAC 3246 31 71.9 0 ...........T.........-.CC..TCCTT | ========== ====== ====== ====== ================================ ======================================= ================== 53 32 99.4 36 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : CCTTTCCTGTGGAAGTGAGCCGCCGCCATGATGGTCCTGGTGAGCTATGACGTGAGCACCCGCGAGCCAGCCGGCGAACGCCGCCTGCGCCGGGTCGCCAAGGCCTGCCGCGACTACGGCCAGCGGGTGCAGTTCTCGGTCTTCGAGATCGAGGTCGACCCCGCGCAATGGACGCTGCTCAAGCACCGGCTGATGGAACTGATCGACCCGACGCAGGACAGCTTGCGCTTCTACTACCTCGGCAAGAACTGGAAGACCAAGGTCGAACACATCGGCGCCAAGGCCGCCCTCGACCTGAACGGCCCACTGGTTTTCTGACCGCCTCCGCGAACCCCTAGCTGCCGGGAAAAGTCCGGGAGGTTCGCGTTTTGCTATCCAGCTGATGTAGAAGATATTTTCTTGATCTTGCCAAATTCATTGGCATTTTGCAGGGATTGTCCGTGCAGGTTCGCGGAATCCGGGCGTATTTCCCTTGCCTGGCAAGGTGTTACCTTGACGGA # Right flank : CAATTCGCCGAGCTGAGGTTCTGCGCGCATTGATGCAGAACCATCGTCACAGGGCTTGCCCTCTGCCGGCCCAGCCTCAGTCTCGCAACTCCCGCCCCGTCAGCTTCAGGAACACGTCCTCCAGGTTCGCTGGCCGGTGCAGGTAGCGCAGGCCTTGTTGCTGGGCGAGGTGGGCGAGCAGGGGGGCGGGGTCGTGGACGTAGCAGAAGGCGGTTTCGCCGCTGATTTCGTAGCGGTGGGAGAGGGCGGCGGCGTGGGTGTTGGCCCAGGCGGCGGCGCCGCTGGCGGTGGTGGTGTCGTGGCCGTTCCAGTCGCCGAAGACTTCGACGACTTGCGGTTCGATGTGGGCGGCGATGACTTCGCGCGGGCTGCCGGTGGTGAGGAGGCGACCGGCGTCGAGGATGGCGAGCTGGTCGGAGAGGCGTTCGGCCTCGTCCATGAAGTGGGTGGTGAGGAGCACGGTGGTGCCGCCGCGTATGAGTTGCTTGAGGCGGTCCCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1738-2720 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUEI01000093.1 Azoarcus sp. TTM-91 NODE_93_length_17329_cov_23.666, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 1738 32 100.0 34 ................................ TGGCTCTCGACGGAGCCTGGCGCACTGGCGCGAC 1804 32 100.0 35 ................................ GTACTGCCCAGCGCCCGCTATGTGGACTTGCATGC 1871 32 100.0 36 ................................ CGCGTCAGGCCGCGCTGGTCCATCACGTACTCCAGG 1939 32 100.0 35 ................................ AACGGCCTGCGCTCAATCACGCCGATCCGCGCGGC 2006 32 100.0 36 ................................ TCGCCGCCGTGGTCGCAGCAGGCGCCGATGGTGTGG 2074 32 100.0 36 ................................ GGGTCCGGCGGAGTTGCTGCTGCGTTCGACTTGGAA 2142 32 100.0 35 ................................ CGTATAAGTGCGAAGGATCACTACAACCCCCGCAA 2209 32 100.0 35 ................................ CGCGACGCCTCCGGCGGCACCGATGCCAGCTACCG 2276 32 100.0 35 ................................ CTCATCGCCGAGGGCGGCCGTGGCTGCAGCCATGT 2343 32 100.0 36 ................................ CACGCTGGCGACCAGATTGTCGCGGTGCGCGAGCTG 2411 32 100.0 35 ................................ CTGGTGGATGGTGCCATCTGCTCGGCGGGGCTGGG 2478 32 100.0 38 ................................ AGGAGGATGCGGGCGCTGGCTACTAGGGCCTGATGCAT 2548 32 100.0 36 ................................ GCGCCGGCCCGTGCGATTGTGGCGACCCCGGCGCCG 2616 32 100.0 41 ................................ TCCCAGCAGGCGCCGGCCTTGATGCGCGCGCGCTGGCCAAC 2689 32 96.9 0 ............................C... | ========== ====== ====== ====== ================================ ========================================= ================== 15 32 99.8 36 GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Left flank : CGTCTCACCCGCGCCTGCGTAGTGCACATCATCGGCATCGTCGAAGGCTCGCCGGTGGACCGCATCACCGGCCACAACCTCGCCATCACCGGCAACCGCGAACTCTTCGCCAAGATCCAGCCGCTGCGCGACGCCTACGAGGGCGTGTTCCGCAACCTCGTCAACGCCCTGCCCGTCGCGCCCGGCACCGATCTCTCCCTGCTCCGCCTCTTCCTGCTGGGCGGCATGAACTGGGTCTACCTCTGGTACCACCAGGGCCGCCGCAGCCCCGAAGAAATCGCCCACGCCATGGTGGACATGCTGCGACGCGGCGTGCAGGCCTGAGCGCGAACCCCAAGCTGCCGGCAAAACCCCGGGAGGTTCGCGTTTCCTCAAGCCACTGATCGGAAACCGCTTTTTCCTCGCCGTTCAATTCATCCGGATGAAACCACAGCTTTTTCTGCAGGGTTCGCGGACAAAGGCACACCCAGGCTGAGGAATCAGCGTGTTACGGTGGCAGA # Right flank : CCGCTTGATGCGCTCGCGCTCGCGCAATTTGCGCCGCGTTCCTCCCTGCACAGTTCGCTCCCCCGGTCCAGCCGCAGCAGTTCTGCCGGCTTGGCCGGGGAAAGCGGCCTCAGGTTTTGAGAGCCTTCTTGTCGCTCTCCCCCCAGAAGCGCTCCATCGCGATGTAGGTGTAGGAGGCGCTCCATCCGATCAGGAGCAGGCCGTTGAGGGCTTCCACGCCGGCCATCAGGCGCAGGTCTCCCTTGGGCACCACGTCGCCGTAACCCAGTGAGGTGTAGGTTTCGGCGGAGAAATACAGCGAGACGTCGAAAGAGAAACGGCCCGCATCGCCGAGATGGCCGAGTTTTCCGAAGCGGGCCAGCAGGTAGAGCGTGGCGGCGTACAGCAGTATTTCCAGCGTGTGGGCGAGAAAGGCGACGAAGATCACGATGACCAACCGGGCCCGGGCCCGCACCGGCGCCCTGGAGAGGTGTCGGTTCATCAGGCCGAGCACCTCGTAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //